Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04] 63,439 sequences; 2,073,344,508 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq19370 140 3e-28 seq29432 136 4e-27 seq21504 118 1e-21 seq25626 116 4e-21 seq10281 113 4e-20 seq61295 95.1 1e-14 seq683 95.1 1e-14 seq19201 89.7 5e-13 >seq19370 Length=533 Score = 140 bits (154), Expect = 3e-28 Identities = 140/182 (77%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 ||||| ||||||||||||||||| ||| ||| || || ||| || ||||||||||| Sbjct 182 GTAGATTCTTTTTGAATATTGTAGTCGGCCAAGGTACGGCCATCCTCGAGCTGTTTTCCG 123 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| ||||||| | ||||||||| ||||| ||||| |||||||| ||||| |||| Sbjct 122 GCGAAGATCAACCTCTGCTGATCCGGAGGGATGCCTTCCTTGTCTTGAATTTTGGCCTTG 63 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| |||||| | |||||||| |||| || | || |||||||| || ||| Sbjct 62 ACATTGTCGATGGTGTCGCTGCTCTCGACCTCGAGAGTGATGGTCTTGCCGGTTAGGGTT 3 Query 127097 TT 127098 || Sbjct 2 TT 1 >seq29432 Length=351 Score = 136 bits (150), Expect = 4e-27 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 126901 CAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATC 126960 |||||| | ||| | ||| || ||||| || || ||||| || ||| || || || Sbjct 126 CAACACAAGATGAAGCGTGGATTCTTTCTGGATGTTGTAGTCAGCCAAAGTACGCCCGTC 185 Query 126961 GTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 127020 || ||||||||||||||| ||||||||||||||||||| ||||| || || || ||||| Sbjct 186 TTCGAGCTGTTTTCCAGCGAAGATCAATCGCTGCTGATCCGGAGGGATTCCTTCTTTGTC 245 Query 127021 CGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGT 127080 ||| || ||||| | |||| |||||| | |||||| |||| ||| | || Sbjct 246 TTGGATCTTGGCCTTGACATTGTCGATGGTGTCAGAGGACTCGACCTCGAGGGTGATGGT 305 Query 127081 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||||||| || ||||| || || |||||||| Sbjct 306 CTTGCCGGTTAGGGTTTTCACGAAGATCTGCAT 338 >seq21504 Length=484 Score = 118 bits (130), Expect = 1e-21 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | ||||| || | || || || || || || ||||| ||| || Sbjct 469 CCACCACGGAGACGAAGGACCAAGTGAAGGGTCGATTCCTTCTGGATGTTGTAGTCGGCC 410 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| ||| || ||||| || |||||| |||| | |||||||| || || || Sbjct 409 AAAGTGCGACCATCCTCAAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGTGGG 350 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||||||||||||| ||| ||| || || | | || | |||||| | ||||| || Sbjct 349 ATGCCCTCCTTGTCC-TGAATTTTGGCTTTCACGTTATCAATGGTGTCAGAGCTCTCCAC 291 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 ||||| ||| | || ||||| || || || || || || || |||||| Sbjct 290 TTCGAGGGTGATAGTCTTGCCTGTAAGGGTCTTGACGAAGATTTGCATG 242 >seq25626 Length=405 Score = 116 bits (128), Expect = 4e-21 Identities = 148/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 126910 ATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTG 126969 ||||| || ||||| || ||||| ||||| ||| | | ||||| || || ||||| Sbjct 333 ATGTAAAGTCGACTCCTTCTGAATGTTGTAGTCGGCTAAGGTGCGGCCGTCTTCAAGCTG 274 Query 126970 TTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTT 127029 || || ||| ||||||||| |||||| || ||||| || |||||||||||| || || Sbjct 273 CTTCCCGGCGAAGATCAATCTCTGCTGGTCCGGAGGAATACCCTCCTTGTCCTGAATCTT 214 Query 127030 CTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGT 127089 ||||| | || | |||||| | ||||| || || | || | || || ||||| Sbjct 213 