Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04] 63,439 sequences; 2,073,344,508 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq29432 102 8e-17 seq10281 96.9 3e-15 seq21504 95.1 1e-14 seq42717 84.2 2e-11 >seq29432 Length=351 Score = 102 bits (112), Expect = 8e-17 Identities = 141/195 (72%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || || || || ||||||||||| || ||||||| ||| ||||| ||||| || | Sbjct 145 GATTCTTTCTGGATGTTGTAGTCAGCCAAAGTACGCCCGTCTTCGAGCTGTTTTCCAGCG 204 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 |||| | ||||| || |||||||| || ||||||||||| ||| || || | | Sbjct 205 AAGATCAATCGCTGCTGATCCGGAGGGATTCCTTCTTTGTCTTGGATCTTGGCCTTGACA 264 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 ||| || | |||||| | ||||| ||||||| || | || || || || || ||||| Sbjct 265 TTG-TCGATGGTGTCAGAGGACTCGACCTCGAGGGTGATGGTCTTGCCGGTTAGGGTTTT 323 Query 138600 TACAAAAATCTGCAT 138614 || || |||||||| Sbjct 324 CACGAAGATCTGCAT 338 >seq10281 Length=966 Score = 96.9 bits (106), Expect = 3e-15 Identities = 141/196 (72%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || ||||||||||| | ||| || |||||||| || || |||| | Sbjct 456 GACTCCTTCTGGATGTTGTAGTCAGCAAGAGTCCGGCCATCCTCGAGCTGCTTTCCGGCA 397 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539 |||| | | || |||||||| |||||||| || || || ||| |||| | || | Sbjct 396 AAGATCAACCTTTGCTGGTCCGGTGGTATACCCTCCTTATC-TTGAATTTTAGCCTTGAC 338 Query 138540 -TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 ||| || |||||||||| ||| ||||||| || | ||| || || || || |||| Sbjct 337 GTTG-TCGACGGTGTCGGAGCTCTCGACCTCGAGGGTGATCGTCTTCCCCGTTAGGGTTT 279 Query 138599 TTACAAAAATCTGCAT 138614 | || || |||||||| Sbjct 278 TGACGAAGATCTGCAT 263 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || || | |||||| || || || | | |||||||| || ||||||||||| Sbjct 718 GCCACCACGGAGACGCAAGACCAAGTGAAGCGTAGACTCCTTCTGGATGTTGTAGTCAGC 659 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || ||| || ||| ||||| || || || | | |||| | | ||| || ||||| || Sbjct 658 CAAAGTCCGGCCGTCTTCGAGCTGCTTTCCTGCAAAGATCAATCTCTGCTGATCCGGTGG 599 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||||||||| |||||| ||| | | || | ||| || | |||||| Sbjct 598 GATGCCTTCTTTGTCTTGGATTTTGGCTTTCACGTTGTCGATGGTATCAGAGCTCTCCAC 539 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | || | ||| || || |||| ||||| ||||| || ||||| Sbjct 538 CTCCAAAGTAATCGTCTTCCCCGTCAAGGTTTTAACAAAGATTTGCAT 491 >seq21504 Length=484 Score = 95.1 bits (104), Expect = 1e-14 Identities = 161/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || || | |||||| || || || | ||||||| || || ||||||||||| Sbjct 242 GCCACCACGGAGACGCAAGACCAAGTGAAGTGTTGACTCTTTCTGGATGTTGTAGTCAGC 183 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | ||| || || |||||||| || |||| |||||| | || |||||||| || Sbjct 182 AAGAGTTCGTCCATCTTCGAGTTGCTTTCCGGCGAAGATTAACCTTTGCTGGTCCGGTGG 123 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCC 138564 || ||||| ||||| || | || ||||| | ||| || | ||||||| |||| Sbjct 122 GATGCCTTCCTTGTC-CTGTATCTTGGTTTTCACGTTG-TCGATAGTGTCGGAGCTCTCC 65 Query 138565 ACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||||| || | ||| || || || || || || || || |||||||| Sbjct 64 ACCTCGAGGGTGATCGTCTTTCCGGTGAGTGTCTTGACGAAGATCTGCAT 15 Score = 82.4 bits (90), Expect = 8e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | || || || | | | || ||||| || |||||||||||| | Sbjct 469 CCACCACGGAGACGAAGGACCAAGTGAAGGGTCGATTCCTTCTGGATGTTGTAGTCGGCC 410 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || ||||| || || || || | |||| |||||||| |||||||| || Sbjct 409 AAAGTGCGACCATCCTCAAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGTGGG 350 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || || ||||| ||| |||| | ||| | | || | |||||| | |||||| Sbjct 349 ATGCCCTCCTTGTC-CTGAATTTTGGCTTTCACGTTATCAATGGTGTCAGAGCTCTCCAC 291 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 |||| || | || || || || || || || || || || |||||| Sbjct 290 TTCGAGGGTGATAGTCTTGCCTGTAAGGGTCTTGACGAAGATTTGCATG 242 >seq42717 Length=256 Score = 84.2 bits (92), Expect = 2e-11 Identities = 112/153 (73%), Gaps = 2/153 (1%) Strand=Plus/Minus Query 138405 AACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTC 138464 ||| | ||||| | ||||||||||||||||||||||| || ||| || || || Sbjct 162 AACAAGATGTAAAGTCGACTCCTTTTGAATGTTGTAGTCAGCCAAAGTCCGGCCATCTTC 103 Query 138465 GAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGT 138524 |||||||| |||| |||| || | ||| || |||||||| || ||||| ||||| Sbjct 102 AAGTTGTTTTCCGGCGAAGATAAGCCTCTGCTGATCCGGAGGGATGCCTTCCTTGTCCTG 43 Query 138525 GATTTTTTGTTTTA-ATTGTTCCACGGTGTCGG 138556 ||| || ||| | |||| || | |||||||| Sbjct 42 GATCTTGGCTTTAACATTG-TCGATGGTGTCGG 11 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495868870120080