Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04]
63,439 sequences; 2,073,344,508 total letters
Query= NC_015280.1
Length=181044
Score E
Sequences producing significant alignments: (Bits) Value
seq3704 174 2e-38
seq8309 132 6e-26
seq8508 125 8e-24
seq29832 111 2e-19
>seq3704
Length=2746
Score = 174 bits (192), Expect = 2e-38
Identities = 495/748 (66%), Gaps = 32/748 (4%)
Strand=Plus/Plus
Query 154395 AGATATATCTACGAGTTATGCTCTAAAGATTTCTCATTAGTAAATGGTATGGTTCCACTT 154454
|| || ||| || ||||| ||||| ||| ||||| | | | ||| |||||||
Sbjct 1846 AGGTACATCCACAAGTTACAGTCTAAGGATCTCTCACTGTGCCACAGCATGATTCCACTG 1905
Query 154455 GGCAGTTGCACAATGAAATTAAATGCAGCAGCAGAACTAATGCCTGTGTCATGGGAAGAG 154514
|| ||| || ||||| || |||||| || | ||| | ||||| || ||||| | ||
Sbjct 1906 GGATCTTGTACGATGAAGTTGAATGCAACAACTGAAATGATGCCAGTCACATGGCCA-AG 1964
Query 154515 TTTG-CTAACGTGCATCCACATACACCTATGATACAGACCATGGGTTATCAGAAAATTAT 154573
||| || || |||| ||| | | || | ||| | ||||||||| |||| |
Sbjct 1965 TTTCACTGACATGCACCCATTTGCTCCAGTTGAACAAGCACAAGGTTATCAGGAAATGTT 2024
Query 154574 AGATGACTTACAGAAATGGTTATGTGATATCACAGGGTTTGATTCTATATCATTACAACC 154633
| |||| | || ||| ||||| |||||||| ||| | ||||| |||||
Sbjct 2025 CAACAACTTGGGTGATCTCTTGTGTACAATCACCGGGTTTGACTCTTTCTCATTGCAACC 2084
Query 154634 TAACGCAGGATCACAGGGTGAGTATGCAGGACTGTTAGCAATCCAAGCATACCA----TC 154689
||| || || | ||||||||||| || || | | |||| ||||| || ||
Sbjct 2085 TAATGCTGGTGCTGCTGGTGAGTATGCCGGGCTTATGGTTATCCGCGCATATCACATGTC 2144
Query 154690 AAGGATCAGGAGATGATAAAAGAAATGTATGTTTGATACCAGAGTCAGCACATGGAACTA 154749
||| ||||||| || | |||||||| ||| | ||||| | || |||||||| || |
Sbjct 2145 AAG----AGGAGATCATCACAGAAATGTGTGTATCATACCTGTCTCTGCACATGGGACAA 2200
Query 154750 ATCCTGCTAGTGCTGTCATGGCAGGGATGAAAGTTGTA--GGTGTCAAGTGTGATGATGA 154807
| ||||| || |||| ||| || |||||| || | ||| || || ||| | |
Sbjct 2201 ACCCTGCAAGCGCTGCTATGTGCGGAATGAAAATTATTACGGTTGGAACTG--ATGCTAA 2258
Query 154808 TGGTAACATAGACATCAAAGATCT-AGAGAAGA-----AAGCAATCATGAATACATTTGA 154861
|| || || ||||| | || | ||| ||| |||| | || || ||| | |
Sbjct 2259 GGGAAATATCAACATCGAGGAGGTGAGAAAAGCTGCTGAAGCTAACA--AAGACAACTTA 2316
Query 154862 ACTGTCATGTATTATGATTACATACCCATCTACACATGGTGTATTTGAAACTAACATTAG 154921
| | | | ||| |||||||||| || || || || || | |||| ||| |
Sbjct 2317 GCCGCCCTC----ATGGTTACATACCCTTCAACTCACGGAGTCTATGAAGAAGGTATT-G 2371
Query 154922 AC-AGATATGTAAGATCGTTCATGACAATGGTGGTCAGGTATATCTTGATGGAGCAAATC 154980
|| |||| || || || | || || || || ||||| || ||| | ||||| || ||
Sbjct 2372 ACGAGATTTGCAACATAATACACGAAAACGGAGGTCAAGTGTATATGGATGGTGCCAACA 2431
Query 154981 TAAATGCACAGGTAGGACTAGCAAAACCATGTGAGTATGGTGCAGATGTATGTCATCTAA 155040
| ||||||||||| || | | | || || ||| || ||||| || ||||| |
Sbjct 2432 TGAATGCACAGGTTGGTTTGACGAGCCCCGGTTTCATTGGAGCGGATGTGTGCCATCTCA 2491
Query 155041 ACTTACATAAAACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATAG 155100
| | ||||| || ||||||||||| ||||||||||| || || || | ||||| || |
Sbjct 2492 ATCTCCATAAGACCTTCTGTATTCCTCATGGAGGTGGTGGGCCAGGAATGGGTCCCATCG 2551
Query 155101 GTGT--AGCAAAACATCTCACACCATTT 155126
|||| ||| ||||| | ||||||||
Sbjct 2552 GTGTGAAGC--AACATTTAGCACCATTT 2577
Score = 140 bits (154), Expect = 4e-28
Identities = 182/250 (73%), Gaps = 4/250 (2%)
Strand=Plus/Plus
Query 153768 CAAAGGTTTGGTATTCCTATGGGATATGGAGGTCCTCATGCTGCATTCTTTGCAACAACA 153827
|| ||||||||| |||| ||||| || || || || |||||||| ||||| || || ||
Sbjct 1192 CAGAGGTTTGGTGTTCCAATGGGTTACGGTGGCCCCCATGCTGCGTTCTTGGCTACTTCA 1251
Query 153828 GACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAGGT--CAGTCAGTAGATAGTGAAG 153885
| |||||||||||| ||| || || || ||| | ||| |||| || ||| | ||
Sbjct 1252 CAAGAGTATAAGAGAATGATGCCAGGGAGGATTATTGGTATCAGT--GTCGATTCTTCAG 1309
Query 153886 GTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGGAGAGACAAAG 153945
| || |||| | | || | ||||||||||| |||||||| ||||| |||||||
Sbjct 1310 GAAAGCAAGCTCTGCGTATGGCGATGCAGACTAGAGAACAGCATATTAGGAGGGACAAAG 1369
Query 153946 CAACCAGTAACATCTGCACAGCTCAGGCACTGCTGGCTAATATGTCTGGATTCTATGCAG 154005
| || || |||||||| || |||||||| |||| || || ||| ||| | ||||| |
Sbjct 1370 CCACTAGCAACATCTGTACTGCTCAGGCGTTGCTTGCCAACATGGCTGCCATGTATGCTG 1429
Query 154006 CATATCATGG 154015
|| |||||
Sbjct 1430 TTTACCATGG 1439
Score = 91.5 bits (100), Expect = 2e-13
Identities = 119/165 (72%), Gaps = 0/165 (0%)
Strand=Plus/Plus
Query 153264 GAGAATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCTGAGATATCTCAGGGAAGA 153323
|||||||| ||||||||| |||||||| || ||||||||||| |||||||| |
Sbjct 691 GAGAATCCGGCTTGGTACACTCAGTACACTCCTTACCAAGCTGAGATCTCTCAGGGTCGT 750
Query 153324 TTGGAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTTACAGGATTACCAATAGCA 153383
| || | | |||||| ||| ||| | ||||| || || || ||| | || || |
Sbjct 751 CTCGAGTCGCTCCTCAATTTCCAGACGGTGATCACCGATCTCACTGGACTTCCCATGTCT 810
Query 153384 AACGCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGCAATG 153428
|||||||| || |||| |||| || ||||| || || || |||
Sbjct 811 AACGCATCGCTGCTAGACGAAGGTACCGCAGCTGCGGAGGCTATG 855
>seq8309
Length=1165
Score = 132 bits (146), Expect = 6e-26
Identities = 225/324 (69%), Gaps = 4/324 (1%)
Strand=Plus/Minus
Query 153718 TGATGCAACCTGTAGGTGAGTGGGGATTTGATATTGCTGTAGGTAGTATGCAAAGGTTTG 153777
|| || ||||| || |||| || |||||||| ||| ||| ||||||||||
Sbjct 1138 TGTTGAAACCTCCTGGGGAGTTCGGTGCTGATATTGTTGTTGGTTCGGCTCAAAGGTTTG 1079
Query 153778 GTATTCCTATGGGATATGGAGGTCCTCATGCTGCATTCTTTGCAACAACAGACAAGTATA 153837
|| | || ||||| ||||| ||||| || ||||| || || || || || | ||||||
Sbjct 1078 GTGTACCGATGGGTTATGGTGGTCCACACGCTGCGTTTTTGGCTACTTCACAAGAGTATA 1019
Query 153838 AGAGAAAGATACCTGGCAGAATTGTAG--GTCAGTCAGTAGATAGTGAAGGTAATAAAGC 153895
|||| | ||| ||||| ||||| | | || ||| || ||| | ||| || ||||
Sbjct 1018 AGAGGATGATGCCTGGGAGAATCATTGGTGTTAGT--GTTGATTCTTCAGGGAAGCAAGC 961
Query 153896 ATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGGAGAGACAAAGCAACCAGTAA 153955
| | | || | |||||||| || || ||||| | || || ||||| ||||| ||
Sbjct 960 TTTGCGTATGGCTATGCAGACTAGGGAACAACATATTCGCAGGGATAAAGCTACCAGCAA 901
Query 153956 CATCTGCACAGCTCAGGCACTGCTGGCTAATATGTCTGGATTCTATGCAGCATATCATGG 154015
||| || || |||||||| |||| || || ||| ||| | | ||||| | || |||||
Sbjct 900 CATTTGTACTGCTCAGGCTTTGCTTGCAAACATGACTGCAATGTATGCTGTTTACCATGG 841
Query 154016 TGCAGATGGACTACATGCTATAGC 154039
|||| || || | ||||| ||
Sbjct 840 ACCAGAAGGCTTAAAAGCTATGGC 817
>seq8508
Length=1145
Score = 125 bits (138), Expect = 8e-24
Identities = 174/240 (73%), Gaps = 4/240 (2%)
Strand=Plus/Minus
Query 154873 TTATGATTACATACCCATCTACACATGGTGTATTTGAAACTAACATTAGAC-AGATATGT 154931
||||| ||||||| || || || ||||| || | |||| ||| ||| |||| ||
Sbjct 1088 TTATGGTTACATATCCTTCAACTCATGGAGTCTATGAAGAGGGTATT-GACGAGATCTGC 1030
Query 154932 AAGATCGTTCATGACAATGGTGGTCAGGTATATCTTGATGGAGCAAATCTAAATGCACAG 154991
|| || |||||| |||||| || || || ||| | ||||| || ||| | |||||||||
Sbjct 1029 AATATAATTCATGCCAATGGAGGCCAAGTTTATATGGATGGTGCTAATATGAATGCACAG 970
Query 154992 GTAGGACTAGCAAAACCATGTGAGTATGGTGCAGATGTATGTCATCTAAACTTACATAAA 155051
|| || || ||| || || ||| || ||||| || ||||| || | || ||
Sbjct 969 GTGGGTTTAACAAGTCCTGGTTTTATTGGAGCTGATGTTTGCCATCTCAATCTTCACAAG 910
Query 155052 ACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATAGGTGT--AGCAA 155109
|| |||||||| || ||||||||||| |||||||| | || ||||| ||||| |||||
Sbjct 909 ACCTTCTGTATCCCTCATGGAGGTGGTGGTCCTGGTATGGGCCCTATTGGTGTGAAGCAA 850
>seq29832
Length=347
Score = 111 bits (122), Expect = 2e-19
Identities = 109/141 (77%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 153288 TACACTCCCTATCAAGCTGAGATATCTCAGGGAAGATTGGAAGCTTTATTCAATTACCAA 153347
|||||||| |||||||||||||| || || |||||| | || || || |||||| ||||
Sbjct 6 TACACTCCTTATCAAGCTGAGATCTCACAAGGAAGACTCGAGTCTCTACTCAATTTCCAA 65
Query 153348 ACGCTCATCACAGAACTTACAGGATTACCAATAGCAAACGCATCTCTATTAGATGAAGCA 153407
||| | ||||| || || || || | || || ||||||| ||| | | |||||||
Sbjct 66 ACGGTGATCACTGATCTCACTGGTCTCCCCATGTCAAACGCTTCTTTGCTCGATGAAGGT 125
Query 153408 ACTGCAGCAGCAGAAGCAATG 153428
|| |||||||||||||| |||
Sbjct 126 ACAGCAGCAGCAGAAGCCATG 146
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 578753491489760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |