Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04] 63,439 sequences; 2,073,344,508 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq45643 105 8e-18 seq17663 104 3e-17 seq604 93.3 5e-14 seq251 93.3 5e-14 seq220 93.3 5e-14 seq56 82.4 9e-11 >seq45643 Length=245 Score = 105 bits (116), Expect = 8e-18 Identities = 124/165 (75%), Gaps = 2/165 (1%) Strand=Plus/Minus Query 110272 ACATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCG-GT 110330 ||| || |||| | |||||| ||||||||||||||||||| ||| || | || | | || Sbjct 166 ACAAATCTGGGTAAAGCAATTGACGCAAGATTGCACACAGCAGTTTC-TGTTGGACTAGT 108 Query 110331 GTATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATT 110390 ||||| | ||||| || || || ||||| ||| ||| ||||| ||| | |||||| Sbjct 107 GTATTGAATGATTTCAGTGCATAAATTGGATGACTTTATGGTACCCAGGTTTTGCTGATT 48 Query 110391 CGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACC 110435 |||| |||||||| |||||| | ||||||||||| || || Sbjct 47 GCTTTTGCTGTTGCATGAATCCTTGAAAAGCATGTATGGTGTTCC 3 >seq17663 Length=579 Score = 104 bits (114), Expect = 3e-17 Identities = 114/150 (76%), Gaps = 4/150 (3%) Strand=Plus/Plus Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAG--CAAAGTCCAGGCATGAGTC 119565 |||||||| ||||| | || || ||||| || ||| |||| || ||||| || | Sbjct 232 TGAAGCCCCTCATCTCTGGATATAAGCTCGTTTGAGAAAGTCAAA--CCCGGCATAAGAC 289 Query 119566 CTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACAC 119625 |||| ||||| ||||| |||||||||||||| ||||| || |||||||| || || || | Sbjct 290 CTCTCTTCTTAAGCCAGAAGATGGCACAAAAGCTTCCCGAGAAGAAGATTCCTTCGACGC 349 Query 119626 AGGCGAAAGCGAATAGACGCTCAGCAAAAG 119655 | || ||||| | || | | ||||||||| Sbjct 350 ATGCAAAAGCAACCAGCCTCACAGCAAAAG 379 >seq604 Length=510426 Score = 93.3 bits (102), Expect = 5e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 ||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||| Sbjct 223732 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 223790 Score = 93.3 bits (102), Expect = 5e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 ||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||| Sbjct 279820 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 279762 Score = 93.3 bits (102), Expect = 5e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 ||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||| Sbjct 348486 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 348544 >seq251 Length=3828993 Score = 93.3 bits (102), Expect = 5e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 ||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||| Sbjct 1556768 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 1556826 >seq220 Length=1446099 Score = 93.3 bits (102), Expect = 5e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 ||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||| Sbjct 511197 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 511255 Score = 93.3 bits (102), Expect = 5e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 ||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||| Sbjct 543031 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 542973 >seq56 Length=7808877 Score = 82.4 bits (90), Expect = 9e-11 Identities = 53/58 (91%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCG 136774 ||||||||||||||| ||||||||||| ||||| |||||||||| ||||||| ||||| Sbjct 5730402 TAGCTCAGTTGGTTATAGCGTGGTGCTGATAACACCAAGGTCACCGGTTCGATCCCCG 5730459 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588508949394200