Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04]
63,439 sequences; 2,073,344,508 total letters
Query= NC_014767.1
Length=184095
Score E
Sequences producing significant alignments: (Bits) Value
seq45643 105 8e-18
seq17663 104 3e-17
seq604 93.3 5e-14
seq251 93.3 5e-14
seq220 93.3 5e-14
seq56 82.4 9e-11
>seq45643
Length=245
Score = 105 bits (116), Expect = 8e-18
Identities = 124/165 (75%), Gaps = 2/165 (1%)
Strand=Plus/Minus
Query 110272 ACATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCG-GT 110330
||| || |||| | |||||| ||||||||||||||||||| ||| || | || | | ||
Sbjct 166 ACAAATCTGGGTAAAGCAATTGACGCAAGATTGCACACAGCAGTTTC-TGTTGGACTAGT 108
Query 110331 GTATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATT 110390
||||| | ||||| || || || ||||| ||| ||| ||||| ||| | ||||||
Sbjct 107 GTATTGAATGATTTCAGTGCATAAATTGGATGACTTTATGGTACCCAGGTTTTGCTGATT 48
Query 110391 CGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACC 110435
|||| |||||||| |||||| | ||||||||||| || ||
Sbjct 47 GCTTTTGCTGTTGCATGAATCCTTGAAAAGCATGTATGGTGTTCC 3
>seq17663
Length=579
Score = 104 bits (114), Expect = 3e-17
Identities = 114/150 (76%), Gaps = 4/150 (3%)
Strand=Plus/Plus
Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAG--CAAAGTCCAGGCATGAGTC 119565
|||||||| ||||| | || || ||||| || ||| |||| || ||||| || |
Sbjct 232 TGAAGCCCCTCATCTCTGGATATAAGCTCGTTTGAGAAAGTCAAA--CCCGGCATAAGAC 289
Query 119566 CTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACAC 119625
|||| ||||| ||||| |||||||||||||| ||||| || |||||||| || || || |
Sbjct 290 CTCTCTTCTTAAGCCAGAAGATGGCACAAAAGCTTCCCGAGAAGAAGATTCCTTCGACGC 349
Query 119626 AGGCGAAAGCGAATAGACGCTCAGCAAAAG 119655
| || ||||| | || | | |||||||||
Sbjct 350 ATGCAAAAGCAACCAGCCTCACAGCAAAAG 379
>seq604
Length=510426
Score = 93.3 bits (102), Expect = 5e-14
Identities = 56/59 (95%), Gaps = 0/59 (0%)
Strand=Plus/Plus
Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775
||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||
Sbjct 223732 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 223790
Score = 93.3 bits (102), Expect = 5e-14
Identities = 56/59 (95%), Gaps = 0/59 (0%)
Strand=Plus/Minus
Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775
||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||
Sbjct 279820 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 279762
Score = 93.3 bits (102), Expect = 5e-14
Identities = 56/59 (95%), Gaps = 0/59 (0%)
Strand=Plus/Plus
Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775
||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||
Sbjct 348486 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 348544
>seq251
Length=3828993
Score = 93.3 bits (102), Expect = 5e-14
Identities = 56/59 (95%), Gaps = 0/59 (0%)
Strand=Plus/Plus
Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775
||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||
Sbjct 1556768 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 1556826
>seq220
Length=1446099
Score = 93.3 bits (102), Expect = 5e-14
Identities = 56/59 (95%), Gaps = 0/59 (0%)
Strand=Plus/Plus
Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775
||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||
Sbjct 511197 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 511255
Score = 93.3 bits (102), Expect = 5e-14
Identities = 56/59 (95%), Gaps = 0/59 (0%)
Strand=Plus/Minus
Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775
||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||
Sbjct 543031 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 542973
>seq56
Length=7808877
Score = 82.4 bits (90), Expect = 9e-11
Identities = 53/58 (91%), Gaps = 0/58 (0%)
Strand=Plus/Plus
Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCG 136774
||||||||||||||| ||||||||||| ||||| |||||||||| ||||||| |||||
Sbjct 5730402 TAGCTCAGTTGGTTATAGCGTGGTGCTGATAACACCAAGGTCACCGGTTCGATCCCCG 5730459
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 588508949394200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |