Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04] 63,439 sequences; 2,073,344,508 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq3704 168 8e-37 seq8508 140 4e-28 seq29832 120 4e-22 seq8309 105 8e-18 >seq3704 Length=2746 Score = 168 bits (186), Expect = 8e-37 Identities = 465/700 (66%), Gaps = 32/700 (5%) Strand=Plus/Plus Query 159118 ATGGTTCCACTTGGTAGTTGTACTATGAAACTAAACGCAGCATCAGAACTGATGCCTGTG 159177 ||| ||||||| || |||||| ||||| | || ||| || | ||| ||||||| || Sbjct 1894 ATGATTCCACTGGGATCTTGTACGATGAAGTTGAATGCAACAACTGAAATGATGCCAGTC 1953 Query 159178 TCATGGGAAGAGTTTG-CTAACGTGCATCCACATACACCTATGATACAGACCATGGGTTA 159236 ||||| | ||||| || || |||| ||| | | || | ||| | ||||| Sbjct 1954 ACATGGCCA-AGTTTCACTGACATGCACCCATTTGCTCCAGTTGAACAAGCACAAGGTTA 2012 Query 159237 TCAAAAAATTATAGATGACTTACAGAAATGGTTATGTGATATCACAGGGTTTGATTCTAT 159296 ||| |||| | | |||| | || ||| ||||| |||||||| ||| | Sbjct 2013 TCAGGAAATGTTCAACAACTTGGGTGATCTCTTGTGTACAATCACCGGGTTTGACTCTTT 2072 Query 159297 ATCATTACAACCTAACGCAGGATCACAGGGTGAGTATGCAGGACTGTTAGCAATCCAAGC 159356 ||||| |||||||| || || | ||||||||||| || || | | |||| || Sbjct 2073 CTCATTGCAACCTAATGCTGGTGCTGCTGGTGAGTATGCCGGGCTTATGGTTATCCGCGC 2132 Query 159357 ATACCA----TCAAGGATCAGGAGATGATAAAAGAAATGTATGTTTGATACCAGAGTCAG 159412 ||| || ||||| ||||||| || | |||||||| ||| | ||||| | || | Sbjct 2133 ATATCACATGTCAAG----AGGAGATCATCACAGAAATGTGTGTATCATACCTGTCTCTG 2188 Query 159413 CACATGGAACTAATCCTGCATCAGCAGTGATGGCAGGGATGAAAGTTGTA--GGTGTCAA 159470 ||||||| || || |||||| || | ||| || |||||| || | ||| || Sbjct 2189 CACATGGGACAAACCCTGCAAGCGCTGCTATGTGCGGAATGAAAATTATTACGGTTGGAA 2248 Query 159471 GTGTGATGATGATGGCAACATAGACATCAAAGATCT-AGAGAAGA-----AAGCAATCAT 159524 || ||| | | || || || ||||| | || | ||| ||| |||| | || Sbjct 2249 CTG--ATGCTAAGGGAAATATCAACATCGAGGAGGTGAGAAAAGCTGCTGAAGCTAACA- 2305 Query 159525 GAATACATTTGAACTGTCATGTATTATGATTACATATCCATCTACACATGGTGTATTTGA 159584 || ||| | | | | | | ||| ||||||| || || || || || || | ||| Sbjct 2306 -AAGACAACTTAGCCGCCCTC----ATGGTTACATACCCTTCAACTCACGGAGTCTATGA 2360 Query 159585 AACAAACATCAGAC-AGATATGTAAGATTGTTCATGAGAATGGTGGTCAGGTATATCTTG 159643 | | || ||| |||| || || || | || || || || ||||| || ||| | | Sbjct 2361 AGAAGGTATT-GACGAGATTTGCAACATAATACACGAAAACGGAGGTCAAGTGTATATGG 2419 Query 159644 ATGGTGCAAATCTAAATGCACAGGTAGGTCTAGCAAAACCATGTGACTATGGTGCAGATG 159703 ||||||| || | ||||||||||| ||| | | | || || | ||| || |||| Sbjct 2420 ATGGTGCCAACATGAATGCACAGGTTGGTTTGACGAGCCCCGGTTTCATTGGAGCGGATG 2479 Query 159704 TATGTCATCTAAACTTACATAAGACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCG 159763 | || ||||| || | |||||||| ||||||||||| ||||||||||| || || || Sbjct 2480 TGTGCCATCTCAATCTCCATAAGACCTTCTGTATTCCTCATGGAGGTGGTGGGCCAGGAA 2539 Query 159764 TAGGTCCTATTGGTGT--AGCAAAACATCTCACACCATTT 159801 | ||||| || ||||| ||| ||||| | |||||||| Sbjct 2540 TGGGTCCCATCGGTGTGAAGC--AACATTTAGCACCATTT 2577 Score = 125 bits (138), Expect = 8e-24 Identities = 179/250 (72%), Gaps = 4/250 (2%) Strand=Plus/Plus Query 158443 CAAAGGTTTGGTATTCCTATGGGATACGGAGGTCCTCATGCTGCATTCTTTGCAACAACA 158502 || ||||||||| |||| ||||| ||||| || || |||||||| ||||| || || || Sbjct 1192 CAGAGGTTTGGTGTTCCAATGGGTTACGGTGGCCCCCATGCTGCGTTCTTGGCTACTTCA 1251 Query 158503 GACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAGG--TCAGTCAGTAGATAGCGAAG 158560 | |||||||||||| ||| || || || ||| | || ||||| || ||| || Sbjct 1252 CAAGAGTATAAGAGAATGATGCCAGGGAGGATTATTGGTATCAGT--GTCGATTCTTCAG 1309 Query 158561 GTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGAAGAGACAAAG 158620 | || |||| | | || | ||||||||||| |||||||| || || ||||||| Sbjct 1310 GAAAGCAAGCTCTGCGTATGGCGATGCAGACTAGAGAACAGCATATTAGGAGGGACAAAG 1369 Query 158621 CAACCAGTAACATCTGCACAGCACAAGCACTGCTGGCTAATATGTCTGGGTTCTATGCAG 158680 | || || |||||||| || || || || |||| || || ||| ||| | ||||| | Sbjct 1370 CCACTAGCAACATCTGTACTGCTCAGGCGTTGCTTGCCAACATGGCTGCCATGTATGCTG 1429 Query 158681 CATATCATGG 158690 || ||||| Sbjct 1430 TTTACCATGG 1439 Score = 104 bits (114), Expect = 3e-17 Identities = 153/215 (71%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 157891 GGATACTATGGAACCATCACACCCCCA--GTCATACAGCGAAACGTTCTTGAGAATCCTA 157948 |||||||| ||| |||| ||||| || || | || ||| | | |||||||| Sbjct 643 GGATACTAC--AACACTCACGTCCCCACTGTGATTCTCCGGAACATCATGGAGAATCCGG 700 Query 157949 GTTGGTACACATCTTACACTCCCTATCAAGCTGAGATATCTCAGGGAAGATTGGAAGCTT 158008 ||||||||| |||||||| || ||||||||||| |||||||| | | || | Sbjct 701 CTTGGTACACTCAGTACACTCCTTACCAAGCTGAGATCTCTCAGGGTCGTCTCGAGTCGC 760 Query 158009 TATTCAATTACCAAACGCTCATCACAGAACTCACAGGACTACCGATAGCAAACGCATCTC 158068 | |||||| ||| ||| | ||||| || ||||| ||||| || || | |||||||| | Sbjct 761 TCCTCAATTTCCAGACGGTGATCACCGATCTCACTGGACTTCCCATGTCTAACGCATCGC 820 Query 158069 TATTAGATGAAGCAACTGCAGCAGCAGAAGCAATG 158103 | |||| |||| || ||||| || || || ||| Sbjct 821 TGCTAGACGAAGGTACCGCAGCTGCGGAGGCTATG 855 >seq8508 Length=1145 Score = 140 bits (154), Expect = 4e-28 Identities = 177/240 (74%), Gaps = 4/240 (2%) Strand=Plus/Minus Query 159548 TTATGATTACATATCCATCTACACATGGTGTATTTGAAACAAACATCAGAC-AGATATGT 159606 ||||| |||||||||| || || ||||| || | |||| || ||| |||| || Sbjct 1088 TTATGGTTACATATCCTTCAACTCATGGAGTCTATGAAGAGGGTATT-GACGAGATCTGC 1030 Query 159607 AAGATTGTTCATGAGAATGGTGGTCAGGTATATCTTGATGGTGCAAATCTAAATGCACAG 159666 || || |||||| ||||| || || || ||| | |||||||| ||| | ||||||||| Sbjct 1029 AATATAATTCATGCCAATGGAGGCCAAGTTTATATGGATGGTGCTAATATGAATGCACAG 970 Query 159667 GTAGGTCTAGCAAAACCATGTGACTATGGTGCAGATGTATGTCATCTAAACTTACATAAG 159726 || ||| || ||| || || ||| || ||||| || ||||| || | || ||| Sbjct 969 GTGGGTTTAACAAGTCCTGGTTTTATTGGAGCTGATGTTTGCCATCTCAATCTTCACAAG 910 Query 159727 ACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATTGGTGT--AGCAA 159784 || |||||||| || ||||||||||| |||||||| | || ||||||||||| ||||| Sbjct 909 ACCTTCTGTATCCCTCATGGAGGTGGTGGTCCTGGTATGGGCCCTATTGGTGTGAAGCAA 850 >seq29832 Length=347 Score = 120 bits (132), Expect = 4e-22 Identities = 111/141 (79%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 157963 TACACTCCCTATCAAGCTGAGATATCTCAGGGAAGATTGGAAGCTTTATTCAATTACCAA 158022 |||||||| |||||||||||||| || || |||||| | || || || |||||| |||| Sbjct 6 TACACTCCTTATCAAGCTGAGATCTCACAAGGAAGACTCGAGTCTCTACTCAATTTCCAA 65 Query 158023 ACGCTCATCACAGAACTCACAGGACTACCGATAGCAAACGCATCTCTATTAGATGAAGCA 158082 ||| | ||||| || ||||| || || || || ||||||| ||| | | ||||||| Sbjct 66 ACGGTGATCACTGATCTCACTGGTCTCCCCATGTCAAACGCTTCTTTGCTCGATGAAGGT 125 Query 158083 ACTGCAGCAGCAGAAGCAATG 158103 || |||||||||||||| ||| Sbjct 126 ACAGCAGCAGCAGAAGCCATG 146 >seq8309 Length=1165 Score = 105 bits (116), Expect = 8e-18 Identities = 189/274 (69%), Gaps = 4/274 (1%) Strand=Plus/Minus Query 158443 CAAAGGTTTGGTATTCCTATGGGATACGGAGGTCCTCATGCTGCATTCTTTGCAACAACA 158502 |||||||||||| | || ||||| || || ||||| || ||||| || || || || || Sbjct 1088 CAAAGGTTTGGTGTACCGATGGGTTATGGTGGTCCACACGCTGCGTTTTTGGCTACTTCA 1029 Query 158503 GACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAG--GTCAGTCAGTAGATAGCGAAG 158560 | |||||||||| | ||| ||||| ||||| | | || ||| || ||| || Sbjct 1028 CAAGAGTATAAGAGGATGATGCCTGGGAGAATCATTGGTGTTAGT--GTTGATTCTTCAG 971 Query 158561 GTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGAAGAGACAAAG 158620 | || |||| | | | || | |||||||| || || ||||| | || || |||| Sbjct 970 GGAAGCAAGCTTTGCGTATGGCTATGCAGACTAGGGAACAACATATTCGCAGGGATAAAG 911 Query 158621 CAACCAGTAACATCTGCACAGCACAAGCACTGCTGGCTAATATGTCTGGGTTCTATGCAG 158680 | ||||| ||||| || || || || || |||| || || ||| ||| | ||||| | Sbjct 910 CTACCAGCAACATTTGTACTGCTCAGGCTTTGCTTGCAAACATGACTGCAATGTATGCTG 851 Query 158681 CATATCATGGTGCAGATGGACTACATGCTATAGC 158714 || ||||| |||| || || | ||||| || Sbjct 850 TTTACCATGGACCAGAAGGCTTAAAAGCTATGGC 817 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 587584882749040