Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04]
63,439 sequences; 2,073,344,508 total letters
Query= NC_013668.3
Length=248526
Score E
Sequences producing significant alignments: (Bits) Value
seq782 114 2e-20
seq93 105 1e-17
>seq782
Length=486663
Score = 114 bits (126), Expect = 2e-20
Identities = 277/417 (66%), Gaps = 8/417 (2%)
Strand=Plus/Minus
Query 203888 TAGTACATGCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTG 203947
|| ||||| || ||||||| |||| || ||| ||||| | |||||| || ||||||
Sbjct 446721 TAATACATACCAGTCTTTAAACCCTGCTTCCAGCCGTAGAAGTGCATACTAGTGAGTTTG 446662
Query 203948 CTCACGTTGGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC 204007
| ||| | | ||||| |||||||||||||||||||| || ||||||| |
Sbjct 446661 CCATAGTTAG------CAATGTGGATGTTCAGAGACTGGCTTTGATCAATGAAAGCACCT 446608
Query 204008 CGATCTGCGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACG 204067
| || || ||||| |||| |||||| ||||| || || ||||| || ||||| | |
Sbjct 446607 CTCTCAGCTGCCATCTTGAGAATGGTTTTCTGAGAGATTTCCCATACAGTCTTATAAAGT 446548
Query 204068 TCTCTGGTGTGTTGAGGCACATCTTCCCACGTCCTGATCGAGCCGTTGTCGGCCATCAGT 204127
| | || | ||| | ||| || ||| ||||| ||| || || | |
Sbjct 446547 TGCTTCAAGTCATCAGGAATTTCTGATATGCTCTGGATAGAGCCATTGCATGCAAT-AAT 446489
Query 204128 CTCA-TCCTCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGG 204186
|| | | || |||| || ||||| |||| | ||||| || || | ||| ||
Sbjct 446488 CTGATTTTTCATCTCTTCATTCCACAAGCCCTGCTCAATCAGATCTTTCAGTAAGTGAGG 446429
Query 204187 GTTGATGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGG 204246
|| | |||||||| ||||| |||| || | || ||| | | |||| |||| ||||
Sbjct 446428 ATTTACAATCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTGCTGGTACATGG 446369
Query 204247 TTCGAACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGC 204303
||| | | ||| || || || | |||||||| || || || ||||| || ||
Sbjct 446368 TTCAATGGACTCATTATTTCCCAGGATCTGAGCAGTTGAAGCAGTAGGCATCGGGGC 446312
>seq93
Length=2374459
Score = 105 bits (116), Expect = 1e-17
Identities = 114/151 (75%), Gaps = 0/151 (0%)
Strand=Plus/Plus
Query 203910 CCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCGGCCATGT 203969
||| || ||| ||||| | |||||| || ||||||| ||| || || || ||||
Sbjct 36712 CCTGCTTCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATGT 36771
Query 203970 GAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGCGGCCATATTGATAA 204029
| |||||||||||||||||||| || ||||||| | | || || ||||| |||| ||
Sbjct 36772 GGATGTTCAGAGACTGGCTTTGATCAATGAAAGCACCTCTCTCAGCTGCCATCTTGAGAA 36831
Query 204030 TGGTCTTCTGCGAAATCTCCCACACCGTCTT 204060
|||| ||||| || || ||||| || |||||
Sbjct 36832 TGGTTTTCTGAGAGATTTCCCATACAGTCTT 36862
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 794524651865840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |