Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04]
63,439 sequences; 2,073,344,508 total letters
Query= NC_014789.1
Length=184409
Score E
Sequences producing significant alignments: (Bits) Value
seq8305 87.8 2e-12
seq93 86.0 7e-12
>seq8305
Length=1166
Score = 87.8 bits (96), Expect = 2e-12
Identities = 129/181 (71%), Gaps = 4/181 (2%)
Strand=Plus/Plus
Query 9225 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAAA 9284
||||| | |||| | ||| || || || | ||||| || ||| | | | | |||
Sbjct 973 TCAAGAACATCAGGTCTATTGGTAGCAGCCAAGACAATAACACCGGAGTTACCAGAAAAG 1032
Query 9285 CCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATA 9344
||||||||||| || ||||| || ||||| || ||||||| |||||||| | | |
Sbjct 1033 CCATCCATCTCCGTTAAAAGCTGATTAATCGTCTGTTCCCTCTCATCATTTCC--ACCTC 1090
Query 9345 CC--ACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACATG 9402
|| ||| || | | |||| | || || |||||||||||||| || || |||||||| |
Sbjct 1091 CCATACCTGCTCCTCTTTGCCTACCAACAGCATCAATCTCATCTATAAAAACAATACAAG 1150
Query 9403 G 9403
|
Sbjct 1151 G 1151
>seq93
Length=2374459
Score = 86.0 bits (94), Expect = 7e-12
Identities = 101/137 (74%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 106492 CTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCC 106551
|||||| || ||| ||||||| |||||||| |||| ||| | || ||||| ||
Sbjct 51171 CTCATCTTTGCTTGTATACTCTACTATTTCTGTGCACAGATTGCTGCATTTGATCGTTCC 51230
Query 106552 CAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCC 106611
|| |||| ||||| || || ||| || | ||| |||||||||||||| || || ||
Sbjct 51231 CAGGTTCTGCTGGTTGCTTTTCCGGTTACAGGAATCTTTGTAGAGCATGTATGGGGTACC 51290
Query 106612 CGTCTCCGTCTGTGACT 106628
||||| ||||| ||||
Sbjct 51291 TGTCTCTGTCTGCGACT 51307
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 589512952600360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |