Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04] 63,439 sequences; 2,073,344,508 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq10281 123 2e-23 seq19370 109 4e-19 seq69 93.3 3e-14 >seq10281 Length=966 Score = 123 bits (136), Expect = 2e-23 Identities = 157/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||| || || || ||||| ||||| || || || || ||||| || || | ||| | | | Sbjct 706 ACGCAAGACCAAGTGAAGCGTAGACTCCTTCTGGATGTTGTAGTCAGCCAAAGTCCGGCC 647 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 || || | ||||| |||||||| ||||| | ||| ||||| || || ||||||||||| Sbjct 646 GTCTTCGAGCTGCTTTCCTGCAAAGATCAATCTCTGCTGATCCGGTGGGATGCCTTCTTT 587 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 ||||| ||||| ||| || | || | || ||||| | ||||| || | ||| | Sbjct 586 GTCTTGGATTTTGGCTTTCACGTTGTCGATGGTATCAGAGCTCTCCACCTCCAAAGTAAT 527 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||| || || || || ||||| ||||| || ||||| Sbjct 526 CGTCTTCCCCGTCAAGGTTTTAACAAAGATTTGCAT 491 Score = 102 bits (112), Expect = 6e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325 |||||| || || || || || || ||||| || || | ||| | | |||| || | || Sbjct 466 ATGAAGTGTCGACTCCTTCTGGATGTTGTAGTCAGCAAGAGTCCGGCCATCCTCGAGCTG 407 Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 ||| || ||||| ||||| | || || || || || || || || |||||||||||||| Sbjct 406 CTTTCCGGCAAAGATCAACCTTTGCTGGTCCGGTGGTATACCCTCCTTATCTTGAATTTT 347 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 || || | || || ||||| || | || || || || |||| ||| || || || Sbjct 346 AGCCTTGACGTTGTCGACGGTGTCGGAGCTCTCGACCTCGAGGGTGATCGTCTTCCCCGT 287 Query 101446 TAAAGTTTTTACAAATATCTGCAT 101469 || ||||| || || |||||||| Sbjct 286 TAGGGTTTTGACGAAGATCTGCAT 263 >seq19370 Length=533 Score = 109 bits (120), Expect = 4e-19 Identities = 137/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || || |||||||||||||| |||||||| ||||| | || | | |||| || | || Sbjct 188 TGCAGTGTAGATTCTTTTTGAATATTGTAGTCGGCCAAGGTACGGCCATCCTCGAGCTGT 129 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || || || ||||| | ||| ||||| || || |||||||| || ||||||||||| Sbjct 128 TTTCCGGCGAAGATCAACCTCTGCTGATCCGGAGGGATGCCTTCCTTGTCTTGAATTTTG 69 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || ||| | || | ||||| | || || || ||||||| || ||||||||| Sbjct 68 GCCTTGACATTGTCGATGGTGTCGCTGCTCTCGACCTCGAGAGTGATGGTCTTGCCGGTT 9 Query 101447 AAAGTTTT 101454 | ||||| Sbjct 8 AGGGTTTT 1 >seq69 Length=3989787 Score = 93.3 bits (102), Expect = 3e-14 Identities = 149/213 (70%), Gaps = 1/213 (0%) Strand=Plus/Minus Query 101258 AAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCG 101317 || || | ||||||||| || || ||| | || |||| | | | ||| | || | Sbjct 665499 AACACAAGATGAAGGGTGGACTCCTTTGGAATGCTGTAGCCAGACACAGTGCGTCCAGCT 665440 Query 101318 TCCAATTGCTTACCTGCAAATATCAAACGCT-GTTGATCGGGCGGAATGCCTTCTTTATC 101376 |||| |||||| || ||||| |||| | | | ||||| || | ||| ||||||||||| Sbjct 665439 TCCAGTTGCTTGCCAGCAAAGATCAGTCTTTTGCTGATCAGGAGAAATTCCTTCTTTATC 665380 Query 101377 TTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGT 101436 || || | |||||| |||||| || || || | ||| || ||||| |||| || Sbjct 665379 CTGGATCTGGGCCTTTACATTTTCTATTGTATCCGAGGGTTCAACCTCAAGGGTGATGGT 665320 Query 101437 TTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || || | |||||| || || |||||||| Sbjct 665319 CTTCCCAGTAAGAGTTTTCACGAAAATCTGCAT 665287 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395972012277723