Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04] 63,439 sequences; 2,073,344,508 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq19201 91.5 1e-13 seq21504 82.4 5e-11 >seq19201 Length=536 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||| || ||||| || || || || || ||||||||||| ||| | || ||||||| Sbjct 296 AACCAAGTGAAGCGTCGACTCCTTCTGGATGTTGTAATCCGCGAGTGTCCTTCCGTCTTC 355 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 | || || || ||| |||||| ||||| || || ||| |||||||||||||| Sbjct 356 CAGCTGCTTCCCCGCGAATATCAGCCGCTGCTGATCCGGTGGGATTCCTTCCTTGTCCTG 415 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 || || || ||| | || || || ||| ||| || |||| ||| || || || Sbjct 416 GATCTTCGCCTTCACATTGTCGATCGTGTCGGACGATTCAACCTCTAGGGTTATCGTCTT 475 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 || || || ||||| ||||| || ||||| || Sbjct 476 CCCCGTTAGGGTTTTCACAAAGATCTGCATTTT 508 >seq21504 Length=484 Score = 82.4 bits (90), Expect = 5e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 ||||||| || | | || || || ||||| || || ||||| || |||||||| || Sbjct 243 TGCCACCACGGAGACGCAAGACCAAGTGAAGTGTTGACTCTTTCTGGATGTTGTAGTCAG 184 Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 ||| ||| | ||||| | ||| || || ||| | || || | || ||||| || Sbjct 183 CAAGAGTTCGTCCATCTTCGAGTTGCTTTCCGGCGAAGATTAACCTTTGCTGGTCCGGTG 124 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 | || ||||||||||| || ||| |||| || | || ||||| ||| | || | Sbjct 123 GGATGCCTTCCTTGTCCTGTATCTTGGTTTTCACGTTGTCGATAGTGTCGGAGCTCTCCA 64 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 | || | ||| || || || || || || || || || || || |||||| Sbjct 63 CCTCGAGGGTGATCGTCTTTCCGGTGAGTGTCTTGACGAAGATCTGCATA 14 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357115677796115