Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04]
63,439 sequences; 2,073,344,508 total letters
Query= NC_015284.1
Length=183806
Score E
Sequences producing significant alignments: (Bits) Value
seq3704 168 8e-37
seq8508 140 4e-28
seq29832 120 4e-22
seq8309 105 8e-18
>seq3704
Length=2746
Score = 168 bits (186), Expect = 8e-37
Identities = 465/700 (66%), Gaps = 32/700 (5%)
Strand=Plus/Plus
Query 159118 ATGGTTCCACTTGGTAGTTGTACTATGAAACTAAACGCAGCATCAGAACTGATGCCTGTG 159177
||| ||||||| || |||||| ||||| | || ||| || | ||| ||||||| ||
Sbjct 1894 ATGATTCCACTGGGATCTTGTACGATGAAGTTGAATGCAACAACTGAAATGATGCCAGTC 1953
Query 159178 TCATGGGAAGAGTTTG-CTAACGTGCATCCACATACACCTATGATACAGACCATGGGTTA 159236
||||| | ||||| || || |||| ||| | | || | ||| | |||||
Sbjct 1954 ACATGGCCA-AGTTTCACTGACATGCACCCATTTGCTCCAGTTGAACAAGCACAAGGTTA 2012
Query 159237 TCAAAAAATTATAGATGACTTACAGAAATGGTTATGTGATATCACAGGGTTTGATTCTAT 159296
||| |||| | | |||| | || ||| ||||| |||||||| ||| |
Sbjct 2013 TCAGGAAATGTTCAACAACTTGGGTGATCTCTTGTGTACAATCACCGGGTTTGACTCTTT 2072
Query 159297 ATCATTACAACCTAACGCAGGATCACAGGGTGAGTATGCAGGACTGTTAGCAATCCAAGC 159356
||||| |||||||| || || | ||||||||||| || || | | |||| ||
Sbjct 2073 CTCATTGCAACCTAATGCTGGTGCTGCTGGTGAGTATGCCGGGCTTATGGTTATCCGCGC 2132
Query 159357 ATACCA----TCAAGGATCAGGAGATGATAAAAGAAATGTATGTTTGATACCAGAGTCAG 159412
||| || ||||| ||||||| || | |||||||| ||| | ||||| | || |
Sbjct 2133 ATATCACATGTCAAG----AGGAGATCATCACAGAAATGTGTGTATCATACCTGTCTCTG 2188
Query 159413 CACATGGAACTAATCCTGCATCAGCAGTGATGGCAGGGATGAAAGTTGTA--GGTGTCAA 159470
||||||| || || |||||| || | ||| || |||||| || | ||| ||
Sbjct 2189 CACATGGGACAAACCCTGCAAGCGCTGCTATGTGCGGAATGAAAATTATTACGGTTGGAA 2248
Query 159471 GTGTGATGATGATGGCAACATAGACATCAAAGATCT-AGAGAAGA-----AAGCAATCAT 159524
|| ||| | | || || || ||||| | || | ||| ||| |||| | ||
Sbjct 2249 CTG--ATGCTAAGGGAAATATCAACATCGAGGAGGTGAGAAAAGCTGCTGAAGCTAACA- 2305
Query 159525 GAATACATTTGAACTGTCATGTATTATGATTACATATCCATCTACACATGGTGTATTTGA 159584
|| ||| | | | | | | ||| ||||||| || || || || || || | |||
Sbjct 2306 -AAGACAACTTAGCCGCCCTC----ATGGTTACATACCCTTCAACTCACGGAGTCTATGA 2360
Query 159585 AACAAACATCAGAC-AGATATGTAAGATTGTTCATGAGAATGGTGGTCAGGTATATCTTG 159643
| | || ||| |||| || || || | || || || || ||||| || ||| | |
Sbjct 2361 AGAAGGTATT-GACGAGATTTGCAACATAATACACGAAAACGGAGGTCAAGTGTATATGG 2419
Query 159644 ATGGTGCAAATCTAAATGCACAGGTAGGTCTAGCAAAACCATGTGACTATGGTGCAGATG 159703
||||||| || | ||||||||||| ||| | | | || || | ||| || ||||
Sbjct 2420 ATGGTGCCAACATGAATGCACAGGTTGGTTTGACGAGCCCCGGTTTCATTGGAGCGGATG 2479
Query 159704 TATGTCATCTAAACTTACATAAGACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCG 159763
| || ||||| || | |||||||| ||||||||||| ||||||||||| || || ||
Sbjct 2480 TGTGCCATCTCAATCTCCATAAGACCTTCTGTATTCCTCATGGAGGTGGTGGGCCAGGAA 2539
Query 159764 TAGGTCCTATTGGTGT--AGCAAAACATCTCACACCATTT 159801
| ||||| || ||||| ||| ||||| | ||||||||
Sbjct 2540 TGGGTCCCATCGGTGTGAAGC--AACATTTAGCACCATTT 2577
Score = 125 bits (138), Expect = 8e-24
Identities = 179/250 (72%), Gaps = 4/250 (2%)
Strand=Plus/Plus
Query 158443 CAAAGGTTTGGTATTCCTATGGGATACGGAGGTCCTCATGCTGCATTCTTTGCAACAACA 158502
|| ||||||||| |||| ||||| ||||| || || |||||||| ||||| || || ||
Sbjct 1192 CAGAGGTTTGGTGTTCCAATGGGTTACGGTGGCCCCCATGCTGCGTTCTTGGCTACTTCA 1251
Query 158503 GACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAGG--TCAGTCAGTAGATAGCGAAG 158560
| |||||||||||| ||| || || || ||| | || ||||| || ||| ||
Sbjct 1252 CAAGAGTATAAGAGAATGATGCCAGGGAGGATTATTGGTATCAGT--GTCGATTCTTCAG 1309
Query 158561 GTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGAAGAGACAAAG 158620
| || |||| | | || | ||||||||||| |||||||| || || |||||||
Sbjct 1310 GAAAGCAAGCTCTGCGTATGGCGATGCAGACTAGAGAACAGCATATTAGGAGGGACAAAG 1369
Query 158621 CAACCAGTAACATCTGCACAGCACAAGCACTGCTGGCTAATATGTCTGGGTTCTATGCAG 158680
| || || |||||||| || || || || |||| || || ||| ||| | ||||| |
Sbjct 1370 CCACTAGCAACATCTGTACTGCTCAGGCGTTGCTTGCCAACATGGCTGCCATGTATGCTG 1429
Query 158681 CATATCATGG 158690
|| |||||
Sbjct 1430 TTTACCATGG 1439
Score = 104 bits (114), Expect = 3e-17
Identities = 153/215 (71%), Gaps = 4/215 (2%)
Strand=Plus/Plus
Query 157891 GGATACTATGGAACCATCACACCCCCA--GTCATACAGCGAAACGTTCTTGAGAATCCTA 157948
|||||||| ||| |||| ||||| || || | || ||| | | ||||||||
Sbjct 643 GGATACTAC--AACACTCACGTCCCCACTGTGATTCTCCGGAACATCATGGAGAATCCGG 700
Query 157949 GTTGGTACACATCTTACACTCCCTATCAAGCTGAGATATCTCAGGGAAGATTGGAAGCTT 158008
||||||||| |||||||| || ||||||||||| |||||||| | | || |
Sbjct 701 CTTGGTACACTCAGTACACTCCTTACCAAGCTGAGATCTCTCAGGGTCGTCTCGAGTCGC 760
Query 158009 TATTCAATTACCAAACGCTCATCACAGAACTCACAGGACTACCGATAGCAAACGCATCTC 158068
| |||||| ||| ||| | ||||| || ||||| ||||| || || | |||||||| |
Sbjct 761 TCCTCAATTTCCAGACGGTGATCACCGATCTCACTGGACTTCCCATGTCTAACGCATCGC 820
Query 158069 TATTAGATGAAGCAACTGCAGCAGCAGAAGCAATG 158103
| |||| |||| || ||||| || || || |||
Sbjct 821 TGCTAGACGAAGGTACCGCAGCTGCGGAGGCTATG 855
>seq8508
Length=1145
Score = 140 bits (154), Expect = 4e-28
Identities = 177/240 (74%), Gaps = 4/240 (2%)
Strand=Plus/Minus
Query 159548 TTATGATTACATATCCATCTACACATGGTGTATTTGAAACAAACATCAGAC-AGATATGT 159606
||||| |||||||||| || || ||||| || | |||| || ||| |||| ||
Sbjct 1088 TTATGGTTACATATCCTTCAACTCATGGAGTCTATGAAGAGGGTATT-GACGAGATCTGC 1030
Query 159607 AAGATTGTTCATGAGAATGGTGGTCAGGTATATCTTGATGGTGCAAATCTAAATGCACAG 159666
|| || |||||| ||||| || || || ||| | |||||||| ||| | |||||||||
Sbjct 1029 AATATAATTCATGCCAATGGAGGCCAAGTTTATATGGATGGTGCTAATATGAATGCACAG 970
Query 159667 GTAGGTCTAGCAAAACCATGTGACTATGGTGCAGATGTATGTCATCTAAACTTACATAAG 159726
|| ||| || ||| || || ||| || ||||| || ||||| || | || |||
Sbjct 969 GTGGGTTTAACAAGTCCTGGTTTTATTGGAGCTGATGTTTGCCATCTCAATCTTCACAAG 910
Query 159727 ACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATTGGTGT--AGCAA 159784
|| |||||||| || ||||||||||| |||||||| | || ||||||||||| |||||
Sbjct 909 ACCTTCTGTATCCCTCATGGAGGTGGTGGTCCTGGTATGGGCCCTATTGGTGTGAAGCAA 850
>seq29832
Length=347
Score = 120 bits (132), Expect = 4e-22
Identities = 111/141 (79%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 157963 TACACTCCCTATCAAGCTGAGATATCTCAGGGAAGATTGGAAGCTTTATTCAATTACCAA 158022
|||||||| |||||||||||||| || || |||||| | || || || |||||| ||||
Sbjct 6 TACACTCCTTATCAAGCTGAGATCTCACAAGGAAGACTCGAGTCTCTACTCAATTTCCAA 65
Query 158023 ACGCTCATCACAGAACTCACAGGACTACCGATAGCAAACGCATCTCTATTAGATGAAGCA 158082
||| | ||||| || ||||| || || || || ||||||| ||| | | |||||||
Sbjct 66 ACGGTGATCACTGATCTCACTGGTCTCCCCATGTCAAACGCTTCTTTGCTCGATGAAGGT 125
Query 158083 ACTGCAGCAGCAGAAGCAATG 158103
|| |||||||||||||| |||
Sbjct 126 ACAGCAGCAGCAGAAGCCATG 146
>seq8309
Length=1165
Score = 105 bits (116), Expect = 8e-18
Identities = 189/274 (69%), Gaps = 4/274 (1%)
Strand=Plus/Minus
Query 158443 CAAAGGTTTGGTATTCCTATGGGATACGGAGGTCCTCATGCTGCATTCTTTGCAACAACA 158502
|||||||||||| | || ||||| || || ||||| || ||||| || || || || ||
Sbjct 1088 CAAAGGTTTGGTGTACCGATGGGTTATGGTGGTCCACACGCTGCGTTTTTGGCTACTTCA 1029
Query 158503 GACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAG--GTCAGTCAGTAGATAGCGAAG 158560
| |||||||||| | ||| ||||| ||||| | | || ||| || ||| ||
Sbjct 1028 CAAGAGTATAAGAGGATGATGCCTGGGAGAATCATTGGTGTTAGT--GTTGATTCTTCAG 971
Query 158561 GTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGAAGAGACAAAG 158620
| || |||| | | | || | |||||||| || || ||||| | || || ||||
Sbjct 970 GGAAGCAAGCTTTGCGTATGGCTATGCAGACTAGGGAACAACATATTCGCAGGGATAAAG 911
Query 158621 CAACCAGTAACATCTGCACAGCACAAGCACTGCTGGCTAATATGTCTGGGTTCTATGCAG 158680
| ||||| ||||| || || || || || |||| || || ||| ||| | ||||| |
Sbjct 910 CTACCAGCAACATTTGTACTGCTCAGGCTTTGCTTGCAAACATGACTGCAATGTATGCTG 851
Query 158681 CATATCATGGTGCAGATGGACTACATGCTATAGC 158714
|| ||||| |||| || || | ||||| ||
Sbjct 850 TTTACCATGGACCAGAAGGCTTAAAAGCTATGGC 817
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 587584882749040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |