Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04] 63,439 sequences; 2,073,344,508 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq683 120 2e-22 seq273 120 2e-22 seq21504 116 2e-21 seq188 100 2e-16 seq94 100 2e-16 seq25626 98.7 6e-16 seq29432 95.1 8e-15 seq19201 93.3 3e-14 seq51 91.5 1e-13 seq10281 87.8 1e-12 seq31 87.8 1e-12 seq17446 86.0 4e-12 >seq683 Length=758919 Score = 120 bits (132), Expect = 2e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | ||| |||||||| ||||||||||| || || | || |||| ||| Sbjct 117143 ACCAAGTGCAGAGTGGACTCTTTCTGGATGTTATAGTCTGAGAGAGTGCGGCCATCCTCC 117202 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 |||||||| || ||||| || || | |||||||| | || | ||||||||||| Sbjct 117203 AGCTGTTTGCCCGCAAAAATCAGATGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCTTGG 117262 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 || || |||||| | | || | |||| || || || |||| || ||||| || Sbjct 117263 ATTTTGGCTTTGACATTTTCAATAGTGTCACTGGGCTTGACCTCGAGTGTGATGGTCTTG 117322 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 ||||| || || ||||||||||||||||| Sbjct 117323 CCCGTCAGGGTTTTCACAAAGATCTGCAT 117351 >seq273 Length=4066651 Score = 120 bits (132), Expect = 2e-22 Identities = 165/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 ||||||||||| | || |||| ||| | ||| |||||||| ||||| ||||| || Sbjct 887189 CCTCCCCTCAAGCGCAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCGGAC 887248 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 ||| | ||| | || |||| |||||| |||||||| || | | |||||||| | || Sbjct 887249 AGGGTGCGTCCGTCTTCCAACTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGG 887308 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAA 34932 | ||||| ||||| ||||| ||||| || || || | |||| || ||| | Sbjct 887309 ATGCCCTCTTTGTCTTGGATCTTGGCCTTGAC--ATTCTCGATGGTGTCACTGGGCTCCA 887366 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || | ||| ||||| || || || | |||||||||||||||||||| Sbjct 887367 CCTCCAGGGTGATGGTCTTACCGGTCAAGGTCTTCACAAAGATCTGCAT 887415 >seq21504 Length=484 Score = 116 bits (128), Expect = 2e-21 Identities = 154/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 34769 CAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATC 34828 ||| |||||||||| ||| |||||||| ||||| ||||| | ||| ||||| |||| Sbjct 227 CAAGACCAAGTGAAGTGTTGACTCTTTCTGGATGTTGTAGTCAGCAAGAGTTCGTCCATC 168 Query 34829 ATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34888 || || || |||||||| || |||| | ||||||||| | || | || |||||||| Sbjct 167 TTCGAGTTGCTTTCCGGCGAAGATTAACCTTTGCTGGTCCGGTGGGATGCCTTCCTTGTC 108 Query 34889 GCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGT 34948 ||||| ||| ||| | || | || | ||| || |||| ||| || || Sbjct 107 CTGTATCTTGGTTTTCACGTTGTCGATAGTGTCGGAGCTCTCCACCTCGAGGGTGATCGT 48 Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 ||||| ||||| ||||| || |||||||||||| Sbjct 47 CTTTCCGGTGAGTGTCTTGACGAAGATCTGCATA 14 Score = 82.4 bits (90), Expect = 5e-11 Identities = 146/211 (69%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG--AAAGGCTTCGTTCATCAT 34830 |||||||||| || ||| ||||| ||||| ||||| | |||| | || |||| | Sbjct 451 ACCAAGTGAAGGGTCGATTCCTTCTGGATGTTGTAGTCGGCCAAAG--TGCGACCATCCT 394 Query 34831 CCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGC 34890 | ||||| || || || || || || || |||||||| | || | ||||||||||| Sbjct 393 CAAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGTGGGATGCCCTCCTTGTCCT 334 Query 34891 TAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 ||| || ||| ||| | || | ||| | ||| || |||| ||| || || | Sbjct 333 GAATTTTGGCTTTCACGTTATCAATGGTGTCAGAGCTCTCCACTTCGAGGGTGATAGTCT 274 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || || || ||||| || ||||| ||||| Sbjct 273 TGCCTGTAAGGGTCTTGACGAAGATTTGCAT 243 >seq188 Length=3215107 Score = 100 bits (110), Expect = 2e-16 Identities = 150/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 ||| |||| | ||| |||||||| || |||||||| || || | || |||| ||| Sbjct 2830952 ACCGAGTGCAGAGTGGACTCTTTCTGGATATTATAGTCTGAGAGAGTGCGGCCATCCTCC 2830893 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 |||||||| || ||||| || || || |||||||| | || | |||||||||| Sbjct 2830892 AGCTGTTTGCCCGCAAAAATCAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTGTTTTGG 2830833 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 || || |||||| || || || | ||| || || || || | || ||||| | Sbjct 2830832 ATTTTAGCTTTGAC--ATTCTCAATAGTGTCATTGGGCTTGACCTCAAGTGTGATGGTCT 2830775 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || || || |||||||||||||||||||| Sbjct 2830774 TGCCTGTTAGGGTCTTCACAAAGATCTGCAT 2830744 >seq94 Length=5588587 Score = 100 bits (110), Expect = 2e-16 Identities = 152/212 (72%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | ||| |||||||| | || ||||| || || | | |||| ||| Sbjct 3280461 ACCAAGTGCAGAGTGGACTCTTTCTGGACATTTTAGTCTGAGAGAGTGCAGCCATCCTCC 3280402 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 | |||||| |||||||| || || || |||||||| | || | |||||||||| | | Sbjct 3280401 ATCTGTTTGCCGGCAAAAATCAGACGATGCTGGTCAGGTGGGATGCCCTCCTTGT-GTTG 3280343 Query 34893 ATCTTCTG-TTTGACGGATGCTA--TCGATTCACCGGCCTCAACATCGACGGTTATGGTT 34949 ||| | |||||| || || | | |||| || ||| || |||| || ||||| Sbjct 3280342 GACTTTAGCTTTGAC--ATTCTCAGTAGTGTCACTGGGCTCGACCTCGAGTGTGATGGTC 3280285 Query 34950 TTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || || || |||||||||||||||||||| Sbjct 3280284 TTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 3280253 >seq25626 Length=405 Score = 98.7 bits (108), Expect = 6e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||||||||| ||||| | | | | || | || || ||||| || ||||| || Sbjct 320 TCCTTCTGAATGTTGTAGTCGGCTAAGGTGCGGCCGTCTTCAAGCTGCTTCCCGGCGAAG 261 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | || |||||||| | || | ||||||||||| |||||| |||||| Sbjct 260 ATCAATCTCTGCTGGTCCGGAGGAATACCCTCCTTGTCCTGAATCTTAGCCTTGACGTTA 201 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || | |||||| || | || || || ||||| ||||||||||||||| Sbjct 200 TCAATGGTGTCTGAGCTCTCAACCTCCAAAGTAATAGTCTTTCCGGTGAGAGTCTTCACA 141 Query 34971 AAGATCTGCATA 34982 |||||||||||| Sbjct 140 AAGATCTGCATA 129 >seq29432 Length=351 Score = 95.1 bits (104), Expect = 8e-15 Identities = 165/236 (70%), Gaps = 12/236 (5%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG-- 34812 ||||| || | |||||| || | |||| ||| ||||||||| ||||| ||||| | Sbjct 112 CCTCCTCTGAGCCTCAACACAAGATGAAGCGTGGATTCTTTCTGGATGTTGTAGTCAGCC 171 Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872 |||| | || | || || ||||||||||| || || || | ||| ||||| || | | Sbjct 172 AAAG--TACGCCCGTCTTCGAGCTGTTTTCCAGCGAAGATCAATCGCTGCTGATCCGGAG 229 Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCC 34928 | | || || ||||| ||||| ||||| || | ||||| ||| || | Sbjct 230 GGATTCCTTCTTTGTCTTGGATCTTGGCCTTGAC--AT--TGTCGATGGTGTCAGAGGAC 285 Query 34929 TCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 || || |||| ||| ||||| || || || || || ||||| ||||||||||| || Sbjct 286 TCGACCTCGAGGGTGATGGTCTTGCCGGTTAGGGTTTTCACGAAGATCTGCATCTT 341 >seq19201 Length=536 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 34754 TCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGA 34813 |||||| |||| | | ||||||||||| || || ||||| ||||| || |||| Sbjct 278 TCCTCCTCTCAGACGGAGAACCAAGTGAAGCGTCGACTCCTTCTGGATGTTGTAATCCGC 337 Query 34814 AAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGG 34873 || | | | | || |||||||| || || || ||||| || || ||||| || | || Sbjct 338 GAGTGTCCTTCCGTCTTCCAGCTGCTTCCCCGCGAATATCAGCCGCTGCTGATCCGGTGG 397 Query 34874 CACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAAC 34933 | || |||||||| |||||| || || | |||| || | ||||| Sbjct 398 GATTCCTTCCTTGTCCTGGATCTTCGCCTTCACATTGTCGATCGTGTCGGACGATTCAAC 457 Query 34934 ATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 || | |||||| || || ||||| || || ||||||||||||||||| || Sbjct 458 CTCTAGGGTTATCGTCTTCCCCGTTAGGGTTTTCACAAAGATCTGCATTTT 508 >seq51 Length=16196278 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/211 (70%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | ||| ||| |||| || | |||||| || || | | |||| ||| Sbjct 11819249 ACCAAGTGCAGAGTGGACTCTCTCTGGATATCATAGTCTGAGAGAGTGCAGCCATCCTCC 11819308 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 |||||||| || ||||| || || | |||||||| | || | ||| ||||||| Sbjct 11819309 AGCTGTTTGCCTGCAAAAATCAGACACTGCTGGTCAGGTGGGATGCCCGCCTTGTCTTGG 11819368 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 || || |||||| || || | | |||| || ||| || || | || ||||| | Sbjct 11819369 ATTTTAGCTTTGAC--ATCCTCAGTAGTGTCACTGGGCTCGACCTCAAGTGTGATGGTCT 11819426 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | |||| || |||||||||||||||||||| Sbjct 11819427 TCACCGTCAGGGTCTTCACAAAGATCTGCAT 11819457 >seq10281 Length=966 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG--AAAGGCTTCGTTCATCAT 34830 |||||||| | ||| |||||||| ||||| ||||| | |||| |||| | || | Sbjct 243 ACCAAGTGGAGCGTGGACTCTTTCTGGATGTTGTAGTCGGCCAAAG--TTCGGCCGTCTT 186 Query 34831 CCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGC 34890 | |||||||| ||||| || || || | |||||||| |||| | || ||||| || Sbjct 185 CGAGCTGTTTGCCGGCGAAGATAAGCCTCTGCTGGTCCGGCGGGATGCCTTCCTTATCCT 126 Query 34891 TAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 ||||| ||| ||| | || | ||| | || || |||| ||| || || | Sbjct 125 GGATCTTGACTTTAACGTTGTCGATGGTGTCAGAGCTTTCCACCTCGAGGGTGATTGTCT 66 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 |||| ||||||||||| | ||| ||||||| || Sbjct 65 TTCCGGTGAGAGTCTTAATGAAGGTCTGCATCTT 32 >seq31 Length=7567003 Score = 87.8 bits (96), Expect = 1e-12 Identities = 148/211 (70%), Gaps = 5/211 (2%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 ||| |||| | ||| |||||||| || |||||||| || || | | |||| ||| Sbjct 4143370 ACCGAGTGCAGAGTGGACTCTTTCTGGATATTATAGTCTGAGAGAGTGTGGCCATCCTCC 4143311 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 |||||||| || ||||| || || | |||||||| |||| | |||| |||||| Sbjct 4143310 AGCTGTTTGCCTGCAAAAATCAGATGCTGCTGGTCAGGCGGGATGCCCTTCTTGTCTTGG 4143251 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 || || | |||| || || | | |||| || || || |||| || ||||| | Sbjct 4143250 ATTTTAGCTCTGAC--ATTCTCAGTAGTGTCACTGGGCTTGACCTCGAGTGTGATGGTCT 4143193 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || |||| |||||||| ||||||||||| Sbjct 4143192 TGTCCATGAGGGTCTTCAC-AAGATCTGCAT 4143163 >seq17446 Length=585 Score = 86.0 bits (94), Expect = 4e-12 Identities = 106/144 (74%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 34747 AATCAT--TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTT 34804 |||||| |||| || || | |||||| || | ||||| || |||||||||||||| Sbjct 158 AATCATGGTTCCACCTCTGAGCCTCAAGACGAGGTGAAGAGTAGACTCTTTCTGAATGTT 99 Query 34805 ATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTG 34864 || |||| ||| |||| |||| ||||| || |||||||||||||| || | || || Sbjct 98 GTAATCCGCTAGGGTTCGGCCATCTTCCAGTTGCTTTCCGGCAAATATCAGCCTCTGTTG 39 Query 34865 GTCTTGCGGCACCCCCTCCTTGTC 34888 ||| | || | || || ||||| Sbjct 38 ATCTGGTGGTATACCTTCTTTGTC 15 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324382605372792