Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04] 63,439 sequences; 2,073,344,508 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq782 217 2e-51 seq3 132 5e-26 seq514 120 3e-22 seq93 107 2e-18 seq17663 98.7 1e-15 >seq782 Length=486663 Score = 217 bits (240), Expect = 2e-51 Identities = 350/494 (71%), Gaps = 17/494 (3%) Strand=Plus/Minus Query 46968 TTGTCTTTTTCCACAGTAAACTTAATTGGATTACTCGCTGATTTTGTTCGTAAATAATAC 47027 || ||||| | | ||| |||| ||||||||| ||||| | ||| | ||| |||||| Sbjct 446775 TTCTCTTTATTTAGAGTGAACTGGATTGGATTAGCCGCTGGTGCTGTCCTTAAGTAATAC 446716 Query 47028 ATACCAGTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTTAATTTAGAATAA 47087 ||||||||||||||||| |||| || ||||| ||||||||||| | ||| ||| Sbjct 446715 ATACCAGTCTTTAAACCCTGCTTCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATA- 446657 Query 47088 CTAGGTTCTGAAATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCTATCA 47147 ||| | ||| || || || ||||| || || |||||||| || |||||||| ||| Sbjct 446656 ----GTT-AGCAATGTGGATGTTCAGAGACTGGCTTTGATCAATGAAAGCACCTCTCTCA 446602 Query 47148 GCTGCCATATCTAAAATAACCCTTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTA 47207 |||||||| | | ||| | || | || |||||||| || ||||||| ||| || Sbjct 446601 GCTGCCATCTTGAGAATGGTTTTCTGAGAGATTTCCCATACAGTCTTATAAAGTTGCTTC 446542 Query 47208 ATGTCTTCTGGGAGAT-TAGTAT--TTTGAATAGATCCTCCgttttctataattttgttt 47264 | ||| || || | | | ||| | || ||||| || | | | ||||| | ||| Sbjct 446541 AAGTCATCAGGAATTTCTGATATGCTCTGGATAGAGCCATTGCATGCAATAATCTGATTT 446482 Query 47265 ttta---attcatttgaccaaagttttcgttcagtta-atgtttttaaAAGATGAGGATT 47320 || | |||||| || ||| | | ||| | | || ||| ||| |||||||| Sbjct 446481 TTCATCTCTTCATTCCAC--AAGCCCT-GCTCAATCAGATCTTTCAGTAAG-TGAGGATT 446426 Query 47321 AACAATTTGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTC 47380 ||||| ||||||||||| || | ||||| || | || || || || ||| ||||||| Sbjct 446425 TACAATCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTGCTGGTACATGGTTC 446366 Query 47381 TATAGATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAA 47440 || || ||||||||||| | || ||||||||||| || |||||||| | |||| | Sbjct 446365 AATGGACTCATTATTTCCCAGGATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAG 446306 Query 47441 TAAGCTATTTCTTA 47454 ||| |||||||||| Sbjct 446305 TAAACTATTTCTTA 446292 >seq3 Length=9954913 Score = 132 bits (146), Expect = 5e-26 Identities = 111/136 (82%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| ||||| || || | |||||| |||||||| | |||||||||||||||| ||| | Sbjct 27230 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 27171 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | | ||||||||| || ||||| || ||||||||||| || ||||||||||| ||||||| Sbjct 27170 TGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCTACTGCGGCAAAAG 27111 Query 19103 CAACTAGTCTTTCTCC 19118 | || | | |||||| Sbjct 27110 CTACAACACGTTCTCC 27095 Score = 100 bits (110), Expect = 3e-16 Identities = 111/146 (76%), Gaps = 4/146 (3%) Strand=Plus/Minus Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCTCTTCATTAGAATT--CATTACTCCCATT 18669 ||| || ||| ||||||| | ||||||||||||| | || || ||| ||||||||| Sbjct 28625 TTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTG--TCGGACTTGACATCACTCCCATT 28568 Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729 | ||||| ||| | ||||| ||||||||||| ||||| || || || | ||| ||| Sbjct 28567 CTCTGATACTCGCCTACTCTCTTTTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATATTC 28508 Query 18730 TCCATAAAATCAAATGGATTTTTTAC 18755 ||||| || ||||| || |||| ||| Sbjct 28507 TCCATGAAGTCAAACGGGTTTTCTAC 28482 >seq514 Length=1022489 Score = 120 bits (132), Expect = 3e-22 Identities = 107/134 (80%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 18985 TCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttttt 19044 || ||||| || || | |||||| ||||| || | |||||||| || |||||||| ||| Sbjct 284463 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATAAGACCTCTTTTCTTT 284522 Query 19045 AACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCA 19104 ||||||||||||| |||||| ||||| || ||||| || |||||||| || ||||| || Sbjct 284523 AACCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGGCC 284582 Query 19105 ACTAGTCTTTCTCC 19118 || | ||||| || Sbjct 284583 ACCACCCTTTCCCC 284596 >seq93 Length=2374459 Score = 107 bits (118), Expect = 2e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 47328 TGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGAT 47387 ||||||||||| || | ||||| || | || || || || ||||||||||| || || Sbjct 38943 TGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTGCTGGTATATGGTTCAATGGAC 39002 Query 47388 TCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTA 47447 ||||||||||| | || ||||||||||| || |||||||| | |||| | ||| ||| Sbjct 39003 TCATTATTTCCCAGGATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAACTA 39062 Query 47448 TTTCTTACTCCATA 47461 ||||||| ||||| Sbjct 39063 TTTCTTATACCATA 39076 Score = 102 bits (112), Expect = 9e-17 Identities = 124/169 (73%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 47050 TCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATAT 47109 |||| || ||||| ||||||||||| | ||| ||| |||| || | ||| || || | Sbjct 36718 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATGTGGATGT 36777 Query 47110 TAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCC 47169 | ||||| || || |||||||| || |||||||| ||||||||||| | | ||| Sbjct 36778 TCAGAGACTGGCTTTGATCAATGAAAGCACCTCTCTCAGCTGCCATCTTGAGAATGGTTT 36837 Query 47170 TTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTCTTCTGG 47218 | || | || |||||||| || ||||||| ||| || | ||| || || Sbjct 36838 TCTGAGAGATTTCCCATACAGTCTTATAAAGTTGCTTCAAGTCATCAGG 36886 Score = 82.4 bits (90), Expect = 9e-11 Identities = 101/138 (73%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 48600 GTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTA 48659 || || | ||| || | || ||||| ||||| ||||||| |||| || | | || Sbjct 59619 GTACCAGCATTGAAGAGAGTGGGAGAGGCATGGGTAAACCACCTCTCAGAAAGAAGGTTG 59678 Query 48660 TATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATTAAC 48719 |||||||||||| ||| ||| ||||| || || || || | |||||| | ||| ||| Sbjct 59679 TATGTTTCAATAGCAGCATCAATATCTTCTTTGTGAATCCCCACAGATACCCTCATCAAC 59738 Query 48720 ATATATTGAGGTCTTTCA 48737 |||| ||| ||||||||| Sbjct 59739 ATATGTTGTGGTCTTTCA 59756 >seq17663 Length=579 Score = 98.7 bits (108), Expect = 1e-15 Identities = 231/344 (67%), Gaps = 5/344 (1%) Strand=Plus/Plus Query 18960 ACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAA 19019 ||| ||||| ||||| || || ||||| ||||| ||| | || || || || || || Sbjct 216 ACAAGCAAAGTCACAGTGAAGCCCCTCATCTCTGGATATAAGCTCGTTTGAGAAAGTCAA 275 Query 19020 ACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAA 19079 ||| ||||| || ||||| || || | |||||| || | | ||| ||| || ||||| Sbjct 276 ACCCGGCATAAGACCTCTCTTCTTAAGCCAGAAGATGGCACAAAAGCTTCCCGAGAAGAA 335 Query 19080 TATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATG 19139 || ||||| || |||||||||||| || || | || || ||| | | | || Sbjct 336 GATTCCTTCGACGCATGCAAAAGCAACCAGCCTCACAGCAAAA--GACAT-AGGACTTTG 392 Query 19140 AATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATT 19199 |||||| | | ||| | |||||||| | || || || ||||| |||| ||| Sbjct 393 AATCCAATCTAAACACCATTTTGCCTTCTTGGAAATGCAAGGAATGGTCTCGATAGCATT 452 Query 19200 AAATAGATACATAC-GCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACA 19258 || || | || | ||| | | ||| || | | ||| || | | | ||||||| Sbjct 453 GAACAG-TCTATCCTTCTCCTGCGAATCCTTTATAAATGTCTCCAGAAGTTGGCTGTACA 511 Query 19259 TTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAA 19302 | || |||||||| || || || || || ||||| || || ||| Sbjct 512 TCTCCGAATGAATGTTCTCCATGGCAATTTGAAACCCATAGAAA 555 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561663054747960