Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04]
63,439 sequences; 2,073,344,508 total letters
Query= NC_015398.1
Length=101487
Score E
Sequences producing significant alignments: (Bits) Value
seq683 120 2e-22
seq273 120 2e-22
seq21504 116 2e-21
seq188 100 2e-16
seq94 100 2e-16
seq25626 98.7 6e-16
seq29432 95.1 8e-15
seq19201 93.3 3e-14
seq51 91.5 1e-13
seq10281 87.8 1e-12
seq31 87.8 1e-12
seq17446 86.0 4e-12
>seq683
Length=758919
Score = 120 bits (132), Expect = 2e-22
Identities = 152/209 (73%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832
|||||||| | ||| |||||||| ||||||||||| || || | || |||| |||
Sbjct 117143 ACCAAGTGCAGAGTGGACTCTTTCTGGATGTTATAGTCTGAGAGAGTGCGGCCATCCTCC 117202
Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892
|||||||| || ||||| || || | |||||||| | || | |||||||||||
Sbjct 117203 AGCTGTTTGCCCGCAAAAATCAGATGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCTTGG 117262
Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952
|| || |||||| | | || | |||| || || || |||| || ||||| ||
Sbjct 117263 ATTTTGGCTTTGACATTTTCAATAGTGTCACTGGGCTTGACCTCGAGTGTGATGGTCTTG 117322
Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981
||||| || || |||||||||||||||||
Sbjct 117323 CCCGTCAGGGTTTTCACAAAGATCTGCAT 117351
>seq273
Length=4066651
Score = 120 bits (132), Expect = 2e-22
Identities = 165/229 (72%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814
||||||||||| | || |||| ||| | ||| |||||||| ||||| ||||| ||
Sbjct 887189 CCTCCCCTCAAGCGCAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCGGAC 887248
Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874
||| | ||| | || |||| |||||| |||||||| || | | |||||||| | ||
Sbjct 887249 AGGGTGCGTCCGTCTTCCAACTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGG 887308
Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAA 34932
| ||||| ||||| ||||| ||||| || || || | |||| || ||| |
Sbjct 887309 ATGCCCTCTTTGTCTTGGATCTTGGCCTTGAC--ATTCTCGATGGTGTCACTGGGCTCCA 887366
Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981
| || | ||| ||||| || || || | ||||||||||||||||||||
Sbjct 887367 CCTCCAGGGTGATGGTCTTACCGGTCAAGGTCTTCACAAAGATCTGCAT 887415
>seq21504
Length=484
Score = 116 bits (128), Expect = 2e-21
Identities = 154/214 (72%), Gaps = 0/214 (0%)
Strand=Plus/Minus
Query 34769 CAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATC 34828
||| |||||||||| ||| |||||||| ||||| ||||| | ||| ||||| ||||
Sbjct 227 CAAGACCAAGTGAAGTGTTGACTCTTTCTGGATGTTGTAGTCAGCAAGAGTTCGTCCATC 168
Query 34829 ATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34888
|| || || |||||||| || |||| | ||||||||| | || | || ||||||||
Sbjct 167 TTCGAGTTGCTTTCCGGCGAAGATTAACCTTTGCTGGTCCGGTGGGATGCCTTCCTTGTC 108
Query 34889 GCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGT 34948
||||| ||| ||| | || | || | ||| || |||| ||| || ||
Sbjct 107 CTGTATCTTGGTTTTCACGTTGTCGATAGTGTCGGAGCTCTCCACCTCGAGGGTGATCGT 48
Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982
||||| ||||| ||||| || ||||||||||||
Sbjct 47 CTTTCCGGTGAGTGTCTTGACGAAGATCTGCATA 14
Score = 82.4 bits (90), Expect = 5e-11
Identities = 146/211 (69%), Gaps = 4/211 (2%)
Strand=Plus/Minus
Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG--AAAGGCTTCGTTCATCAT 34830
|||||||||| || ||| ||||| ||||| ||||| | |||| | || |||| |
Sbjct 451 ACCAAGTGAAGGGTCGATTCCTTCTGGATGTTGTAGTCGGCCAAAG--TGCGACCATCCT 394
Query 34831 CCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGC 34890
| ||||| || || || || || || || |||||||| | || | |||||||||||
Sbjct 393 CAAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGTGGGATGCCCTCCTTGTCCT 334
Query 34891 TAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950
||| || ||| ||| | || | ||| | ||| || |||| ||| || || |
Sbjct 333 GAATTTTGGCTTTCACGTTATCAATGGTGTCAGAGCTCTCCACTTCGAGGGTGATAGTCT 274
Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981
| || || || ||||| || ||||| |||||
Sbjct 273 TGCCTGTAAGGGTCTTGACGAAGATTTGCAT 243
>seq188
Length=3215107
Score = 100 bits (110), Expect = 2e-16
Identities = 150/211 (71%), Gaps = 4/211 (2%)
Strand=Plus/Minus
Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832
||| |||| | ||| |||||||| || |||||||| || || | || |||| |||
Sbjct 2830952 ACCGAGTGCAGAGTGGACTCTTTCTGGATATTATAGTCTGAGAGAGTGCGGCCATCCTCC 2830893
Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892
|||||||| || ||||| || || || |||||||| | || | ||||||||||
Sbjct 2830892 AGCTGTTTGCCCGCAAAAATCAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTGTTTTGG 2830833
Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950
|| || |||||| || || || | ||| || || || || | || ||||| |
Sbjct 2830832 ATTTTAGCTTTGAC--ATTCTCAATAGTGTCATTGGGCTTGACCTCAAGTGTGATGGTCT 2830775
Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981
| || || || ||||||||||||||||||||
Sbjct 2830774 TGCCTGTTAGGGTCTTCACAAAGATCTGCAT 2830744
>seq94
Length=5588587
Score = 100 bits (110), Expect = 2e-16
Identities = 152/212 (72%), Gaps = 6/212 (3%)
Strand=Plus/Minus
Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832
|||||||| | ||| |||||||| | || ||||| || || | | |||| |||
Sbjct 3280461 ACCAAGTGCAGAGTGGACTCTTTCTGGACATTTTAGTCTGAGAGAGTGCAGCCATCCTCC 3280402
Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892
| |||||| |||||||| || || || |||||||| | || | |||||||||| | |
Sbjct 3280401 ATCTGTTTGCCGGCAAAAATCAGACGATGCTGGTCAGGTGGGATGCCCTCCTTGT-GTTG 3280343
Query 34893 ATCTTCTG-TTTGACGGATGCTA--TCGATTCACCGGCCTCAACATCGACGGTTATGGTT 34949
||| | |||||| || || | | |||| || ||| || |||| || |||||
Sbjct 3280342 GACTTTAGCTTTGAC--ATTCTCAGTAGTGTCACTGGGCTCGACCTCGAGTGTGATGGTC 3280285
Query 34950 TTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981
|| || || || ||||||||||||||||||||
Sbjct 3280284 TTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 3280253
>seq25626
Length=405
Score = 98.7 bits (108), Expect = 6e-16
Identities = 137/192 (71%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850
|| ||||||||||| ||||| | | | | || | || || ||||| || ||||| ||
Sbjct 320 TCCTTCTGAATGTTGTAGTCGGCTAAGGTGCGGCCGTCTTCAAGCTGCTTCCCGGCGAAG 261
Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910
|| | || |||||||| | || | ||||||||||| |||||| ||||||
Sbjct 260 ATCAATCTCTGCTGGTCCGGAGGAATACCCTCCTTGTCCTGAATCTTAGCCTTGACGTTA 201
Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970
| || | || | |||||| || | || || || ||||| |||||||||||||||
Sbjct 200 TCAATGGTGTCTGAGCTCTCAACCTCCAAAGTAATAGTCTTTCCGGTGAGAGTCTTCACA 141
Query 34971 AAGATCTGCATA 34982
||||||||||||
Sbjct 140 AAGATCTGCATA 129
>seq29432
Length=351
Score = 95.1 bits (104), Expect = 8e-15
Identities = 165/236 (70%), Gaps = 12/236 (5%)
Strand=Plus/Plus
Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG-- 34812
||||| || | |||||| || | |||| ||| ||||||||| ||||| ||||| |
Sbjct 112 CCTCCTCTGAGCCTCAACACAAGATGAAGCGTGGATTCTTTCTGGATGTTGTAGTCAGCC 171
Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872
|||| | || | || || ||||||||||| || || || | ||| ||||| || | |
Sbjct 172 AAAG--TACGCCCGTCTTCGAGCTGTTTTCCAGCGAAGATCAATCGCTGCTGATCCGGAG 229
Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCC 34928
| | || || ||||| ||||| ||||| || | ||||| ||| || |
Sbjct 230 GGATTCCTTCTTTGTCTTGGATCTTGGCCTTGAC--AT--TGTCGATGGTGTCAGAGGAC 285
Query 34929 TCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984
|| || |||| ||| ||||| || || || || || ||||| ||||||||||| ||
Sbjct 286 TCGACCTCGAGGGTGATGGTCTTGCCGGTTAGGGTTTTCACGAAGATCTGCATCTT 341
>seq19201
Length=536
Score = 93.3 bits (102), Expect = 3e-14
Identities = 159/231 (69%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 34754 TCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGA 34813
|||||| |||| | | ||||||||||| || || ||||| ||||| || ||||
Sbjct 278 TCCTCCTCTCAGACGGAGAACCAAGTGAAGCGTCGACTCCTTCTGGATGTTGTAATCCGC 337
Query 34814 AAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGG 34873
|| | | | | || |||||||| || || || ||||| || || ||||| || | ||
Sbjct 338 GAGTGTCCTTCCGTCTTCCAGCTGCTTCCCCGCGAATATCAGCCGCTGCTGATCCGGTGG 397
Query 34874 CACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAAC 34933
| || |||||||| |||||| || || | |||| || | |||||
Sbjct 398 GATTCCTTCCTTGTCCTGGATCTTCGCCTTCACATTGTCGATCGTGTCGGACGATTCAAC 457
Query 34934 ATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984
|| | |||||| || || ||||| || || ||||||||||||||||| ||
Sbjct 458 CTCTAGGGTTATCGTCTTCCCCGTTAGGGTTTTCACAAAGATCTGCATTTT 508
>seq51
Length=16196278
Score = 91.5 bits (100), Expect = 1e-13
Identities = 148/211 (70%), Gaps = 4/211 (2%)
Strand=Plus/Plus
Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832
|||||||| | ||| ||| |||| || | |||||| || || | | |||| |||
Sbjct 11819249 ACCAAGTGCAGAGTGGACTCTCTCTGGATATCATAGTCTGAGAGAGTGCAGCCATCCTCC 11819308
Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892
|||||||| || ||||| || || | |||||||| | || | ||| |||||||
Sbjct 11819309 AGCTGTTTGCCTGCAAAAATCAGACACTGCTGGTCAGGTGGGATGCCCGCCTTGTCTTGG 11819368
Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950
|| || |||||| || || | | |||| || ||| || || | || ||||| |
Sbjct 11819369 ATTTTAGCTTTGAC--ATCCTCAGTAGTGTCACTGGGCTCGACCTCAAGTGTGATGGTCT 11819426
Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981
| |||| || ||||||||||||||||||||
Sbjct 11819427 TCACCGTCAGGGTCTTCACAAAGATCTGCAT 11819457
>seq10281
Length=966
Score = 87.8 bits (96), Expect = 1e-12
Identities = 149/214 (70%), Gaps = 4/214 (2%)
Strand=Plus/Minus
Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG--AAAGGCTTCGTTCATCAT 34830
|||||||| | ||| |||||||| ||||| ||||| | |||| |||| | || |
Sbjct 243 ACCAAGTGGAGCGTGGACTCTTTCTGGATGTTGTAGTCGGCCAAAG--TTCGGCCGTCTT 186
Query 34831 CCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGC 34890
| |||||||| ||||| || || || | |||||||| |||| | || ||||| ||
Sbjct 185 CGAGCTGTTTGCCGGCGAAGATAAGCCTCTGCTGGTCCGGCGGGATGCCTTCCTTATCCT 126
Query 34891 TAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950
||||| ||| ||| | || | ||| | || || |||| ||| || || |
Sbjct 125 GGATCTTGACTTTAACGTTGTCGATGGTGTCAGAGCTTTCCACCTCGAGGGTGATTGTCT 66
Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984
|||| ||||||||||| | ||| ||||||| ||
Sbjct 65 TTCCGGTGAGAGTCTTAATGAAGGTCTGCATCTT 32
>seq31
Length=7567003
Score = 87.8 bits (96), Expect = 1e-12
Identities = 148/211 (70%), Gaps = 5/211 (2%)
Strand=Plus/Minus
Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832
||| |||| | ||| |||||||| || |||||||| || || | | |||| |||
Sbjct 4143370 ACCGAGTGCAGAGTGGACTCTTTCTGGATATTATAGTCTGAGAGAGTGTGGCCATCCTCC 4143311
Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892
|||||||| || ||||| || || | |||||||| |||| | |||| ||||||
Sbjct 4143310 AGCTGTTTGCCTGCAAAAATCAGATGCTGCTGGTCAGGCGGGATGCCCTTCTTGTCTTGG 4143251
Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950
|| || | |||| || || | | |||| || || || |||| || ||||| |
Sbjct 4143250 ATTTTAGCTCTGAC--ATTCTCAGTAGTGTCACTGGGCTTGACCTCGAGTGTGATGGTCT 4143193
Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981
| || |||| |||||||| |||||||||||
Sbjct 4143192 TGTCCATGAGGGTCTTCAC-AAGATCTGCAT 4143163
>seq17446
Length=585
Score = 86.0 bits (94), Expect = 4e-12
Identities = 106/144 (74%), Gaps = 2/144 (1%)
Strand=Plus/Minus
Query 34747 AATCAT--TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTT 34804
|||||| |||| || || | |||||| || | ||||| || ||||||||||||||
Sbjct 158 AATCATGGTTCCACCTCTGAGCCTCAAGACGAGGTGAAGAGTAGACTCTTTCTGAATGTT 99
Query 34805 ATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTG 34864
|| |||| ||| |||| |||| ||||| || |||||||||||||| || | || ||
Sbjct 98 GTAATCCGCTAGGGTTCGGCCATCTTCCAGTTGCTTTCCGGCAAATATCAGCCTCTGTTG 39
Query 34865 GTCTTGCGGCACCCCCTCCTTGTC 34888
||| | || | || || |||||
Sbjct 38 ATCTGGTGGTATACCTTCTTTGTC 15
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 324382605372792
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