Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04] 63,439 sequences; 2,073,344,508 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq782 114 2e-20 seq93 105 1e-17 >seq782 Length=486663 Score = 114 bits (126), Expect = 2e-20 Identities = 277/417 (66%), Gaps = 8/417 (2%) Strand=Plus/Minus Query 203888 TAGTACATGCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTG 203947 || ||||| || ||||||| |||| || ||| ||||| | |||||| || |||||| Sbjct 446721 TAATACATACCAGTCTTTAAACCCTGCTTCCAGCCGTAGAAGTGCATACTAGTGAGTTTG 446662 Query 203948 CTCACGTTGGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC 204007 | ||| | | ||||| |||||||||||||||||||| || ||||||| | Sbjct 446661 CCATAGTTAG------CAATGTGGATGTTCAGAGACTGGCTTTGATCAATGAAAGCACCT 446608 Query 204008 CGATCTGCGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACG 204067 | || || ||||| |||| |||||| ||||| || || ||||| || ||||| | | Sbjct 446607 CTCTCAGCTGCCATCTTGAGAATGGTTTTCTGAGAGATTTCCCATACAGTCTTATAAAGT 446548 Query 204068 TCTCTGGTGTGTTGAGGCACATCTTCCCACGTCCTGATCGAGCCGTTGTCGGCCATCAGT 204127 | | || | ||| | ||| || ||| ||||| ||| || || | | Sbjct 446547 TGCTTCAAGTCATCAGGAATTTCTGATATGCTCTGGATAGAGCCATTGCATGCAAT-AAT 446489 Query 204128 CTCA-TCCTCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGG 204186 || | | || |||| || ||||| |||| | ||||| || || | ||| || Sbjct 446488 CTGATTTTTCATCTCTTCATTCCACAAGCCCTGCTCAATCAGATCTTTCAGTAAGTGAGG 446429 Query 204187 GTTGATGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGG 204246 || | |||||||| ||||| |||| || | || ||| | | |||| |||| |||| Sbjct 446428 ATTTACAATCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTGCTGGTACATGG 446369 Query 204247 TTCGAACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGC 204303 ||| | | ||| || || || | |||||||| || || || ||||| || || Sbjct 446368 TTCAATGGACTCATTATTTCCCAGGATCTGAGCAGTTGAAGCAGTAGGCATCGGGGC 446312 >seq93 Length=2374459 Score = 105 bits (116), Expect = 1e-17 Identities = 114/151 (75%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 203910 CCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCGGCCATGT 203969 ||| || ||| ||||| | |||||| || ||||||| ||| || || || |||| Sbjct 36712 CCTGCTTCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATGT 36771 Query 203970 GAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGCGGCCATATTGATAA 204029 | |||||||||||||||||||| || ||||||| | | || || ||||| |||| || Sbjct 36772 GGATGTTCAGAGACTGGCTTTGATCAATGAAAGCACCTCTCTCAGCTGCCATCTTGAGAA 36831 Query 204030 TGGTCTTCTGCGAAATCTCCCACACCGTCTT 204060 |||| ||||| || || ||||| || ||||| Sbjct 36832 TGGTTTTCTGAGAGATTTCCCATACAGTCTT 36862 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 794524651865840