Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04] 63,439 sequences; 2,073,344,508 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq475 140 4e-28 seq273 136 4e-27 seq683 104 3e-17 seq21504 98.7 1e-15 seq10281 96.9 4e-15 seq188 95.1 1e-14 seq19370 89.7 6e-13 seq152 87.8 2e-12 >seq475 Length=1570329 Score = 140 bits (154), Expect = 4e-28 Identities = 170/232 (73%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 46366 GCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGA 46425 ||| || || | ||||| ||||| |||| || ||| || ||||| |||||||| || Sbjct 1256107 GCCACCCCTCAGACGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGA 1256048 Query 46426 TAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGG 46485 |||||||| | || || ||||||||||| || || || | | ||||||||| | || Sbjct 1256047 AAGAGTGCGGCCATCTTCCAGCTGCTTGCCCGCAAAGATGAGCCTCTGCTGGTCAGGGGG 1255988 Query 46486 CACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 46545 | || |||||| ||| |||||| ||| | || | | |||||||| | ||||| Sbjct 1255987 GATGCCCTCCTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCCAC 1255928 Query 46546 ATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 |||| |||||||| ||||| ||||| || || || || |||||||||||| Sbjct 1255927 CTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAAATTTGCATTTTG 1255876 >seq273 Length=4066651 Score = 136 bits (150), Expect = 4e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||| || || |||| ||||| |||| || ||| || ||||| ||||||||||| Sbjct 887189 CCTCCCCTCAAGCGCAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCGGAC 887248 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || ||||| |||| || | ||| |||||||| || ||||| | ||||||||| | || Sbjct 887249 AGGGTGCGTCCGTCTTCCAACTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGG 887308 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | || ||| ||||| |||||| ||||| || | | ||||| || | ||||| Sbjct 887309 ATGCCCTCTTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACC 887368 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 |||| |||||||| || || |||| || || |||||||| |||||| Sbjct 887369 TCCAGGGTGATGGTCTTACCGGTCAAGGTCTTCACAAAGATCTGCATT 887416 >seq683 Length=758919 Score = 104 bits (114), Expect = 3e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 ||||| |||| || ||| || ||||| || ||||| || |||||||| | || || Sbjct 117142 CACCAAGTGCAGAGTGGACTCTTTCTGGATGTTATAGTCTGAGAGAGTGCGGCCATCCTC 117201 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 ||||| ||||| || || |||| |||||||||| | || | || ||||||||| Sbjct 117202 CAGCTGTTTGCCCGCAAAAATCAGATGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCTTG 117261 Query 46504 GATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 ||| || |||| | | | ||||| || | | || || | |||||||| || Sbjct 117262 GATTTTGGCTTTGACATTTTCAATAGTGTCACTGGGCTTGACCTCGAGTGTGATGGTCTT 117321 Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||||||||| ||||| |||||||| ||||| Sbjct 117322 GCCCGTCAGGGTTTTCACAAAGATCTGCAT 117351 >seq21504 Length=484 Score = 98.7 bits (108), Expect = 1e-15 Identities = 141/195 (72%), Gaps = 8/195 (4%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| ||||| |||||||||| | |||||| | || || ||||||||||| ||||| Sbjct 433 TCCTTCTGGATGTTGTAGTCGGCCAAAGTGCGACCATCCTCAAGCTGCTTGCCAGCGAAG 374 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCG-T 46521 || | ||||||||||| | || | || |||||||||| ||| || ||| || | Sbjct 373 ATGAGACGCTGCTGGTCCGGTGGGATGCCCTCCTTGTCC-TGAATTTTGGCTTTCACGTT 315 Query 46522 CGCCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTT 46578 | | ||||| |||| ||||| || | ||||| || ||||| || || || || Sbjct 314 ATCAATGGTGTCAGAGCTC---TCCACTTCGAGGGTGATAGTCTTGCCTGTAAGGGTCTT 258 Query 46579 AACAAAGATTTGCAT 46593 || ||||||||||| Sbjct 257 GACGAAGATTTGCAT 243 >seq10281 Length=966 Score = 96.9 bits (106), Expect = 4e-15 Identities = 152/214 (71%), Gaps = 8/214 (4%) Strand=Plus/Minus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 ||| ||||| | ||| |||||| ||||| |||||||| | ||||| || | || || Sbjct 472 CACGAGATGAAGTGTCGACTCCTTCTGGATGTTGTAGTCAGCAAGAGTCCGGCCATCCTC 413 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 ||||||||| ||||| || ||||| | |||||||| | || | | |||||| || Sbjct 412 GAGCTGCTTTCCGGCAAAGATCAACCTTTGCTGGTCCGGTGGTATACCCTCCTTATCTTG 353 Query 46504 GATCTTCTTCTTGAGCGTCG-CCACCGTGTC---GCTCGATTCCACATCCACCGTGATGG 46559 || || ||||| ||| | | || ||||| |||| || || || | ||||| | Sbjct 352 AATTTTAGCCTTGA-CGTTGTCGACGGTGTCGGAGCTC---TCGACCTCGAGGGTGATCG 297 Query 46560 TTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | || ||||| || ||||| || ||||| ||||| Sbjct 296 TCTTCCCCGTTAGGGTTTTGACGAAGATCTGCAT 263 Score = 93.3 bits (102), Expect = 5e-14 Identities = 143/200 (72%), Gaps = 8/200 (4%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||| || ||||| |||||||||| | ||| || |||| |||||||| ||||||||||| Sbjct 226 CTCTTTCTGGATGTTGTAGTCGGCCAAAGTTCGGCCGTCTTCGAGCTGTTTGCCGGCGAA 167 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | | ||||||||| | ||| | || ||||| ||| |||||| ||| | ||| Sbjct 166 GATAAGCCTCTGCTGGTCCGGCGGGATGCCTTCCTTATCCTGGATCTT-GACTTTAACGT 108 Query 46522 CG-CCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTT 46577 | | | ||||| ||| |||||| || | ||||| || || || || || || | Sbjct 107 TGTCGATGGTGTCAGAGCT---TTCCACCTCGAGGGTGATTGTCTTTCCGGTGAGAGTCT 51 Query 46578 TAACAAAGATTTGCATTTTG 46597 ||| ||| | ||||| ||| Sbjct 50 TAATGAAGGTCTGCATCTTG 31 >seq188 Length=3215107 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||| || |||||||| ||||| || |||||||| | || || ||||| ||||| || || Sbjct 2830935 CTCTTTCTGGATATTATAGTCTGAGAGAGTGCGGCCATCCTCCAGCTGTTTGCCCGCAAA 2830876 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| ||||||||||| | || | || |||||||| ||| || |||| | Sbjct 2830875 AATCAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTGTTTTGGATTTTAGCTTTGACATT 2830816 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | ||||| | | | || || | |||||||| ||||| || || || || || Sbjct 2830815 CTCAATAGTGTCATTGGGCTTGACCTCAAGTGTGATGGTCTTGCCTGTTAGGGTCTTCAC 2830756 Query 46582 AAAGATTTGCAT 46593 |||||| ||||| Sbjct 2830755 AAAGATCTGCAT 2830744 >seq19370 Length=533 Score = 89.7 bits (98), Expect = 6e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||| || | | || ||| || |||| |||| || ||||| ||||||||||||| Sbjct 212 CCTCCCCTAAGCCTCAGCACAAGGTGCAGTGTAGATTCTTTTTGAATATTGTAGTCGGCC 153 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 | || || | || |||||||| || |||||||| ||||| | |||||| || | || Sbjct 152 AAGGTACGGCCATCCTCGAGCTGTTTTCCGGCGAAGATCAACCTCTGCTGATCCGGAGGG 93 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | || |||||||| || || ||||| | | | |||||||| || || Sbjct 92 ATGCCTTCCTTGTCTTGAATTTTGGCCTTGACATTGTCGATGGTGTCGCTGCTCTCGACC 33 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTT 46578 || | |||||||| ||||| || || ||||| Sbjct 32 TCGAGAGTGATGGTCTTGCCGGTTAGGGTTTT 1 >seq152 Length=4697258 Score = 87.8 bits (96), Expect = 2e-12 Identities = 146/209 (70%), Gaps = 3/209 (1%) Strand=Plus/Plus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 ||||| ||| | || |||||| ||||| || ||||||| ||||||| | || || Sbjct 3919903 CACCAAGTGCCAAGTGGACTCCTTCTGGATGTTAGAGTCGGAGAGAGTGCAGCCATCCTC 3919962 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 ||||||||||| || || |||| |||||||||| | || | || ||||||||| Sbjct 3919963 CAGCTGCTTGCCCGCAAAAATCAGATGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCTTG 3920022 Query 46504 GATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 ||| || ||| |||| | | ||||| || | || | || | | |||||| || Sbjct 3920023 GAT-TTTAGCTTTGGCGT--TCTCAGTGTCACTGGGCTCGGCCTCGAGTGGGATGGTCTT 3920079 Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCA 46592 |||| || || || |||||||| |||| Sbjct 3920080 GCCCACAAGGGTCTTCACAAAGATCTGCA 3920108 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 564790173014280