Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04] 63,439 sequences; 2,073,344,508 total letters Query= NC_012663.1 Length=60074 Score E Sequences producing significant alignments: (Bits) Value seq7636 93.3 2e-14 seq6051 86.0 2e-12 >seq7636 Length=1249 Score = 93.3 bits (102), Expect = 2e-14 Identities = 174/250 (70%), Gaps = 8/250 (3%) Strand=Plus/Plus Query 18287 AGATATGTTTGTAGCAGGAGTTGGAACTGGTGGCACTATTACTGGAGCAGGTCATTCACT 18346 |||||| || || || || |||||||||||||| || ||| ||||||||| | | || Sbjct 663 AGATATATTGGTTGCTGGTGTTGGAACTGGTGGAACGGTTAGTGGAGCAGGGAAGTTCCT 722 Query 18347 CAA--AGAAGAATTTCCTAG-CATTAAAATTGTTGGAGTTGAATCAGCAGAATCACCAGT 18403 ||| ||| |||| || |||||| || || |||||| | | ||| || || Sbjct 723 CAAGGAGATGAAT---AAAGACATTAAGGTTTGTGTGGTTGAACCTGTGGAAAGTCCGGT 779 Query 18404 ACTTAGTGGAGGAGAACCTGGACCACATAAGATTCAAGGTATTTCAGCAGGTTTTATTCC 18463 ||| |||||||||||||| || |||||| ||| || || ||| | ||| | || || Sbjct 780 ACTCAGTGGAGGAGAACCAGGTCCACATTTGATCCAGGGAATTGGTTCGGGTATCATCCC 839 Query 18464 -ACAAATTCTTGATATGGATATCATTGATGAAATCAAACAAGTATCGAGTGAACAAGCTC 18522 || |||| | ||| | || |||||||||||| ||||| |||| |||| Sbjct 840 AACGAATT-TGGATTTAAGCATTGTTGATGAAATCATTCAAGTGAAAGGTGAGGAAGCCA 898 Query 18523 TTGATACAGC 18532 |||| ||||| Sbjct 899 TTGAAACAGC 908 >seq6051 Length=1520 Score = 86.0 bits (94), Expect = 2e-12 Identities = 168/246 (68%), Gaps = 2/246 (1%) Strand=Plus/Minus Query 18288 GATATGTTTGTAGCAGGAGTTGGAACTGGTGGCACTATTACTGGAGCAGGTC-ATTCACT 18346 ||||| || || || ||| ||||||||||||| || || ||||| | |||| ||||| | Sbjct 696 GATATATTGGTTGCGGGAATTGGAACTGGTGGAACCATAACTGGTGTTGGTCGATTCATT 637 Query 18347 CAAAGAAGAATTTCCTAGCATTAAAATTGTTGGAGTTGAATCAGCAGAATCACCAGTACT 18406 || ||||| | | | | || || |||| ||||| | | ||| | |||| Sbjct 636 AAAGAAAGAAAACCTGAAC-TGAAGGTTATTGGTGTTGAGCCCACGGAAAGTGCCATACT 578 Query 18407 TAGTGGAGGAGAACCTGGACCACATAAGATTCAAGGTATTTCAGCAGGTTTTATTCCACA 18466 ||||||| |||| ||||| || ||||||||||| ||| ||| |||||| |||| | Sbjct 577 CTCTGGAGGAAAACCAGGACCTCACAAGATTCAAGGAATTGGAGCTGGTTTTGTTCCTAA 518 Query 18467 AATTCTTGATATGGATATCATTGATGAAATCAAACAAGTATCGAGTGAACAAGCTCTTGA 18526 | | | ||| || ||| | |||||| || | | || ||||| |||| |||| Sbjct 517 GAATTTGGATCAGGCTATTGTAGATGAATACATAGCGATTTCCAGTGAGGAAGCCATTGA 458 Query 18527 TACAGC 18532 || || Sbjct 457 AACCGC 452 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 191970472295448