AGCCTTGACGTTATCAATGGTGTCTGAGCTCTCAACCTCCAAAGTAATAGTCTTTCCGGT 154 Query 127090 CAGAGTTTTTACAAAAATCTGCAT 127113 ||||| || ||||| |||||||| Sbjct 153 GAGAGTCTTCACAAAGATCTGCAT 130 >seq10281 Length=966 Score = 113 bits (124), Expect = 4e-20 Identities = 153/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 126904 CACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTC 126963 ||| | ||| | || ||||| || || || ||||| || | | || || ||| || Sbjct 472 CACGAGATGAAGTGTCGACTCCTTCTGGATGTTGTAGTCAGCAAGAGTCCGGCCATCCTC 413 Query 126964 TAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGT 127023 ||||| ||||| || ||||||| | ||||| || || ||||| |||||||| || Sbjct 412 GAGCTGCTTTCCGGCAAAGATCAACCTTTGCTGGTCCGGTGGTATACCCTCCTTATCTTG 353 Query 127024 GATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTT 127082 ||||| ||||| ||||| |||||||||| | |||||||| |||| ||| | ||| | Sbjct 352 AATTTTAGCCTTGACGTTGT-CGACGGTGTCGGAGCTCTCGACCTCGAGGGTGATCGTCT 294 Query 127083 TGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 | || || || ||||| || || |||||||| Sbjct 293 TCCCCGTTAGGGTTTTGACGAAGATCTGCAT 263 >seq61295 Length=203 Score = 95.1 bits (104), Expect = 1e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || || ||| ||||||| | |||||| || ||||| || ||||||||| Sbjct 191 TCTTCAAGCTGCTTCCCGGCGAAGATCAACCTCTGCTGGTCCGGAGGAATACCCTCCTTG 132 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| ||| || ||||| | || | |||||| | ||||| || || | || | Sbjct 131 TCCTGGATCTTGGCCTTGACGTTATCAATGGTGTCGGAGCTCTCCACCTCCAAAGTAATG 72 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || || ||||| ||||| || ||||| |||||||| Sbjct 71 GTCTTTCCGGTGAGAGTCTTCACAAAGATCTGCAT 37 >seq683 Length=758919 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 126904 CACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTC 126963 |||||| || | || |||||||| || || || || || | ||||| ||| || Sbjct 117142 CACCAAGTGCAGAGTGGACTCTTTCTGGATGTTATAGTCTGAGAGAGTGCGGCCATCCTC 117201 Query 126964 TAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGT 127023 |||||||| || || | |||| ||||||| || || || |||||||||||||| Sbjct 117202 CAGCTGTTTGCCCGCAAAAATCAGATGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCTTG 117261 Query 127024 GATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTT 127083 |||||| |||| | ||| | ||||| | || ||| |||| || | || || Sbjct 117262 GATTTTGGCTTTGACATTTTCAATAGTGTCACTGGGCTTGACCTCGAGTGTGATGGTCTT 117321 Query 127084 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| ||||| ||||| ||||| |||||||| Sbjct 117322 GCCCGTCAGGGTTTTCACAAAGATCTGCAT 117351 >seq19201 Length=536 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964 ||||| || | ||| ||||| || || || |||||||| | | || | || || Sbjct 297 ACCAAGTGAAGCGTCGACTCCTTCTGGATGTTGTAATCCGCGAGTGTCCTTCCGTCTTCC 356 Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024 ||||| || || ||| | |||| ||||||||||| || || || || ||||||||| | Sbjct 357 AGCTGCTTCCCCGCGAATATCAGCCGCTGCTGATCCGGTGGGATTCCTTCCTTGTCCTGG 416 Query 127025 ATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTG 127084 || ||| ||| | | |||| ||||| | || || || | ||| | ||| || Sbjct 417 ATCTTCGCCTTCACATTGTCGATCGTGTCGGACGATTCAACCTCTAGGGTTATCGTCTTC 476 Query 127085 CCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || || || ||||| ||||| |||||||| Sbjct 477 CCCGTTAGGGTTTTCACAAAGATCTGCAT 505 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475123733809360