Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04]
63,439 sequences; 2,073,344,508 total letters
Query= NC_012663.1
Length=60074
Score E
Sequences producing significant alignments: (Bits) Value
seq7636 93.3 2e-14
seq6051 86.0 2e-12
>seq7636
Length=1249
Score = 93.3 bits (102), Expect = 2e-14
Identities = 174/250 (70%), Gaps = 8/250 (3%)
Strand=Plus/Plus
Query 18287 AGATATGTTTGTAGCAGGAGTTGGAACTGGTGGCACTATTACTGGAGCAGGTCATTCACT 18346
|||||| || || || || |||||||||||||| || ||| ||||||||| | | ||
Sbjct 663 AGATATATTGGTTGCTGGTGTTGGAACTGGTGGAACGGTTAGTGGAGCAGGGAAGTTCCT 722
Query 18347 CAA--AGAAGAATTTCCTAG-CATTAAAATTGTTGGAGTTGAATCAGCAGAATCACCAGT 18403
||| ||| |||| || |||||| || || |||||| | | ||| || ||
Sbjct 723 CAAGGAGATGAAT---AAAGACATTAAGGTTTGTGTGGTTGAACCTGTGGAAAGTCCGGT 779
Query 18404 ACTTAGTGGAGGAGAACCTGGACCACATAAGATTCAAGGTATTTCAGCAGGTTTTATTCC 18463
||| |||||||||||||| || |||||| ||| || || ||| | ||| | || ||
Sbjct 780 ACTCAGTGGAGGAGAACCAGGTCCACATTTGATCCAGGGAATTGGTTCGGGTATCATCCC 839
Query 18464 -ACAAATTCTTGATATGGATATCATTGATGAAATCAAACAAGTATCGAGTGAACAAGCTC 18522
|| |||| | ||| | || |||||||||||| ||||| |||| ||||
Sbjct 840 AACGAATT-TGGATTTAAGCATTGTTGATGAAATCATTCAAGTGAAAGGTGAGGAAGCCA 898
Query 18523 TTGATACAGC 18532
|||| |||||
Sbjct 899 TTGAAACAGC 908
>seq6051
Length=1520
Score = 86.0 bits (94), Expect = 2e-12
Identities = 168/246 (68%), Gaps = 2/246 (1%)
Strand=Plus/Minus
Query 18288 GATATGTTTGTAGCAGGAGTTGGAACTGGTGGCACTATTACTGGAGCAGGTC-ATTCACT 18346
||||| || || || ||| ||||||||||||| || || ||||| | |||| ||||| |
Sbjct 696 GATATATTGGTTGCGGGAATTGGAACTGGTGGAACCATAACTGGTGTTGGTCGATTCATT 637
Query 18347 CAAAGAAGAATTTCCTAGCATTAAAATTGTTGGAGTTGAATCAGCAGAATCACCAGTACT 18406
|| ||||| | | | | || || |||| ||||| | | ||| | ||||
Sbjct 636 AAAGAAAGAAAACCTGAAC-TGAAGGTTATTGGTGTTGAGCCCACGGAAAGTGCCATACT 578
Query 18407 TAGTGGAGGAGAACCTGGACCACATAAGATTCAAGGTATTTCAGCAGGTTTTATTCCACA 18466
||||||| |||| ||||| || ||||||||||| ||| ||| |||||| |||| |
Sbjct 577 CTCTGGAGGAAAACCAGGACCTCACAAGATTCAAGGAATTGGAGCTGGTTTTGTTCCTAA 518
Query 18467 AATTCTTGATATGGATATCATTGATGAAATCAAACAAGTATCGAGTGAACAAGCTCTTGA 18526
| | | ||| || ||| | |||||| || | | || ||||| |||| ||||
Sbjct 517 GAATTTGGATCAGGCTATTGTAGATGAATACATAGCGATTTCCAGTGAGGAAGCCATTGA 458
Query 18527 TACAGC 18532
|| ||
Sbjct 457 AACCGC 452
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 191970472295448
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |