Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04] 63,439 sequences; 2,073,344,508 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq3704 174 2e-38 seq8309 132 6e-26 seq8508 125 8e-24 seq29832 111 2e-19 >seq3704 Length=2746 Score = 174 bits (192), Expect = 2e-38 Identities = 495/748 (66%), Gaps = 32/748 (4%) Strand=Plus/Plus Query 154395 AGATATATCTACGAGTTATGCTCTAAAGATTTCTCATTAGTAAATGGTATGGTTCCACTT 154454 || || ||| || ||||| ||||| ||| ||||| | | | ||| ||||||| Sbjct 1846 AGGTACATCCACAAGTTACAGTCTAAGGATCTCTCACTGTGCCACAGCATGATTCCACTG 1905 Query 154455 GGCAGTTGCACAATGAAATTAAATGCAGCAGCAGAACTAATGCCTGTGTCATGGGAAGAG 154514 || ||| || ||||| || |||||| || | ||| | ||||| || ||||| | || Sbjct 1906 GGATCTTGTACGATGAAGTTGAATGCAACAACTGAAATGATGCCAGTCACATGGCCA-AG 1964 Query 154515 TTTG-CTAACGTGCATCCACATACACCTATGATACAGACCATGGGTTATCAGAAAATTAT 154573 ||| || || |||| ||| | | || | ||| | ||||||||| |||| | Sbjct 1965 TTTCACTGACATGCACCCATTTGCTCCAGTTGAACAAGCACAAGGTTATCAGGAAATGTT 2024 Query 154574 AGATGACTTACAGAAATGGTTATGTGATATCACAGGGTTTGATTCTATATCATTACAACC 154633 | |||| | || ||| ||||| |||||||| ||| | ||||| ||||| Sbjct 2025 CAACAACTTGGGTGATCTCTTGTGTACAATCACCGGGTTTGACTCTTTCTCATTGCAACC 2084 Query 154634 TAACGCAGGATCACAGGGTGAGTATGCAGGACTGTTAGCAATCCAAGCATACCA----TC 154689 ||| || || | ||||||||||| || || | | |||| ||||| || || Sbjct 2085 TAATGCTGGTGCTGCTGGTGAGTATGCCGGGCTTATGGTTATCCGCGCATATCACATGTC 2144 Query 154690 AAGGATCAGGAGATGATAAAAGAAATGTATGTTTGATACCAGAGTCAGCACATGGAACTA 154749 ||| ||||||| || | |||||||| ||| | ||||| | || |||||||| || | Sbjct 2145 AAG----AGGAGATCATCACAGAAATGTGTGTATCATACCTGTCTCTGCACATGGGACAA 2200 Query 154750 ATCCTGCTAGTGCTGTCATGGCAGGGATGAAAGTTGTA--GGTGTCAAGTGTGATGATGA 154807 | ||||| || |||| ||| || |||||| || | ||| || || ||| | | Sbjct 2201 ACCCTGCAAGCGCTGCTATGTGCGGAATGAAAATTATTACGGTTGGAACTG--ATGCTAA 2258 Query 154808 TGGTAACATAGACATCAAAGATCT-AGAGAAGA-----AAGCAATCATGAATACATTTGA 154861 || || || ||||| | || | ||| ||| |||| | || || ||| | | Sbjct 2259 GGGAAATATCAACATCGAGGAGGTGAGAAAAGCTGCTGAAGCTAACA--AAGACAACTTA 2316 Query 154862 ACTGTCATGTATTATGATTACATACCCATCTACACATGGTGTATTTGAAACTAACATTAG 154921 | | | | ||| |||||||||| || || || || || | |||| ||| | Sbjct 2317 GCCGCCCTC----ATGGTTACATACCCTTCAACTCACGGAGTCTATGAAGAAGGTATT-G 2371 Query 154922 AC-AGATATGTAAGATCGTTCATGACAATGGTGGTCAGGTATATCTTGATGGAGCAAATC 154980 || |||| || || || | || || || || ||||| || ||| | ||||| || || Sbjct 2372 ACGAGATTTGCAACATAATACACGAAAACGGAGGTCAAGTGTATATGGATGGTGCCAACA 2431 Query 154981 TAAATGCACAGGTAGGACTAGCAAAACCATGTGAGTATGGTGCAGATGTATGTCATCTAA 155040 | ||||||||||| || | | | || || ||| || ||||| || ||||| | Sbjct 2432 TGAATGCACAGGTTGGTTTGACGAGCCCCGGTTTCATTGGAGCGGATGTGTGCCATCTCA 2491 Query 155041 ACTTACATAAAACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATAG 155100 | | ||||| || ||||||||||| ||||||||||| || || || | ||||| || | Sbjct 2492 ATCTCCATAAGACCTTCTGTATTCCTCATGGAGGTGGTGGGCCAGGAATGGGTCCCATCG 2551 Query 155101 GTGT--AGCAAAACATCTCACACCATTT 155126 |||| ||| ||||| | |||||||| Sbjct 2552 GTGTGAAGC--AACATTTAGCACCATTT 2577 Score = 140 bits (154), Expect = 4e-28 Identities = 182/250 (73%), Gaps = 4/250 (2%) Strand=Plus/Plus Query 153768 CAAAGGTTTGGTATTCCTATGGGATATGGAGGTCCTCATGCTGCATTCTTTGCAACAACA 153827 || ||||||||| |||| ||||| || || || || |||||||| ||||| || || || Sbjct 1192 CAGAGGTTTGGTGTTCCAATGGGTTACGGTGGCCCCCATGCTGCGTTCTTGGCTACTTCA 1251 Query 153828 GACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAGGT--CAGTCAGTAGATAGTGAAG 153885 | |||||||||||| ||| || || || ||| | ||| |||| || ||| | || Sbjct 1252 CAAGAGTATAAGAGAATGATGCCAGGGAGGATTATTGGTATCAGT--GTCGATTCTTCAG 1309 Query 153886 GTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGGAGAGACAAAG 153945 | || |||| | | || | ||||||||||| |||||||| ||||| ||||||| Sbjct 1310 GAAAGCAAGCTCTGCGTATGGCGATGCAGACTAGAGAACAGCATATTAGGAGGGACAAAG 1369 Query 153946 CAACCAGTAACATCTGCACAGCTCAGGCACTGCTGGCTAATATGTCTGGATTCTATGCAG 154005 | || || |||||||| || |||||||| |||| || || ||| ||| | ||||| | Sbjct 1370 CCACTAGCAACATCTGTACTGCTCAGGCGTTGCTTGCCAACATGGCTGCCATGTATGCTG 1429 Query 154006 CATATCATGG 154015 || ||||| Sbjct 1430 TTTACCATGG 1439 Score = 91.5 bits (100), Expect = 2e-13 Identities = 119/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 153264 GAGAATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCTGAGATATCTCAGGGAAGA 153323 |||||||| ||||||||| |||||||| || ||||||||||| |||||||| | Sbjct 691 GAGAATCCGGCTTGGTACACTCAGTACACTCCTTACCAAGCTGAGATCTCTCAGGGTCGT 750 Query 153324 TTGGAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTTACAGGATTACCAATAGCA 153383 | || | | |||||| ||| ||| | ||||| || || || ||| | || || | Sbjct 751 CTCGAGTCGCTCCTCAATTTCCAGACGGTGATCACCGATCTCACTGGACTTCCCATGTCT 810 Query 153384 AACGCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGCAATG 153428 |||||||| || |||| |||| || ||||| || || || ||| Sbjct 811 AACGCATCGCTGCTAGACGAAGGTACCGCAGCTGCGGAGGCTATG 855 >seq8309 Length=1165 Score = 132 bits (146), Expect = 6e-26 Identities = 225/324 (69%), Gaps = 4/324 (1%) Strand=Plus/Minus Query 153718 TGATGCAACCTGTAGGTGAGTGGGGATTTGATATTGCTGTAGGTAGTATGCAAAGGTTTG 153777 || || ||||| || |||| || |||||||| ||| ||| |||||||||| Sbjct 1138 TGTTGAAACCTCCTGGGGAGTTCGGTGCTGATATTGTTGTTGGTTCGGCTCAAAGGTTTG 1079 Query 153778 GTATTCCTATGGGATATGGAGGTCCTCATGCTGCATTCTTTGCAACAACAGACAAGTATA 