Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04]
63,439 sequences; 2,073,344,508 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq29432 102 8e-17
seq10281 96.9 3e-15
seq21504 95.1 1e-14
seq42717 84.2 2e-11
>seq29432
Length=351
Score = 102 bits (112), Expect = 8e-17
Identities = 141/195 (72%), Gaps = 2/195 (1%)
Strand=Plus/Plus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
|| || || || ||||||||||| || ||||||| ||| ||||| ||||| || |
Sbjct 145 GATTCTTTCTGGATGTTGTAGTCAGCCAAAGTACGCCCGTCTTCGAGCTGTTTTCCAGCG 204
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539
|||| | ||||| || |||||||| || ||||||||||| ||| || || | |
Sbjct 205 AAGATCAATCGCTGCTGATCCGGAGGGATTCCTTCTTTGTCTTGGATCTTGGCCTTGACA 264
Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599
||| || | |||||| | ||||| ||||||| || | || || || || || |||||
Sbjct 265 TTG-TCGATGGTGTCAGAGGACTCGACCTCGAGGGTGATGGTCTTGCCGGTTAGGGTTTT 323
Query 138600 TACAAAAATCTGCAT 138614
|| || ||||||||
Sbjct 324 CACGAAGATCTGCAT 338
>seq10281
Length=966
Score = 96.9 bits (106), Expect = 3e-15
Identities = 141/196 (72%), Gaps = 4/196 (2%)
Strand=Plus/Minus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
|||||||| || ||||||||||| | ||| || |||||||| || || |||| |
Sbjct 456 GACTCCTTCTGGATGTTGTAGTCAGCAAGAGTCCGGCCATCCTCGAGCTGCTTTCCGGCA 397
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539
|||| | | || |||||||| |||||||| || || || ||| |||| | || |
Sbjct 396 AAGATCAACCTTTGCTGGTCCGGTGGTATACCCTCCTTATC-TTGAATTTTAGCCTTGAC 338
Query 138540 -TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598
||| || |||||||||| ||| ||||||| || | ||| || || || || ||||
Sbjct 337 GTTG-TCGACGGTGTCGGAGCTCTCGACCTCGAGGGTGATCGTCTTCCCCGTTAGGGTTT 279
Query 138599 TTACAAAAATCTGCAT 138614
| || || ||||||||
Sbjct 278 TGACGAAGATCTGCAT 263
Score = 96.9 bits (106), Expect = 3e-15
Identities = 158/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446
||| || || | |||||| || || || | | |||||||| || |||||||||||
Sbjct 718 GCCACCACGGAGACGCAAGACCAAGTGAAGCGTAGACTCCTTCTGGATGTTGTAGTCAGC 659
Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506
|| ||| || ||| ||||| || || || | | |||| | | ||| || ||||| ||
Sbjct 658 CAAAGTCCGGCCGTCTTCGAGCTGCTTTCCTGCAAAGATCAATCTCTGCTGATCCGGTGG 599
Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566
|| ||||||||||| |||||| ||| | | || | ||| || | ||||||
Sbjct 598 GATGCCTTCTTTGTCTTGGATTTTGGCTTTCACGTTGTCGATGGTATCAGAGCTCTCCAC 539
Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
||| | || | ||| || || |||| ||||| ||||| || |||||
Sbjct 538 CTCCAAAGTAATCGTCTTCCCCGTCAAGGTTTTAACAAAGATTTGCAT 491
>seq21504
Length=484
Score = 95.1 bits (104), Expect = 1e-14
Identities = 161/230 (70%), Gaps = 4/230 (2%)
Strand=Plus/Minus
Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446
||| || || | |||||| || || || | ||||||| || || |||||||||||
Sbjct 242 GCCACCACGGAGACGCAAGACCAAGTGAAGTGTTGACTCTTTCTGGATGTTGTAGTCAGC 183
Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506
| ||| || || |||||||| || |||| |||||| | || |||||||| ||
Sbjct 182 AAGAGTTCGTCCATCTTCGAGTTGCTTTCCGGCGAAGATTAACCTTTGCTGGTCCGGTGG 123
Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCC 138564
|| ||||| ||||| || | || ||||| | ||| || | ||||||| ||||
Sbjct 122 GATGCCTTCCTTGTC-CTGTATCTTGGTTTTCACGTTG-TCGATAGTGTCGGAGCTCTCC 65
Query 138565 ACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
||||||| || | ||| || || || || || || || || ||||||||
Sbjct 64 ACCTCGAGGGTGATCGTCTTTCCGGTGAGTGTCTTGACGAAGATCTGCAT 15
Score = 82.4 bits (90), Expect = 8e-11
Identities = 157/229 (69%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
|| || || | ||| | || || || | | | || ||||| || |||||||||||| |
Sbjct 469 CCACCACGGAGACGAAGGACCAAGTGAAGGGTCGATTCCTTCTGGATGTTGTAGTCGGCC 410
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| ||| || ||||| || || || || | |||| |||||||| |||||||| ||
Sbjct 409 AAAGTGCGACCATCCTCAAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGTGGG 350
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566
|| || || ||||| ||| |||| | ||| | | || | |||||| | ||||||
Sbjct 349 ATGCCCTCCTTGTC-CTGAATTTTGGCTTTCACGTTATCAATGGTGTCAGAGCTCTCCAC 291
Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615
|||| || | || || || || || || || || || || ||||||
Sbjct 290 TTCGAGGGTGATAGTCTTGCCTGTAAGGGTCTTGACGAAGATTTGCATG 242
>seq42717
Length=256
Score = 84.2 bits (92), Expect = 2e-11
Identities = 112/153 (73%), Gaps = 2/153 (1%)
Strand=Plus/Minus
Query 138405 AACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTC 138464
||| | ||||| | ||||||||||||||||||||||| || ||| || || ||
Sbjct 162 AACAAGATGTAAAGTCGACTCCTTTTGAATGTTGTAGTCAGCCAAAGTCCGGCCATCTTC 103
Query 138465 GAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGT 138524
|||||||| |||| |||| || | ||| || |||||||| || ||||| |||||
Sbjct 102 AAGTTGTTTTCCGGCGAAGATAAGCCTCTGCTGATCCGGAGGGATGCCTTCCTTGTCCTG 43
Query 138525 GATTTTTTGTTTTA-ATTGTTCCACGGTGTCGG 138556
||| || ||| | |||| || | ||||||||
Sbjct 42 GATCTTGGCTTTAACATTG-TCGATGGTGTCGG 11
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 495868870120080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |