Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04]
63,439 sequences; 2,073,344,508 total letters
Query= NC_013772.1
Length=176677
Score E
Sequences producing significant alignments: (Bits) Value
seq475 140 4e-28
seq273 136 4e-27
seq683 104 3e-17
seq21504 98.7 1e-15
seq10281 96.9 4e-15
seq188 95.1 1e-14
seq19370 89.7 6e-13
seq152 87.8 2e-12
>seq475
Length=1570329
Score = 140 bits (154), Expect = 4e-28
Identities = 170/232 (73%), Gaps = 0/232 (0%)
Strand=Plus/Minus
Query 46366 GCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGA 46425
||| || || | ||||| ||||| |||| || ||| || ||||| |||||||| ||
Sbjct 1256107 GCCACCCCTCAGACGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGA 1256048
Query 46426 TAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGG 46485
|||||||| | || || ||||||||||| || || || | | ||||||||| | ||
Sbjct 1256047 AAGAGTGCGGCCATCTTCCAGCTGCTTGCCCGCAAAGATGAGCCTCTGCTGGTCAGGGGG 1255988
Query 46486 CACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 46545
| || |||||| ||| |||||| ||| | || | | |||||||| | |||||
Sbjct 1255987 GATGCCCTCCTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCCAC 1255928
Query 46546 ATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597
|||| |||||||| ||||| ||||| || || || || ||||||||||||
Sbjct 1255927 CTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAAATTTGCATTTTG 1255876
>seq273
Length=4066651
Score = 136 bits (150), Expect = 4e-27
Identities = 167/228 (73%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426
||||| || || |||| ||||| |||| || ||| || ||||| |||||||||||
Sbjct 887189 CCTCCCCTCAAGCGCAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCGGAC 887248
Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486
|| ||||| |||| || | ||| |||||||| || ||||| | ||||||||| | ||
Sbjct 887249 AGGGTGCGTCCGTCTTCCAACTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGG 887308
Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546
| || ||| ||||| |||||| ||||| || | | ||||| || | |||||
Sbjct 887309 ATGCCCTCTTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACC 887368
Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594
|||| |||||||| || || |||| || || |||||||| ||||||
Sbjct 887369 TCCAGGGTGATGGTCTTACCGGTCAAGGTCTTCACAAAGATCTGCATT 887416
>seq683
Length=758919
Score = 104 bits (114), Expect = 3e-17
Identities = 149/210 (71%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443
||||| |||| || ||| || ||||| || ||||| || |||||||| | || ||
Sbjct 117142 CACCAAGTGCAGAGTGGACTCTTTCTGGATGTTATAGTCTGAGAGAGTGCGGCCATCCTC 117201
Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503
||||| ||||| || || |||| |||||||||| | || | || |||||||||
Sbjct 117202 CAGCTGTTTGCCCGCAAAAATCAGATGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCTTG 117261
Query 46504 GATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563
||| || |||| | | | ||||| || | | || || | |||||||| ||
Sbjct 117262 GATTTTGGCTTTGACATTTTCAATAGTGTCACTGGGCTTGACCTCGAGTGTGATGGTCTT 117321
Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
||||||||| ||||| |||||||| |||||
Sbjct 117322 GCCCGTCAGGGTTTTCACAAAGATCTGCAT 117351
>seq21504
Length=484
Score = 98.7 bits (108), Expect = 1e-15
Identities = 141/195 (72%), Gaps = 8/195 (4%)
Strand=Plus/Minus
Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462
||||| ||||| |||||||||| | |||||| | || || ||||||||||| |||||
Sbjct 433 TCCTTCTGGATGTTGTAGTCGGCCAAAGTGCGACCATCCTCAAGCTGCTTGCCAGCGAAG 374
Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCG-T 46521
|| | ||||||||||| | || | || |||||||||| ||| || ||| || |
Sbjct 373 ATGAGACGCTGCTGGTCCGGTGGGATGCCCTCCTTGTCC-TGAATTTTGGCTTTCACGTT 315
Query 46522 CGCCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTT 46578
| | ||||| |||| ||||| || | ||||| || ||||| || || || ||
Sbjct 314 ATCAATGGTGTCAGAGCTC---TCCACTTCGAGGGTGATAGTCTTGCCTGTAAGGGTCTT 258
Query 46579 AACAAAGATTTGCAT 46593
|| |||||||||||
Sbjct 257 GACGAAGATTTGCAT 243
>seq10281
Length=966
Score = 96.9 bits (106), Expect = 4e-15
Identities = 152/214 (71%), Gaps = 8/214 (4%)
Strand=Plus/Minus
Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443
||| ||||| | ||| |||||| ||||| |||||||| | ||||| || | || ||
Sbjct 472 CACGAGATGAAGTGTCGACTCCTTCTGGATGTTGTAGTCAGCAAGAGTCCGGCCATCCTC 413
Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503
||||||||| ||||| || ||||| | |||||||| | || | | |||||| ||
Sbjct 412 GAGCTGCTTTCCGGCAAAGATCAACCTTTGCTGGTCCGGTGGTATACCCTCCTTATCTTG 353
Query 46504 GATCTTCTTCTTGAGCGTCG-CCACCGTGTC---GCTCGATTCCACATCCACCGTGATGG 46559
|| || ||||| ||| | | || ||||| |||| || || || | ||||| |
Sbjct 352 AATTTTAGCCTTGA-CGTTGTCGACGGTGTCGGAGCTC---TCGACCTCGAGGGTGATCG 297
Query 46560 TTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
| || ||||| || ||||| || ||||| |||||
Sbjct 296 TCTTCCCCGTTAGGGTTTTGACGAAGATCTGCAT 263
Score = 93.3 bits (102), Expect = 5e-14
Identities = 143/200 (72%), Gaps = 8/200 (4%)
Strand=Plus/Minus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
||| || ||||| |||||||||| | ||| || |||| |||||||| |||||||||||
Sbjct 226 CTCTTTCTGGATGTTGTAGTCGGCCAAAGTTCGGCCGTCTTCGAGCTGTTTGCCGGCGAA 167
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
|| | | ||||||||| | ||| | || ||||| ||| |||||| ||| | |||
Sbjct 166 GATAAGCCTCTGCTGGTCCGGCGGGATGCCTTCCTTATCCTGGATCTT-GACTTTAACGT 108
Query 46522 CG-CCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTT 46577
| | | ||||| ||| |||||| || | ||||| || || || || || || |
Sbjct 107 TGTCGATGGTGTCAGAGCT---TTCCACCTCGAGGGTGATTGTCTTTCCGGTGAGAGTCT 51
Query 46578 TAACAAAGATTTGCATTTTG 46597
||| ||| | ||||| |||
Sbjct 50 TAATGAAGGTCTGCATCTTG 31
>seq188
Length=3215107
Score = 95.1 bits (104), Expect = 1e-14
Identities = 136/192 (71%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
||| || |||||||| ||||| || |||||||| | || || ||||| ||||| || ||
Sbjct 2830935 CTCTTTCTGGATATTATAGTCTGAGAGAGTGCGGCCATCCTCCAGCTGTTTGCCCGCAAA 2830876
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
|||| ||||||||||| | || | || |||||||| ||| || |||| |
Sbjct 2830875 AATCAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTGTTTTGGATTTTAGCTTTGACATT 2830816
Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581
| | | ||||| | | | || || | |||||||| ||||| || || || || ||
Sbjct 2830815 CTCAATAGTGTCATTGGGCTTGACCTCAAGTGTGATGGTCTTGCCTGTTAGGGTCTTCAC 2830756
Query 46582 AAAGATTTGCAT 46593
|||||| |||||
Sbjct 2830755 AAAGATCTGCAT 2830744
>seq19370
Length=533
Score = 89.7 bits (98), Expect = 6e-13
Identities = 147/212 (69%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426
||||| || | | || ||| || |||| |||| || ||||| |||||||||||||
Sbjct 212 CCTCCCCTAAGCCTCAGCACAAGGTGCAGTGTAGATTCTTTTTGAATATTGTAGTCGGCC 153
Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486
| || || | || |||||||| || |||||||| ||||| | |||||| || | ||
Sbjct 152 AAGGTACGGCCATCCTCGAGCTGTTTTCCGGCGAAGATCAACCTCTGCTGATCCGGAGGG 93
Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546
| || |||||||| || || ||||| | | | |||||||| || ||
Sbjct 92 ATGCCTTCCTTGTCTTGAATTTTGGCCTTGACATTGTCGATGGTGTCGCTGCTCTCGACC 33
Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTT 46578
|| | |||||||| ||||| || || |||||
Sbjct 32 TCGAGAGTGATGGTCTTGCCGGTTAGGGTTTT 1
>seq152
Length=4697258
Score = 87.8 bits (96), Expect = 2e-12
Identities = 146/209 (70%), Gaps = 3/209 (1%)
Strand=Plus/Plus
Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443
||||| ||| | || |||||| ||||| || ||||||| ||||||| | || ||
Sbjct 3919903 CACCAAGTGCCAAGTGGACTCCTTCTGGATGTTAGAGTCGGAGAGAGTGCAGCCATCCTC 3919962
Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503
||||||||||| || || |||| |||||||||| | || | || |||||||||
Sbjct 3919963 CAGCTGCTTGCCCGCAAAAATCAGATGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCTTG 3920022
Query 46504 GATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563
||| || ||| |||| | | ||||| || | || | || | | |||||| ||
Sbjct 3920023 GAT-TTTAGCTTTGGCGT--TCTCAGTGTCACTGGGCTCGGCCTCGAGTGGGATGGTCTT 3920079
Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCA 46592
|||| || || || |||||||| ||||
Sbjct 3920080 GCCCACAAGGGTCTTCACAAAGATCTGCA 3920108
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 564790173014280
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