153837 || | || ||||| ||||| ||||| || ||||| || || || || || | |||||| Sbjct 1078 GTGTACCGATGGGTTATGGTGGTCCACACGCTGCGTTTTTGGCTACTTCACAAGAGTATA 1019 Query 153838 AGAGAAAGATACCTGGCAGAATTGTAG--GTCAGTCAGTAGATAGTGAAGGTAATAAAGC 153895 |||| | ||| ||||| ||||| | | || ||| || ||| | ||| || |||| Sbjct 1018 AGAGGATGATGCCTGGGAGAATCATTGGTGTTAGT--GTTGATTCTTCAGGGAAGCAAGC 961 Query 153896 ATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGGAGAGACAAAGCAACCAGTAA 153955 | | | || | |||||||| || || ||||| | || || ||||| ||||| || Sbjct 960 TTTGCGTATGGCTATGCAGACTAGGGAACAACATATTCGCAGGGATAAAGCTACCAGCAA 901 Query 153956 CATCTGCACAGCTCAGGCACTGCTGGCTAATATGTCTGGATTCTATGCAGCATATCATGG 154015 ||| || || |||||||| |||| || || ||| ||| | | ||||| | || ||||| Sbjct 900 CATTTGTACTGCTCAGGCTTTGCTTGCAAACATGACTGCAATGTATGCTGTTTACCATGG 841 Query 154016 TGCAGATGGACTACATGCTATAGC 154039 |||| || || | ||||| || Sbjct 840 ACCAGAAGGCTTAAAAGCTATGGC 817 >seq8508 Length=1145 Score = 125 bits (138), Expect = 8e-24 Identities = 174/240 (73%), Gaps = 4/240 (2%) Strand=Plus/Minus Query 154873 TTATGATTACATACCCATCTACACATGGTGTATTTGAAACTAACATTAGAC-AGATATGT 154931 ||||| ||||||| || || || ||||| || | |||| ||| ||| |||| || Sbjct 1088 TTATGGTTACATATCCTTCAACTCATGGAGTCTATGAAGAGGGTATT-GACGAGATCTGC 1030 Query 154932 AAGATCGTTCATGACAATGGTGGTCAGGTATATCTTGATGGAGCAAATCTAAATGCACAG 154991 || || |||||| |||||| || || || ||| | ||||| || ||| | ||||||||| Sbjct 1029 AATATAATTCATGCCAATGGAGGCCAAGTTTATATGGATGGTGCTAATATGAATGCACAG 970 Query 154992 GTAGGACTAGCAAAACCATGTGAGTATGGTGCAGATGTATGTCATCTAAACTTACATAAA 155051 || || || ||| || || ||| || ||||| || ||||| || | || || Sbjct 969 GTGGGTTTAACAAGTCCTGGTTTTATTGGAGCTGATGTTTGCCATCTCAATCTTCACAAG 910 Query 155052 ACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATAGGTGT--AGCAA 155109 || |||||||| || ||||||||||| |||||||| | || ||||| ||||| ||||| Sbjct 909 ACCTTCTGTATCCCTCATGGAGGTGGTGGTCCTGGTATGGGCCCTATTGGTGTGAAGCAA 850 >seq29832 Length=347 Score = 111 bits (122), Expect = 2e-19 Identities = 109/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 153288 TACACTCCCTATCAAGCTGAGATATCTCAGGGAAGATTGGAAGCTTTATTCAATTACCAA 153347 |||||||| |||||||||||||| || || |||||| | || || || |||||| |||| Sbjct 6 TACACTCCTTATCAAGCTGAGATCTCACAAGGAAGACTCGAGTCTCTACTCAATTTCCAA 65 Query 153348 ACGCTCATCACAGAACTTACAGGATTACCAATAGCAAACGCATCTCTATTAGATGAAGCA 153407 ||| | ||||| || || || || | || || ||||||| ||| | | ||||||| Sbjct 66 ACGGTGATCACTGATCTCACTGGTCTCCCCATGTCAAACGCTTCTTTGCTCGATGAAGGT 125 Query 153408 ACTGCAGCAGCAGAAGCAATG 153428 || |||||||||||||| ||| Sbjct 126 ACAGCAGCAGCAGAAGCCATG 146 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578753491489760