Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04] 63,439 sequences; 2,073,344,508 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq10281 91.5 1e-13 seq273 87.8 1e-12 >seq10281 Length=966 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| || || | ||||| ||||| || | || || || || || || || || || Sbjct 718 GCCACCACGGAGACGCAAGACCAAGTGAAGCGTAGACTCCTTCTGGATGTTGTAGTCAGC 659 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 |||| || | || || | || || || |||| || || | ||||||||||| || Sbjct 658 CAAAGTCCGGCCGTCTTCGAGCTGCTTTCCTGCAAAGATCAATCTCTGCTGATCCGGTGG 599 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTTTCCA 39670 | |||||||||||| ||||| ||| | ||| | | | || || | ||| |||| Sbjct 598 GATGCCTTCTTTGTCTTGGATTTTGGCTTTCA-CGTTGTCGATGGTATCAGAGCTCTCCA 540 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | ||||||||||| || || ||||| || ||||| || ||||| ||||| Sbjct 539 CCTCCAAAGTAATCGTCTTCCCCGTCAAGGTTTTAACAAAGATTTGCAT 491 >seq273 Length=4066651 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || | ||| ||||| |||| |||| |||| ||||| || || || || |||| | Sbjct 887189 CCTCCCCTCAAGCGCAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCGGAC 887248 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | |||| | || ||||| ||||| ||| |||| || || | |||||| || | ||| Sbjct 887249 AGGGTGCGTCCGTCTTCCAACTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGG 887308 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTC--TGCGCTTTCCA 39670 | ||| |||||||| || || || | || | | ||||| || ||| ||| Sbjct 887309 ATGCCCTCTTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCT--CCA 887366 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | |||| || || || ||||| || || || || || ||||||||||| Sbjct 887367 CCTCCAGGGTGATGGTCTTACCGGTCAAGGTCTTCACAAAGATCTGCAT 887415 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347101026743087