Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04]
63,439 sequences; 2,073,344,508 total letters
Query= NC_013797.1
Length=108592
Score E
Sequences producing significant alignments: (Bits) Value
seq10281 91.5 1e-13
seq273 87.8 1e-12
>seq10281
Length=966
Score = 91.5 bits (100), Expect = 1e-13
Identities = 159/229 (69%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551
||| || || | ||||| ||||| || | || || || || || || || || ||
Sbjct 718 GCCACCACGGAGACGCAAGACCAAGTGAAGCGTAGACTCCTTCTGGATGTTGTAGTCAGC 659
Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611
|||| || | || || | || || || |||| || || | ||||||||||| ||
Sbjct 658 CAAAGTCCGGCCGTCTTCGAGCTGCTTTCCTGCAAAGATCAATCTCTGCTGATCCGGTGG 599
Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTTTCCA 39670
| |||||||||||| ||||| ||| | ||| | | | || || | ||| ||||
Sbjct 598 GATGCCTTCTTTGTCTTGGATTTTGGCTTTCA-CGTTGTCGATGGTATCAGAGCTCTCCA 540
Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719
| ||||||||||| || || ||||| || ||||| || ||||| |||||
Sbjct 539 CCTCCAAAGTAATCGTCTTCCCCGTCAAGGTTTTAACAAAGATTTGCAT 491
>seq273
Length=4066651
Score = 87.8 bits (96), Expect = 1e-12
Identities = 158/229 (69%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552
|| || | ||| ||||| |||| |||| |||| ||||| || || || || |||| |
Sbjct 887189 CCTCCCCTCAAGCGCAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCGGAC 887248
Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612
| |||| | || ||||| ||||| ||| |||| || || | |||||| || | |||
Sbjct 887249 AGGGTGCGTCCGTCTTCCAACTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGG 887308
Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTC--TGCGCTTTCCA 39670
| ||| |||||||| || || || | || | | ||||| || ||| |||
Sbjct 887309 ATGCCCTCTTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCT--CCA 887366
Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719
| |||| || || || ||||| || || || || || |||||||||||
Sbjct 887367 CCTCCAGGGTGATGGTCTTACCGGTCAAGGTCTTCACAAAGATCTGCAT 887415
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 347101026743087
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |