Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04] 63,439 sequences; 2,073,344,508 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq233 178 2e-39 seq124 132 9e-26 seq185 93.3 8e-14 seq93 93.3 8e-14 >seq233 Length=1369459 Score = 178 bits (196), Expect = 2e-39 Identities = 187/244 (77%), Gaps = 4/244 (2%) Strand=Plus/Plus Query 241385 AGCTGCTGACAGCCTTGGC--ACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCT 241442 ||| |||| ||||| | || ||||| | || ||||| ||||||||| |||||||||| Sbjct 1264126 AGCAGCTGGCAGCCGTTGCTAACATGGGTCAT--GACCTTCTGTTTGAGCTGGGCCACCT 1264183 Query 241443 GGTCCCGCAGAACGGACGCGGTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCA 241502 | ||||| || | | || || |||| || |||||||| || | |||||| ||||| Sbjct 1264184 GCTCCCGGAGGAGGCCGGCAGTGCTGGAGAGCCCTGCGTTCTCCGCCTTGAGTGTCTTCA 1264243 Query 241503 CTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCA 241562 | || ||||| || ||||||||||| ||||| || ||| ||||| |||||||| |||| Sbjct 1264244 CCTTGTCCTCTAGGCGCGCGATGCGCTCCAGCTTCCGCTTCCGGCACTTGGTGGCCGCCA 1264303 Query 241563 AGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCG 241622 |||||||| || | ||| || ||| | |||||||| |||||||| ||||||| ||| | Sbjct 1264304 GCCGGTTCCGCAGCCGCTTGCGCTCCACTTTGATGCGCTCCTGGTCTTCCATGTTGATGG 1264363 Query 241623 GAGA 241626 | || Sbjct 1264364 GGGA 1264367 >seq124 Length=4807193 Score = 132 bits (146), Expect = 9e-26 Identities = 161/217 (74%), Gaps = 8/217 (4%) Strand=Plus/Plus Query 241415 AGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGAC--- 241471 ||||||| ||| ||||| || |||||||| || ||||| | | ||| || |||| Sbjct 1844827 AGGACCTTCTGCTTGAGCTGCGCCACCTGCTCGCGCAGCAGGCTCGCCGT---GGACGCC 1844883 Query 241472 -AGTCCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTC 241530 | ||| | ||| | ||||||| ||||||||||||||| || |||| |||||| || Sbjct 1844884 AACTCC-GAGTTCTGGCTCTTGAGCGTCTTCACTTTCTCCTCGAGGCGCGAGATGCGCTC 1844942 Query 241531 CAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGC 241590 ||| |||||| |||||| |||| || || | |||||| || || | ||| || ||||| Sbjct 1844943 CAGCTTGCGCTTGCGGCACTTGGAAGCAGCTATGCGGTTTCGCAGCCGCTTGCGCTCCGC 1845002 Query 241591 CTTGATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627 ||||||||| || || |||||||| || || ||| Sbjct 1845003 CTTGATGCGCTCTTGCGTGTCCATGTCTATGGGCGAC 1845039 >seq185 Length=2855200 Score = 93.3 bits (102), Expect = 8e-14 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 241499 TTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCT 241558 |||||||| ||||||||||| ||||| | ||||| || | ||||| |||| ||| Sbjct 2017033 TTCACTTTTTCCTCCAGCCGGGCGATCCTCTCCAGCTTCCTTTTCCGGCACTTGGAGGCA 2017092 Query 241559 GCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCG 241618 || | |||||||| | | ||| | ||||||||||| || |||||| |||||||||| Sbjct 2017093 GCGATGCGGTTCCTCATGCGCTTTCTCTCCGCCTTGATCCGCTCCTGGGACTCCATGTCG 2017152 Query 241619 ATCGGAGAC 241627 || || ||| Sbjct 2017153 ATGGGTGAC 2017161 >seq93 Length=2374459 Score = 93.3 bits (102), Expect = 8e-14 Identities = 97/125 (78%), Gaps = 2/125 (2%) Strand=Plus/Plus Query 213527 TGTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTG 213586 ||| ||||| | || || |||||||| ||||||||| ||| || ||||||||||| || Sbjct 51183 TGTATACTCTACTATTTCTGTGCACAGATTGCTGCATTTGATCGTTCCCAGGTTCTGCTG 51242 Query 213587 GTTTGACTTTGCGTTGGCA-GAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCT 213645 | ||| ||| || | || ||||| |||||||||||||| |||| || |||||| || Sbjct 51243 G-TTGCTTTTCCGGTTACAGGAATCTTTGTAGAGCATGTATGGGGTACCTGTCTCTGTCT 51301 Query 213646 GGGAC 213650 | ||| Sbjct 51302 GCGAC 51306 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 930794106133760