Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04] 63,439 sequences; 2,073,344,508 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq29432 132 4e-26 seq19370 118 1e-21 seq10281 113 4e-20 seq40511 86.0 6e-12 seq21504 86.0 6e-12 seq93 84.2 2e-11 >seq29432 Length=351 Score = 132 bits (146), Expect = 4e-26 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| | |||||||||||| ||||| ||||| ||||| || ||||| || || || Sbjct 109 ATACCTCCTCTGAGCCTCAACACAAGATGAAGCGTGGATTCTTTCTGGATGTTGTAGTCA 168 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || || || | |||||||| ||| | |||||||| ||||| ||||| Sbjct 169 GCCAAAGTACGCCCGTCTTCGAGCTGTTTTCCAGCGAAGATCAATCGCTGCTGATCCGGA 228 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || |||||||| ||||| || || |||| || | |||||| || |||||| Sbjct 229 GGGATTCCTTCTTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTGTCAGAGGACTCG 288 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || ||||| || | || ||||||||||| ||||| || || || |||||| Sbjct 289 ACCTCGAGGGTGATGGTCTTGCCGGTTAGGGTTTTCACGAAGATCTGCATC 339 >seq19370 Length=533 Score = 118 bits (130), Expect = 1e-21 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| | ||||||| ||| || ||||| || ||||| ||||| ||||| || ||| Sbjct 215 ATACCTCCCCTAAGCCTCAGCACAAGGTGCAGTGTAGATTCTTTTTGAATATTGTAGTCG 156 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| ||| || | |||||||| ||| | ||||| | ||||| ||||| Sbjct 155 GCCAAGGTACGGCCATCCTCGAGCTGTTTTCCGGCGAAGATCAACCTCTGCTGATCCGGA 96 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || |||||||| || ||||||||||| |||| || | ||||||| |||| Sbjct 95 GGGATGCCTTCCTTGTCTTGAATTTTGGCCTTGACATTGTCGATGGTGTCGCTGCTCTCG 36 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTT 45325 || |||||||| | || ||||||||||| ||||| Sbjct 35 ACCTCGAGAGTGATGGTCTTGCCGGTTAGGGTTTT 1 >seq10281 Length=966 Score = 113 bits (124), Expect = 4e-20 Identities = 165/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || || ||||| | ||| ||||| || || || ||||| ||||| || || || Sbjct 492 ATACCCCCACGAAGCCTGAGCACGAGATGAAGTGTCGACTCCTTCTGGATGTTGTAGTCA 433 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || ||| || | || ||||| || | ||||| | |||||||||||| Sbjct 432 GCAAGAGTCCGGCCATCCTCGAGCTGCTTTCCGGCAAAGATCAACCTTTGCTGGTCCGGT 373 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || || || || |||||||||||||| |||| || | || ||||||||||| ||| Sbjct 372 GGTATACCCTCCTTATCTTGAATTTTAGCCTTGA-CGTTGTCGACGGTGTCGGAGCTCTC 314 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||| ||||| || | ||| || || ||||| ||||| || || || ||||| Sbjct 313 GACCTCGAGGGTGATCGTCTTCCCCGTTAGGGTTTTGACGAAGATCTGCAT 263 Score = 89.7 bits (98), Expect = 5e-13 Identities = 160/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||| | ||| || | || ||||| || ||||| ||||| || || || Sbjct 720 ATGCCACCACGGAGACGCAAGACCAAGTGAAGCGTAGACTCCTTCTGGATGTTGTAGTCA 661 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || || || | || |||||||| | ||||||| ||||| ||||| Sbjct 660 GCCAAAGTCCGGCCGTCTTCGAGCTGCTTTCCTGCAAAGATCAATCTCTGCTGATCCGGT 601 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || ||||||||||| ||||| ||||| ||| | || | || | ||| || || ||| Sbjct 600 GGGATGCCTTCTTTGTCTTGGATTTTGGCTTTCA-CGTTGTCGATGGTATCAGAGCTCTC 542 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || | ||||| ||| || || || | ||||| ||||| |||||||| Sbjct 541 CACCTCCAAAGTAATCGTCTTCCCCGTCAAGGTTTTAACAAAGATTTGCAT 491 >seq40511 Length=266 Score = 86.0 bits (94), Expect = 6e-12 Identities = 150/216 (69%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| |||||||| | || ||||| || || || ||||| ||||| || || || Sbjct 215 ATACCTCCACGGAGCCTGAGAACGAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCA 156 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || ||| || || | ||| ||||| ||| | |||| | ||||||||||| Sbjct 155 GCGAGAGTTCGGCCGTCCTCGAGTTGCTTTCCGGCGAAAATCAGCCTCTGCTGGTCCGGT 96 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || || || || || ||||| ||||| |||| || | |||| ||||| || || Sbjct 95 GGGATTCCCTCCTTGTCTTGGATTTTGGCCTTGA-CGTTGTCTATCGTGTCAGAGCTTTC 37 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTT 45325 || ||||| || | ||| || ||||| ||||| || Sbjct 36 CACCTCGAGTGTGATCGTCTTTCCGGTGAGAGTCTT 1 >seq21504 Length=484 Score = 86.0 bits (94), Expect = 6e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||| | ||| || | || || ||||| || || ||||| || || || Sbjct 244 ATGCCACCACGGAGACGCAAGACCAAGTGAAGTGTTGACTCTTTCTGGATGTTGTAGTCA 185 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| ||| || | ||| ||||| ||| | || || | |||||||||||| Sbjct 184 GCAAGAGTTCGTCCATCTTCGAGTTGCTTTCCGGCGAAGATTAACCTTTGCTGGTCCGGT 125 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || |||||||| || || || | | || |||| || | || | |||||||| ||| Sbjct 124 GGGATGCCTTCCTTGTCCTGTA-TCTTGGTTTTCACGTTGTCGATAGTGTCGGAGCTCTC 66 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || ||||| || | ||| || ||||| || || || || || || ||||| Sbjct 65 CACCTCGAGGGTGATCGTCTTTCCGGTGAGTGTCTTGACGAAGATCTGCAT 15 Score = 82.4 bits (90), Expect = 7e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || || |||||||| ||||| || || ||| | || | ||| || | || Sbjct 445 TGAAGGGTCGATTCCTTCTGGATGTTGTAGTCGGCCAAAGTGCGACCATCCTCAAGCTGC 386 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || ||| | || | || ||||||||||| || ||||| || || || |||||||| Sbjct 385 TTGCCAGCGAAGATGAGACGCTGCTGGTCCGGTGGGATGCCCTCCTTGTCCTGAATTTTG 326 Query 45258 TGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316 ||| | || | || | |||||| || ||| |||||||| || | || ||||| || Sbjct 325 GCTTTCA-CGTTATCAATGGTGTCAGAGCTCTCCACTTCGAGGGTGATAGTCTTGCCTGT 267 Query 45317 TAGAGTTTTTACAAAAATTTGCAT 45340 || || || || || |||||||| Sbjct 266 AAGGGTCTTGACGAAGATTTGCAT 243 >seq93 Length=2374459 Score = 84.2 bits (92), Expect = 2e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 123606 GAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAATCAGAGC 123665 || || || || || ||||||||||||||||| |||| ||| |||||| ||| ||| Sbjct 51296 GAGACAGGTACCCCATACATGCTCTACAAAGATTCCTGTAACCGGAAAAGCAACCAGCAG 51237 Query 123666 AACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAAT 123706 ||| ||||||| || ||||| || ||||| ||| | ||||| Sbjct 51236 AACCTGGGAACGATCAAATGCAGCAATCTGTGCACAGAAAT 51196 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451644767112440