Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04] 63,439 sequences; 2,073,344,508 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq21504 120 3e-22 seq475 109 6e-19 seq188 100 3e-16 seq58060 96.9 4e-15 seq10281 93.3 5e-14 seq560 91.5 2e-13 seq220 91.5 2e-13 seq604 89.7 6e-13 seq273 89.7 6e-13 seq87 89.7 6e-13 >seq21504 Length=484 Score = 120 bits (132), Expect = 3e-22 Identities = 146/195 (75%), Gaps = 8/195 (4%) Strand=Plus/Minus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 ||||| || || ||||| || |||| ||| || | || || |||||||| |||||||| Sbjct 433 TCCTTCTGGATGTTGTAGTCGGCCAAAGTGCGACCATCCTCAAGCTGCTTGCCAGCGAAG 374 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGT 42136 ||||| ||||||||||| | ||| | || |||||||||| ||| |||| | ||| | | Sbjct 373 ATGAGACGCTGCTGGTCCGGTGGGATGCCCTCCTTGTCC-TGAATTTTGGCTTTCACGTT 315 Query 42137 CGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTT 42193 | | ||||| |||| ||||| |||| ||||| || ||||| || || ||||| Sbjct 314 ATCAATGGTGTCAGAGCTC---TCCACTTCGAGGGTGATAGTCTTGCCTGTAAGGGTCTT 258 Query 42194 TACAAAGATTTGCAT 42208 || ||||||||||| Sbjct 257 GACGAAGATTTGCAT 243 >seq475 Length=1570329 Score = 109 bits (120), Expect = 6e-19 Identities = 164/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 || || || | ||||| |||| |||| || ||| || || || ||||| |||| Sbjct 1256106 CCACCCCTCAGACGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAA 1256047 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 ||||| || | || || |||||||| || || || ||||| | ||||||||| | || Sbjct 1256046 AGAGTGCGGCCATCTTCCAGCTGCTTGCCCGCAAAGATGAGCCTCTGCTGGTCAGGGGGG 1255987 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 42161 | || |||||| ||| ||| || || | || | | |||||||| | ||||| Sbjct 1255986 ATGCCCTCCTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCCACC 1255927 Query 42162 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTCAC 42214 || | |||||||| ||||| || || ||||| || || ||||||||||| || Sbjct 1255926 TCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAAATTTGCATTTTGAC 1255874 >seq188 Length=3215107 Score = 100 bits (110), Expect = 3e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 41999 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 42058 |||| | |||| ||| ||| || || ||||| || || | ||||| || | || || Sbjct 2830953 CACCGAGTGCAGAGTGGACTCTTTCTGGATATTATAGTCTGAGAGAGTGCGGCCATCCTC 2830894 Query 42059 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCAT 42118 ||||| || || || || || || ||||||||||| | ||| | || |||||||| Sbjct 2830893 CAGCTGTTTGCCCGCAAAAATCAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTGTTTTG 2830834 Query 42119 GATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 42178 |||||| ||||| || | | ||||| | | | || || | |||||||| || Sbjct 2830833 GATTTTAGCTTTGACATTCTCAATAGTGTCATTGGGCTTGACCTCAAGTGTGATGGTCTT 2830774 Query 42179 GCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||| ||||| ||||| |||||||| ||||| Sbjct 2830773 GCCTGTTAGGGTCTTCACAAAGATCTGCAT 2830744 >seq58060 Length=210 Score = 96.9 bits (106), Expect = 4e-15 Identities = 86/108 (80%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 ||| || ||||| ||||| ||||||| ||| || |||| || |||||||| |||||||| Sbjct 159 CTCTTTCTGAATGTTGTAGTCAGCCAAAGTGCGACCGTCCTCAAGCTGCTTCCCAGCGAA 100 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTT 42124 ||||| ||||||||||| | ||| | || ||||||||| ||| || Sbjct 99 GATGAGACGCTGCTGGTCCGGTGGGATGCCTTCCTTGTCCTGGATCTT 52 >seq10281 Length=966 Score = 93.3 bits (102), Expect = 5e-14 Identities = 155/220 (70%), Gaps = 8/220 (4%) Strand=Plus/Minus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 |||||| ||||| || | || |||||| || || ||||| ||||||| |||||| | Sbjct 706 ACGCAAGACCAAGTGAAGCGTAGACTCCTTCTGGATGTTGTAGTCAGCCAAAGTCCGGCC 647 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 ||| || |||||||| || || || || | || |||||| || | ||| | || || || Sbjct 646 GTCTTCGAGCTGCTTTCCTGCAAAGATCAATCTCTGCTGATCCGGTGGGATGCCTTCTTT 587 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCGCC-ACCGTGTC---GCTCGATTCCACATCGACCG 42168 ||| |||||| ||| | ||| | | | || || |||| ||||| || | | Sbjct 586 GTCTTGGATTTTGGCTTTCA-CGTTGTCGATGGTATCAGAGCTC---TCCACCTCCAAAG 531 Query 42169 TGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || || || ||||| | || || |||||||||||||| Sbjct 530 TAATCGTCTTCCCCGTCAAGGTTTTAACAAAGATTTGCAT 491 Score = 87.8 bits (96), Expect = 2e-12 Identities = 161/232 (69%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| || | || ||| | ||||| || | || ||| || || || ||||| ||||| Sbjct 946 ACCACCACGTAGACGAAGAACCAAGTGGAGGGTCGACTCTTTCTGGATGTTGTAGTCAGC 887 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || || || | || || |||||||| |||||||| ||||| ||||||||||| | ||| Sbjct 886 CAATGTGCGACCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGTGG 827 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATT 42156 | | || ||||| |||||| |||| ||| | | | || || ||| | Sbjct 826 GATACCTTCTTTGTCTTGGATTTTAGCCTTGA-CGTTGTCGATAGTATCAGAACTC---T 771 Query 42157 CCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || || | |||||||| || ||||| || ||||| || ||||| ||||| Sbjct 770 CGACCTCCAGAGTGATGGTCTTCCCCGTAAGGGTCTTGACGAAGATCTGCAT 719 >seq560 Length=571364 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 253254 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 253195 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 253194 ATACTAACGAGGA 253182 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 271761 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 271702 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 271701 ATACTAACGAGGA 271689 >seq220 Length=1446099 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 516895 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 516836 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 516835 ATACTAACGAGGA 516823 >seq604 Length=510426 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 334088 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 334029 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 334028 TACTAACGAGGA 334017 >seq273 Length=4066651 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 896215 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 896274 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 896275 TACTAACGAGGA 896286 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 899582 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 899641 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 899642 TACTAACGAGGA 899653 >seq87 Length=6336671 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 5590684 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 5590743 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 5590744 TACTAACGAGGA 5590755 Score = 84.2 bits (92), Expect = 2e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 57005 TTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 57064 |||||| || | | ||| |||||| ||||||||||||||||||||| ||||| ||||| Sbjct 3696258 TTCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCAC 3696317 Query 57065 TATACTACCGAGGA 57078 ||||||| |||||| Sbjct 3696318 TATACTAACGAGGA 3696331 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 542782039039760