Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04]
63,439 sequences; 2,073,344,508 total letters
Query= NC_012783.2
Length=226205
Score E
Sequences producing significant alignments: (Bits) Value
seq135 149 9e-31
>seq135
Length=5734681
Score = 149 bits (164), Expect = 9e-31
Identities = 202/282 (72%), Gaps = 0/282 (0%)
Strand=Plus/Plus
Query 8894 GGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGGTTTTCACGATGTCT 8953
||||| || | ||| || || ||||| ||||| || | || || || | ||| |
Sbjct 1833716 GGACAGCCTTGCACGTTATTGCAGATGAGAGACTGGATTGAGGCAGTGTTGATGATTTTA 1833775
Query 8954 AAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACGTTC 9013
|||||||| || || || || ||||| ||||||||||| || || || || ||
Sbjct 1833776 AAACCTACTTCTCCACCAAAAGTGCTCGGTTTCCAGTAGTTAGGAGAACATATAGGATTG 1833835
Query 9014 GCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAGATG 9073
|||| || ||||||||||| || || || || || || | ||| ||||||| ||||||
Sbjct 1833836 CCCATAAGTCCTTTCAAGGAGAAAGGTGCGCCAAGTTCTACCATGGTCTCACCAAAGATG 1833895
Query 9074 GCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACGTCG 9133
||| | | || || ||||| || | | | ||| || || || | || |||| |||
Sbjct 1833896 GCATCTGTGCGTGGCTTTTCTACCAAAAGGGCAGGATACAGCTCCATGGCATCGATGTCC 1833955
Query 9134 CCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175
|||||||||||||| ||||| ||||| || |||||||| |||
Sbjct 1833956 CCATAGAGGGCTTCTAACTCTGCAGCCATTTCCTTCTCTCCT 1833997
Score = 131 bits (144), Expect = 2e-25
Identities = 135/177 (76%), Gaps = 0/177 (0%)
Strand=Plus/Plus
Query 10121 TCTTACCCCATGCCCCAATCCTGTCGTGAAAGCCGGTCCTCGCACCATATCGGTCCTAAA 10180
||||||||||||||||| |||| | |||||||| ||||||||| ||| ||| | ||
Sbjct 1836379 TCTTACCCCATGCCCCAGTCCTTTGGTGAAAGCTGGTCCTCGCTTGTGATCTGTCTTGAA 1836438
Query 10181 AAATTGGTGTGTAAAGTGTTGCCCGAAAAAAGCGAACATCAGGTTGGTGCCCTGGGGATC 10240
||| || || || ||||| || | || || || ||||||| || ||||||||||| ||
Sbjct 1836439 AAACTGATGGGTGAAGTGCTGGGCAAAGAACGCAAACATCAAATTTGTGCCCTGGGGGTC 1836498
Query 10241 GGGGATAAAGGTCCTCCGAATAAAAACTTTGTCCACAATCTGTGTTGAATCGGGCAG 10297
|||| ||| || |||| | || || ||| ||||||||| | ||||||| || ||
Sbjct 1836499 AGGGACAAACGTTCTCCTTAGAAGAAATTTTTCCACAATCAATTTTGAATCAGGAAG 1836555
Score = 109 bits (120), Expect = 8e-19
Identities = 114/150 (76%), Gaps = 0/150 (0%)
Strand=Plus/Plus
Query 10387 TCACCTTTCACCCCGAGAGGAGTAGGGCAGTCACGAGGAACCGGAGGCAGAGTTCTCGTA 10446
||||||||||| || | ||||| || ||||| || || ||||| |||| ||| |||
Sbjct 1836867 TCACCTTTCACGCCCATGGGAGTGGGACAGTCGTCAGCCACAGGAGGAAGAGCTCTGGTA 1836926
Query 10447 TAATAGGATAGATTCGAAAATGCTTCCCAGCTATTGTAGCCATAATCTAAGTTGTAGAGC 10506
|||||||| | ||| ||||| ||||||||||| || |||||||| | | ||||||
Sbjct 1836927 TAATAGGAGATATTAGAAAAGGCTTCCCAGCTTTTATAGCCATACTGTGCATTGTAGGTT 1836986
Query 10507 GGGGGACTGTCAATCATCTCGGACCTGGCT 10536
|| || |||||||||| | || ||||||
Sbjct 1836987 GGCGGGCTGTCAATCAAATGTGATCTGGCT 1837016
Score = 91.5 bits (100), Expect = 2e-13
Identities = 193/286 (67%), Gaps = 4/286 (1%)
Strand=Plus/Plus
Query 9436 CCGGCAATCTGTCTAGTGAACGATTCAACTAATTGGGCTATTCCGTGCTTGATGAGGATG 9495
|| ||||| || || |||| |||||||| || |||| | || || | || | ||
Sbjct 1834657 CCAGCAATTTGCCTGCTGAATGATTCAACAAACTGGGTAAGCCCATGTTCCATTAACATA 1834716
Query 9496 GAATTGTTGTAAACGAAGTGTTCGTAACCATACTTCGCGTCGCCTATGCGAAAATCATCA 9555
|| |||||||| | || ||| | |||| | ||| | || |||| |||
Sbjct 1834717 GAGTTGTTGTAGAGAAACTGTCGATGGTTGTACTCCTGGTCTTCAATCTGAAAGGTGTCA 1834776
Query 9556 GGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGGTAC 9615
|||| || | ||||||| ||||||| || || ||||| || || || ||||| ||||||
Sbjct 1834777 GGCAGGAGGGGATGCCAGTGGTAGAGCGTGTTAAACTCAGCAGCAATGCGGTTTTGGTAC 1834836
Query 9616 TGAAA--GGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACCCGC 9673
|| || | ||| ||| || | ||| |||||||| | || | |||||| || || |
Sbjct 1834837 TGGAATTGTTGGTT--GAAAAGCAGCTCTGGGTCAAACTTCAGTTTGAAGTGATAGCCAC 1834894
Query 9674 TGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCC 9719
| | ||||| || || | | || | || ||||||||||| ||
Sbjct 1834895 TCAAGTGCTGTACGTAGTCTTCTATCACGATCTTAATGGTTTCTCC 1834940
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 723154092742600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |