Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04]
63,439 sequences; 2,073,344,508 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq782 217 2e-51
seq3 132 5e-26
seq514 120 3e-22
seq93 107 2e-18
seq17663 98.7 1e-15
>seq782
Length=486663
Score = 217 bits (240), Expect = 2e-51
Identities = 350/494 (71%), Gaps = 17/494 (3%)
Strand=Plus/Minus
Query 46968 TTGTCTTTTTCCACAGTAAACTTAATTGGATTACTCGCTGATTTTGTTCGTAAATAATAC 47027
|| ||||| | | ||| |||| ||||||||| ||||| | ||| | ||| ||||||
Sbjct 446775 TTCTCTTTATTTAGAGTGAACTGGATTGGATTAGCCGCTGGTGCTGTCCTTAAGTAATAC 446716
Query 47028 ATACCAGTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTTAATTTAGAATAA 47087
||||||||||||||||| |||| || ||||| ||||||||||| | ||| |||
Sbjct 446715 ATACCAGTCTTTAAACCCTGCTTCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATA- 446657
Query 47088 CTAGGTTCTGAAATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCTATCA 47147
||| | ||| || || || ||||| || || |||||||| || |||||||| |||
Sbjct 446656 ----GTT-AGCAATGTGGATGTTCAGAGACTGGCTTTGATCAATGAAAGCACCTCTCTCA 446602
Query 47148 GCTGCCATATCTAAAATAACCCTTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTA 47207
|||||||| | | ||| | || | || |||||||| || ||||||| ||| ||
Sbjct 446601 GCTGCCATCTTGAGAATGGTTTTCTGAGAGATTTCCCATACAGTCTTATAAAGTTGCTTC 446542
Query 47208 ATGTCTTCTGGGAGAT-TAGTAT--TTTGAATAGATCCTCCgttttctataattttgttt 47264
| ||| || || | | | ||| | || ||||| || | | | ||||| | |||
Sbjct 446541 AAGTCATCAGGAATTTCTGATATGCTCTGGATAGAGCCATTGCATGCAATAATCTGATTT 446482
Query 47265 ttta---attcatttgaccaaagttttcgttcagtta-atgtttttaaAAGATGAGGATT 47320
|| | |||||| || ||| | | ||| | | || ||| ||| ||||||||
Sbjct 446481 TTCATCTCTTCATTCCAC--AAGCCCT-GCTCAATCAGATCTTTCAGTAAG-TGAGGATT 446426
Query 47321 AACAATTTGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTC 47380
||||| ||||||||||| || | ||||| || | || || || || ||| |||||||
Sbjct 446425 TACAATCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTGCTGGTACATGGTTC 446366
Query 47381 TATAGATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAA 47440
|| || ||||||||||| | || ||||||||||| || |||||||| | |||| |
Sbjct 446365 AATGGACTCATTATTTCCCAGGATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAG 446306
Query 47441 TAAGCTATTTCTTA 47454
||| ||||||||||
Sbjct 446305 TAAACTATTTCTTA 446292
>seq3
Length=9954913
Score = 132 bits (146), Expect = 5e-26
Identities = 111/136 (82%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042
|||| ||||| || || | |||||| |||||||| | |||||||||||||||| ||| |
Sbjct 27230 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 27171
Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102
| | ||||||||| || ||||| || ||||||||||| || ||||||||||| |||||||
Sbjct 27170 TGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCTACTGCGGCAAAAG 27111
Query 19103 CAACTAGTCTTTCTCC 19118
| || | | ||||||
Sbjct 27110 CTACAACACGTTCTCC 27095
Score = 100 bits (110), Expect = 3e-16
Identities = 111/146 (76%), Gaps = 4/146 (3%)
Strand=Plus/Minus
Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCTCTTCATTAGAATT--CATTACTCCCATT 18669
||| || ||| ||||||| | ||||||||||||| | || || ||| |||||||||
Sbjct 28625 TTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTG--TCGGACTTGACATCACTCCCATT 28568
Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729
| ||||| ||| | ||||| ||||||||||| ||||| || || || | ||| |||
Sbjct 28567 CTCTGATACTCGCCTACTCTCTTTTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATATTC 28508
Query 18730 TCCATAAAATCAAATGGATTTTTTAC 18755
||||| || ||||| || |||| |||
Sbjct 28507 TCCATGAAGTCAAACGGGTTTTCTAC 28482
>seq514
Length=1022489
Score = 120 bits (132), Expect = 3e-22
Identities = 107/134 (80%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 18985 TCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttttt 19044
|| ||||| || || | |||||| ||||| || | |||||||| || |||||||| |||
Sbjct 284463 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATAAGACCTCTTTTCTTT 284522
Query 19045 AACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCA 19104
||||||||||||| |||||| ||||| || ||||| || |||||||| || ||||| ||
Sbjct 284523 AACCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGGCC 284582
Query 19105 ACTAGTCTTTCTCC 19118
|| | ||||| ||
Sbjct 284583 ACCACCCTTTCCCC 284596
>seq93
Length=2374459
Score = 107 bits (118), Expect = 2e-18
Identities = 104/134 (78%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 47328 TGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGAT 47387
||||||||||| || | ||||| || | || || || || ||||||||||| || ||
Sbjct 38943 TGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTGCTGGTATATGGTTCAATGGAC 39002
Query 47388 TCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTA 47447
||||||||||| | || ||||||||||| || |||||||| | |||| | ||| |||
Sbjct 39003 TCATTATTTCCCAGGATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAACTA 39062
Query 47448 TTTCTTACTCCATA 47461
||||||| |||||
Sbjct 39063 TTTCTTATACCATA 39076
Score = 102 bits (112), Expect = 9e-17
Identities = 124/169 (73%), Gaps = 0/169 (0%)
Strand=Plus/Plus
Query 47050 TCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATAT 47109
|||| || ||||| ||||||||||| | ||| ||| |||| || | ||| || || |
Sbjct 36718 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATGTGGATGT 36777
Query 47110 TAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCC 47169
| ||||| || || |||||||| || |||||||| ||||||||||| | | |||
Sbjct 36778 TCAGAGACTGGCTTTGATCAATGAAAGCACCTCTCTCAGCTGCCATCTTGAGAATGGTTT 36837
Query 47170 TTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTCTTCTGG 47218
| || | || |||||||| || ||||||| ||| || | ||| || ||
Sbjct 36838 TCTGAGAGATTTCCCATACAGTCTTATAAAGTTGCTTCAAGTCATCAGG 36886
Score = 82.4 bits (90), Expect = 9e-11
Identities = 101/138 (73%), Gaps = 0/138 (0%)
Strand=Plus/Plus
Query 48600 GTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTA 48659
|| || | ||| || | || ||||| ||||| ||||||| |||| || | | ||
Sbjct 59619 GTACCAGCATTGAAGAGAGTGGGAGAGGCATGGGTAAACCACCTCTCAGAAAGAAGGTTG 59678
Query 48660 TATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATTAAC 48719
|||||||||||| ||| ||| ||||| || || || || | |||||| | ||| |||
Sbjct 59679 TATGTTTCAATAGCAGCATCAATATCTTCTTTGTGAATCCCCACAGATACCCTCATCAAC 59738
Query 48720 ATATATTGAGGTCTTTCA 48737
|||| ||| |||||||||
Sbjct 59739 ATATGTTGTGGTCTTTCA 59756
>seq17663
Length=579
Score = 98.7 bits (108), Expect = 1e-15
Identities = 231/344 (67%), Gaps = 5/344 (1%)
Strand=Plus/Plus
Query 18960 ACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAA 19019
||| ||||| ||||| || || ||||| ||||| ||| | || || || || || ||
Sbjct 216 ACAAGCAAAGTCACAGTGAAGCCCCTCATCTCTGGATATAAGCTCGTTTGAGAAAGTCAA 275
Query 19020 ACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAA 19079
||| ||||| || ||||| || || | |||||| || | | ||| ||| || |||||
Sbjct 276 ACCCGGCATAAGACCTCTCTTCTTAAGCCAGAAGATGGCACAAAAGCTTCCCGAGAAGAA 335
Query 19080 TATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATG 19139
|| ||||| || |||||||||||| || || | || || ||| | | | ||
Sbjct 336 GATTCCTTCGACGCATGCAAAAGCAACCAGCCTCACAGCAAAA--GACAT-AGGACTTTG 392
Query 19140 AATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATT 19199
|||||| | | ||| | |||||||| | || || || ||||| |||| |||
Sbjct 393 AATCCAATCTAAACACCATTTTGCCTTCTTGGAAATGCAAGGAATGGTCTCGATAGCATT 452
Query 19200 AAATAGATACATAC-GCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACA 19258
|| || | || | ||| | | ||| || | | ||| || | | | |||||||
Sbjct 453 GAACAG-TCTATCCTTCTCCTGCGAATCCTTTATAAATGTCTCCAGAAGTTGGCTGTACA 511
Query 19259 TTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAA 19302
| || |||||||| || || || || || ||||| || || |||
Sbjct 512 TCTCCGAATGAATGTTCTCCATGGCAATTTGAAACCCATAGAAA 555
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 561663054747960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |