Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04]
63,439 sequences; 2,073,344,508 total letters
Query= NC_011423.1
Length=111724
Score E
Sequences producing significant alignments: (Bits) Value
seq19201 91.5 1e-13
seq21504 82.4 5e-11
>seq19201
Length=536
Score = 91.5 bits (100), Expect = 1e-13
Identities = 148/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026
||| || ||||| || || || || || ||||||||||| ||| | || |||||||
Sbjct 296 AACCAAGTGAAGCGTCGACTCCTTCTGGATGTTGTAATCCGCGAGTGTCCTTCCGTCTTC 355
Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086
| || || || ||| |||||| ||||| || || ||| ||||||||||||||
Sbjct 356 CAGCTGCTTCCCCGCGAATATCAGCCGCTGCTGATCCGGTGGGATTCCTTCCTTGTCCTG 415
Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146
|| || || ||| | || || || ||| ||| || |||| ||| || || ||
Sbjct 416 GATCTTCGCCTTCACATTGTCGATCGTGTCGGACGATTCAACCTCTAGGGTTATCGTCTT 475
Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179
|| || || ||||| ||||| || ||||| ||
Sbjct 476 CCCCGTTAGGGTTTTCACAAAGATCTGCATTTT 508
>seq21504
Length=484
Score = 82.4 bits (90), Expect = 5e-11
Identities = 156/230 (68%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007
||||||| || | | || || || ||||| || || ||||| || |||||||| ||
Sbjct 243 TGCCACCACGGAGACGCAAGACCAAGTGAAGTGTTGACTCTTTCTGGATGTTGTAGTCAG 184
Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067
||| ||| | ||||| | ||| || || ||| | || || | || ||||| ||
Sbjct 183 CAAGAGTTCGTCCATCTTCGAGTTGCTTTCCGGCGAAGATTAACCTTTGCTGGTCCGGTG 124
Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127
| || ||||||||||| || ||| |||| || | || ||||| ||| | || |
Sbjct 123 GGATGCCTTCCTTGTCCTGTATCTTGGTTTTCACGTTGTCGATAGTGTCGGAGCTCTCCA 64
Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177
| || | ||| || || || || || || || || || || || ||||||
Sbjct 63 CCTCGAGGGTGATCGTCTTTCCGGTGAGTGTCTTGACGAAGATCTGCATA 14
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 357115677796115
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |