Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04]
63,439 sequences; 2,073,344,508 total letters
Query= NC_019401.1
Length=358663
Score E
Sequences producing significant alignments: (Bits) Value
seq7702 129 1e-24
>seq7702
Length=1240
Score = 129 bits (142), Expect = 1e-24
Identities = 342/512 (67%), Gaps = 19/512 (4%)
Strand=Plus/Plus
Query 150284 ACTAACCTAACTGATCTTGCAGCAGAAGGTAAACTTGATCCACTAATTGGTCGCGAAACT 150343
|||||||| ||| | || |||| || |||||||| |||||| | |||| | | |
Sbjct 138 ACTAACCTGACTAAACTAGCAGAGGAGGGTAAACTCGATCCAGTTGTTGGAAGGCAGCCA 197
Query 150344 GAACTTGATGATCTAATTCAGATTCTTTCTCGTAAAACCAAAAAGAATG-GTGCGTTAGT 150402
|| |||| | | ||||| | ||| | |||||| || ||| ||| ||| |
Sbjct 198 CAAATTGAACGAGTTGTCCAGATCTTGGGTCGAAGAACCAAGAATAATCCGTGTCTTA-T 256
Query 150403 TGGTGAACCAGGTGTTGGTAAAACACAAATCGTTGACGGATTAGCACAACGCATCGCTAA 150462
||| ||||| || |||||||| ||| || | ||| ||| | || || | || ||||
Sbjct 257 TGGAGAACCTGGAGTTGGTAAGACAGCTATAGCTGAAGGACTCGCTCAGAGAATTGCTAG 316
Query 150463 TGGTGATGTTCCAGATTCTA-TGA----AAGATGTTGAAATTCTTTCTTTGAATATGGGT 150517
|||||||||||| || | | ||| |||| | | | | | || ||||||||
Sbjct 317 TGGTGATGTTCCTGAAACAACTGAGGGGAAGACGGTTATAACCCTTG-----ATATGGGT 371
Query 150518 GCATTTACTG-CTGGTACTAAGTATCGTGGTGAATTCGAAGAACGTGTAGACAATTTGCT 150576
| | || || |||| || ||||||||||| |||||||| ||| | | | || | |
Sbjct 372 -CTTCTAGTGGCTGGAACCAAGTATCGTGGAGAATTCGAGGAAAGATTGAAGAAGCTTAT 430
Query 150577 ACAAGAACTAAAAGAACGCGATGATGTTATTCTGTTCATCGATGAAATCCATACTATTAT 150636
| || | | | || | ||||| | |||||||| || |||||| | || ||| | ||
Sbjct 431 GGAGGAGATCAGACAAAGTGATGACATCATTCTGTTTATTGATGAAGTGCACACTCTGAT 490
Query 150637 GGGTGCTGGTGCGACTGGCGGCGGTTCTTTGGATATGAGCAATATGTTAAAACCTGCTCT 150696
||||| || || | || ||| | | ||| ||| || ||||| || |||||
Sbjct 491 CGGTGCAGGAGCCGC---CGAAGGTGCCATTGATGCTGCCAACATCTTAAAGCCAGCTCT 547
Query 150697 ATCTCGCGGTGAAATTC-GTGTCATCGGTGCAACAACCTACGATGAATATCGTAAACACA 150755
| | |||||| | | |||| || ||||||||||| | ||||| || | || ||||
Sbjct 548 TGCAAGAGGTGAATTGCAGTGT-ATTGGTGCAACAACATTGGATGAGTACAGAAAGCACA 606
Query 150756 TTGAAAAAGATGCAGCACTACAGCGTCGTTTC 150787
|||| |||||| | ||| | |||| || |||
Sbjct 607 TTGAGAAAGATCCTGCATTGGAGCGACGGTTC 638
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1146657624536622
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |