Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04] 63,439 sequences; 2,073,344,508 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq8305 87.8 2e-12 seq93 86.0 7e-12 >seq8305 Length=1166 Score = 87.8 bits (96), Expect = 2e-12 Identities = 129/181 (71%), Gaps = 4/181 (2%) Strand=Plus/Plus Query 9225 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAAA 9284 ||||| | |||| | ||| || || || | ||||| || ||| | | | | ||| Sbjct 973 TCAAGAACATCAGGTCTATTGGTAGCAGCCAAGACAATAACACCGGAGTTACCAGAAAAG 1032 Query 9285 CCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATA 9344 ||||||||||| || ||||| || ||||| || ||||||| |||||||| | | | Sbjct 1033 CCATCCATCTCCGTTAAAAGCTGATTAATCGTCTGTTCCCTCTCATCATTTCC--ACCTC 1090 Query 9345 CC--ACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACATG 9402 || ||| || | | |||| | || || |||||||||||||| || || |||||||| | Sbjct 1091 CCATACCTGCTCCTCTTTGCCTACCAACAGCATCAATCTCATCTATAAAAACAATACAAG 1150 Query 9403 G 9403 | Sbjct 1151 G 1151 >seq93 Length=2374459 Score = 86.0 bits (94), Expect = 7e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 106492 CTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCC 106551 |||||| || ||| ||||||| |||||||| |||| ||| | || ||||| || Sbjct 51171 CTCATCTTTGCTTGTATACTCTACTATTTCTGTGCACAGATTGCTGCATTTGATCGTTCC 51230 Query 106552 CAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCC 106611 || |||| ||||| || || ||| || | ||| |||||||||||||| || || || Sbjct 51231 CAGGTTCTGCTGGTTGCTTTTCCGGTTACAGGAATCTTTGTAGAGCATGTATGGGGTACC 51290 Query 106612 CGTCTCCGTCTGTGACT 106628 ||||| ||||| |||| Sbjct 51291 TGTCTCTGTCTGCGACT 51307 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589512952600360