Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04]
63,439 sequences; 2,073,344,508 total letters
Query= NC_011616.1
Length=148634
Score E
Sequences producing significant alignments: (Bits) Value
seq19370 140 3e-28
seq29432 136 4e-27
seq21504 118 1e-21
seq25626 116 4e-21
seq10281 113 4e-20
seq61295 95.1 1e-14
seq683 95.1 1e-14
seq19201 89.7 5e-13
>seq19370
Length=533
Score = 140 bits (154), Expect = 3e-28
Identities = 140/182 (77%), Gaps = 0/182 (0%)
Strand=Plus/Minus
Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976
||||| ||||||||||||||||| ||| ||| || || ||| || |||||||||||
Sbjct 182 GTAGATTCTTTTTGAATATTGTAGTCGGCCAAGGTACGGCCATCCTCGAGCTGTTTTCCG 123
Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036
||| ||||||| | ||||||||| ||||| ||||| |||||||| ||||| ||||
Sbjct 122 GCGAAGATCAACCTCTGCTGATCCGGAGGGATGCCTTCCTTGTCTTGAATTTTGGCCTTG 63
Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096
| | |||| |||||| | |||||||| |||| || | || |||||||| || |||
Sbjct 62 ACATTGTCGATGGTGTCGCTGCTCTCGACCTCGAGAGTGATGGTCTTGCCGGTTAGGGTT 3
Query 127097 TT 127098
||
Sbjct 2 TT 1
>seq29432
Length=351
Score = 136 bits (150), Expect = 4e-27
Identities = 158/213 (74%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 126901 CAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATC 126960
|||||| | ||| | ||| || ||||| || || ||||| || ||| || || ||
Sbjct 126 CAACACAAGATGAAGCGTGGATTCTTTCTGGATGTTGTAGTCAGCCAAAGTACGCCCGTC 185
Query 126961 GTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 127020
|| ||||||||||||||| ||||||||||||||||||| ||||| || || || |||||
Sbjct 186 TTCGAGCTGTTTTCCAGCGAAGATCAATCGCTGCTGATCCGGAGGGATTCCTTCTTTGTC 245
Query 127021 CGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGT 127080
||| || ||||| | |||| |||||| | |||||| |||| ||| | ||
Sbjct 246 TTGGATCTTGGCCTTGACATTGTCGATGGTGTCAGAGGACTCGACCTCGAGGGTGATGGT 305
Query 127081 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|||||||| || ||||| || || ||||||||
Sbjct 306 CTTGCCGGTTAGGGTTTTCACGAAGATCTGCAT 338
>seq21504
Length=484
Score = 118 bits (130), Expect = 1e-21
Identities = 165/229 (72%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| || | || | ||||| || | || || || || || || ||||| ||| ||
Sbjct 469 CCACCACGGAGACGAAGGACCAAGTGAAGGGTCGATTCCTTCTGGATGTTGTAGTCGGCC 410
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| |||||| ||| || ||||| || |||||| |||| | |||||||| || || ||
Sbjct 409 AAAGTGCGACCATCCTCAAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGTGGG 350
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065
||||||||||||||| ||| ||| || || | | || | |||||| | ||||| ||
Sbjct 349 ATGCCCTCCTTGTCC-TGAATTTTGGCTTTCACGTTATCAATGGTGTCAGAGCTCTCCAC 291
Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114
||||| ||| | || ||||| || || || || || || || ||||||
Sbjct 290 TTCGAGGGTGATAGTCTTGCCTGTAAGGGTCTTGACGAAGATTTGCATG 242
>seq25626
Length=405
Score = 116 bits (128), Expect = 4e-21
Identities = 148/204 (73%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 126910 ATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTG 126969
||||| || ||||| || ||||| ||||| ||| | | ||||| || || |||||
Sbjct 333 ATGTAAAGTCGACTCCTTCTGAATGTTGTAGTCGGCTAAGGTGCGGCCGTCTTCAAGCTG 274
Query 126970 TTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTT 127029
|| || ||| ||||||||| |||||| || ||||| || |||||||||||| || ||
Sbjct 273 CTTCCCGGCGAAGATCAATCTCTGCTGGTCCGGAGGAATACCCTCCTTGTCCTGAATCTT 214
Query 127030 CTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGT 127089
||||| | || | |||||| | ||||| || || | || | || || |||||
Sbjct 213 AGCCTTGACGTTATCAATGGTGTCTGAGCTCTCAACCTCCAAAGTAATAGTCTTTCCGGT 154
Query 127090 CAGAGTTTTTACAAAAATCTGCAT 127113
||||| || ||||| ||||||||
Sbjct 153 GAGAGTCTTCACAAAGATCTGCAT 130
>seq10281
Length=966
Score = 113 bits (124), Expect = 4e-20
Identities = 153/211 (73%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 126904 CACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTC 126963
||| | ||| | || ||||| || || || ||||| || | | || || ||| ||
Sbjct 472 CACGAGATGAAGTGTCGACTCCTTCTGGATGTTGTAGTCAGCAAGAGTCCGGCCATCCTC 413
Query 126964 TAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGT 127023
||||| ||||| || ||||||| | ||||| || || ||||| |||||||| ||
Sbjct 412 GAGCTGCTTTCCGGCAAAGATCAACCTTTGCTGGTCCGGTGGTATACCCTCCTTATCTTG 353
Query 127024 GATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTT 127082
||||| ||||| ||||| |||||||||| | |||||||| |||| ||| | ||| |
Sbjct 352 AATTTTAGCCTTGACGTTGT-CGACGGTGTCGGAGCTCTCGACCTCGAGGGTGATCGTCT 294
Query 127083 TGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
| || || || ||||| || || ||||||||
Sbjct 293 TCCCCGTTAGGGTTTTGACGAAGATCTGCAT 263
>seq61295
Length=203
Score = 95.1 bits (104), Expect = 1e-14
Identities = 114/155 (74%), Gaps = 0/155 (0%)
Strand=Plus/Minus
Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018
|| || ||||| || || ||| ||||||| | |||||| || ||||| || |||||||||
Sbjct 191 TCTTCAAGCTGCTTCCCGGCGAAGATCAACCTCTGCTGGTCCGGAGGAATACCCTCCTTG 132
Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078
||| ||| || ||||| | || | |||||| | ||||| || || | || |
Sbjct 131 TCCTGGATCTTGGCCTTGACGTTATCAATGGTGTCGGAGCTCTCCACCTCCAAAGTAATG 72
Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|| || ||||| ||||| || ||||| ||||||||
Sbjct 71 GTCTTTCCGGTGAGAGTCTTCACAAAGATCTGCAT 37
>seq683
Length=758919
Score = 95.1 bits (104), Expect = 1e-14
Identities = 147/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 126904 CACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTC 126963
|||||| || | || |||||||| || || || || || | ||||| ||| ||
Sbjct 117142 CACCAAGTGCAGAGTGGACTCTTTCTGGATGTTATAGTCTGAGAGAGTGCGGCCATCCTC 117201
Query 126964 TAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGT 127023
|||||||| || || | |||| ||||||| || || || ||||||||||||||
Sbjct 117202 CAGCTGTTTGCCCGCAAAAATCAGATGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCTTG 117261
Query 127024 GATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTT 127083
|||||| |||| | ||| | ||||| | || ||| |||| || | || ||
Sbjct 117262 GATTTTGGCTTTGACATTTTCAATAGTGTCACTGGGCTTGACCTCGAGTGTGATGGTCTT 117321
Query 127084 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
||| ||||| ||||| ||||| ||||||||
Sbjct 117322 GCCCGTCAGGGTTTTCACAAAGATCTGCAT 117351
>seq19201
Length=536
Score = 89.7 bits (98), Expect = 5e-13
Identities = 145/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964
||||| || | ||| ||||| || || || |||||||| | | || | || ||
Sbjct 297 ACCAAGTGAAGCGTCGACTCCTTCTGGATGTTGTAATCCGCGAGTGTCCTTCCGTCTTCC 356
Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024
||||| || || ||| | |||| ||||||||||| || || || || ||||||||| |
Sbjct 357 AGCTGCTTCCCCGCGAATATCAGCCGCTGCTGATCCGGTGGGATTCCTTCCTTGTCCTGG 416
Query 127025 ATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTG 127084
|| ||| ||| | | |||| ||||| | || || || | ||| | ||| ||
Sbjct 417 ATCTTCGCCTTCACATTGTCGATCGTGTCGGACGATTCAACCTCTAGGGTTATCGTCTTC 476
Query 127085 CCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|| || || ||||| ||||| ||||||||
Sbjct 477 CCCGTTAGGGTTTTCACAAAGATCTGCAT 505
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 475123733809360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |