Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04] 63,439 sequences; 2,073,344,508 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq135 149 9e-31 >seq135 Length=5734681 Score = 149 bits (164), Expect = 9e-31 Identities = 202/282 (72%), Gaps = 0/282 (0%) Strand=Plus/Plus Query 8894 GGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGGTTTTCACGATGTCT 8953 ||||| || | ||| || || ||||| ||||| || | || || || | ||| | Sbjct 1833716 GGACAGCCTTGCACGTTATTGCAGATGAGAGACTGGATTGAGGCAGTGTTGATGATTTTA 1833775 Query 8954 AAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACGTTC 9013 |||||||| || || || || ||||| ||||||||||| || || || || || Sbjct 1833776 AAACCTACTTCTCCACCAAAAGTGCTCGGTTTCCAGTAGTTAGGAGAACATATAGGATTG 1833835 Query 9014 GCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAGATG 9073 |||| || ||||||||||| || || || || || || | ||| ||||||| |||||| Sbjct 1833836 CCCATAAGTCCTTTCAAGGAGAAAGGTGCGCCAAGTTCTACCATGGTCTCACCAAAGATG 1833895 Query 9074 GCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACGTCG 9133 ||| | | || || ||||| || | | | ||| || || || | || |||| ||| Sbjct 1833896 GCATCTGTGCGTGGCTTTTCTACCAAAAGGGCAGGATACAGCTCCATGGCATCGATGTCC 1833955 Query 9134 CCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 |||||||||||||| ||||| ||||| || |||||||| ||| Sbjct 1833956 CCATAGAGGGCTTCTAACTCTGCAGCCATTTCCTTCTCTCCT 1833997 Score = 131 bits (144), Expect = 2e-25 Identities = 135/177 (76%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 10121 TCTTACCCCATGCCCCAATCCTGTCGTGAAAGCCGGTCCTCGCACCATATCGGTCCTAAA 10180 ||||||||||||||||| |||| | |||||||| ||||||||| ||| ||| | || Sbjct 1836379 TCTTACCCCATGCCCCAGTCCTTTGGTGAAAGCTGGTCCTCGCTTGTGATCTGTCTTGAA 1836438 Query 10181 AAATTGGTGTGTAAAGTGTTGCCCGAAAAAAGCGAACATCAGGTTGGTGCCCTGGGGATC 10240 ||| || || || ||||| || | || || || ||||||| || ||||||||||| || Sbjct 1836439 AAACTGATGGGTGAAGTGCTGGGCAAAGAACGCAAACATCAAATTTGTGCCCTGGGGGTC 1836498 Query 10241 GGGGATAAAGGTCCTCCGAATAAAAACTTTGTCCACAATCTGTGTTGAATCGGGCAG 10297 |||| ||| || |||| | || || ||| ||||||||| | ||||||| || || Sbjct 1836499 AGGGACAAACGTTCTCCTTAGAAGAAATTTTTCCACAATCAATTTTGAATCAGGAAG 1836555 Score = 109 bits (120), Expect = 8e-19 Identities = 114/150 (76%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 10387 TCACCTTTCACCCCGAGAGGAGTAGGGCAGTCACGAGGAACCGGAGGCAGAGTTCTCGTA 10446 ||||||||||| || | ||||| || ||||| || || ||||| |||| ||| ||| Sbjct 1836867 TCACCTTTCACGCCCATGGGAGTGGGACAGTCGTCAGCCACAGGAGGAAGAGCTCTGGTA 1836926 Query 10447 TAATAGGATAGATTCGAAAATGCTTCCCAGCTATTGTAGCCATAATCTAAGTTGTAGAGC 10506 |||||||| | ||| ||||| ||||||||||| || |||||||| | | |||||| Sbjct 1836927 TAATAGGAGATATTAGAAAAGGCTTCCCAGCTTTTATAGCCATACTGTGCATTGTAGGTT 1836986 Query 10507 GGGGGACTGTCAATCATCTCGGACCTGGCT 10536 || || |||||||||| | || |||||| Sbjct 1836987 GGCGGGCTGTCAATCAAATGTGATCTGGCT 1837016 Score = 91.5 bits (100), Expect = 2e-13 Identities = 193/286 (67%), Gaps = 4/286 (1%) Strand=Plus/Plus Query 9436 CCGGCAATCTGTCTAGTGAACGATTCAACTAATTGGGCTATTCCGTGCTTGATGAGGATG 9495 || ||||| || || |||| |||||||| || |||| | || || | || | || Sbjct 1834657 CCAGCAATTTGCCTGCTGAATGATTCAACAAACTGGGTAAGCCCATGTTCCATTAACATA 1834716 Query 9496 GAATTGTTGTAAACGAAGTGTTCGTAACCATACTTCGCGTCGCCTATGCGAAAATCATCA 9555 || |||||||| | || ||| | |||| | ||| | || |||| ||| Sbjct 1834717 GAGTTGTTGTAGAGAAACTGTCGATGGTTGTACTCCTGGTCTTCAATCTGAAAGGTGTCA 1834776 Query 9556 GGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGGTAC 9615 |||| || | ||||||| ||||||| || || ||||| || || || ||||| |||||| Sbjct 1834777 GGCAGGAGGGGATGCCAGTGGTAGAGCGTGTTAAACTCAGCAGCAATGCGGTTTTGGTAC 1834836 Query 9616 TGAAA--GGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACCCGC 9673 || || | ||| ||| || | ||| |||||||| | || | |||||| || || | Sbjct 1834837 TGGAATTGTTGGTT--GAAAAGCAGCTCTGGGTCAAACTTCAGTTTGAAGTGATAGCCAC 1834894 Query 9674 TGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCC 9719 | | ||||| || || | | || | || ||||||||||| || Sbjct 1834895 TCAAGTGCTGTACGTAGTCTTCTATCACGATCTTAATGGTTTCTCC 1834940 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723154092742600