Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04]
63,439 sequences; 2,073,344,508 total letters
Query= NC_019491.1
Length=291144
Score E
Sequences producing significant alignments: (Bits) Value
seq233 178 2e-39
seq124 132 9e-26
seq185 93.3 8e-14
seq93 93.3 8e-14
>seq233
Length=1369459
Score = 178 bits (196), Expect = 2e-39
Identities = 187/244 (77%), Gaps = 4/244 (2%)
Strand=Plus/Plus
Query 241385 AGCTGCTGACAGCCTTGGC--ACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCT 241442
||| |||| ||||| | || ||||| | || ||||| ||||||||| ||||||||||
Sbjct 1264126 AGCAGCTGGCAGCCGTTGCTAACATGGGTCAT--GACCTTCTGTTTGAGCTGGGCCACCT 1264183
Query 241443 GGTCCCGCAGAACGGACGCGGTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCA 241502
| ||||| || | | || || |||| || |||||||| || | |||||| |||||
Sbjct 1264184 GCTCCCGGAGGAGGCCGGCAGTGCTGGAGAGCCCTGCGTTCTCCGCCTTGAGTGTCTTCA 1264243
Query 241503 CTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCA 241562
| || ||||| || ||||||||||| ||||| || ||| ||||| |||||||| ||||
Sbjct 1264244 CCTTGTCCTCTAGGCGCGCGATGCGCTCCAGCTTCCGCTTCCGGCACTTGGTGGCCGCCA 1264303
Query 241563 AGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCG 241622
|||||||| || | ||| || ||| | |||||||| |||||||| ||||||| ||| |
Sbjct 1264304 GCCGGTTCCGCAGCCGCTTGCGCTCCACTTTGATGCGCTCCTGGTCTTCCATGTTGATGG 1264363
Query 241623 GAGA 241626
| ||
Sbjct 1264364 GGGA 1264367
>seq124
Length=4807193
Score = 132 bits (146), Expect = 9e-26
Identities = 161/217 (74%), Gaps = 8/217 (4%)
Strand=Plus/Plus
Query 241415 AGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGAC--- 241471
||||||| ||| ||||| || |||||||| || ||||| | | ||| || ||||
Sbjct 1844827 AGGACCTTCTGCTTGAGCTGCGCCACCTGCTCGCGCAGCAGGCTCGCCGT---GGACGCC 1844883
Query 241472 -AGTCCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTC 241530
| ||| | ||| | ||||||| ||||||||||||||| || |||| |||||| ||
Sbjct 1844884 AACTCC-GAGTTCTGGCTCTTGAGCGTCTTCACTTTCTCCTCGAGGCGCGAGATGCGCTC 1844942
Query 241531 CAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGC 241590
||| |||||| |||||| |||| || || | |||||| || || | ||| || |||||
Sbjct 1844943 CAGCTTGCGCTTGCGGCACTTGGAAGCAGCTATGCGGTTTCGCAGCCGCTTGCGCTCCGC 1845002
Query 241591 CTTGATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627
||||||||| || || |||||||| || || |||
Sbjct 1845003 CTTGATGCGCTCTTGCGTGTCCATGTCTATGGGCGAC 1845039
>seq185
Length=2855200
Score = 93.3 bits (102), Expect = 8e-14
Identities = 98/129 (76%), Gaps = 0/129 (0%)
Strand=Plus/Plus
Query 241499 TTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCT 241558
|||||||| ||||||||||| ||||| | ||||| || | ||||| |||| |||
Sbjct 2017033 TTCACTTTTTCCTCCAGCCGGGCGATCCTCTCCAGCTTCCTTTTCCGGCACTTGGAGGCA 2017092
Query 241559 GCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCG 241618
|| | |||||||| | | ||| | ||||||||||| || |||||| ||||||||||
Sbjct 2017093 GCGATGCGGTTCCTCATGCGCTTTCTCTCCGCCTTGATCCGCTCCTGGGACTCCATGTCG 2017152
Query 241619 ATCGGAGAC 241627
|| || |||
Sbjct 2017153 ATGGGTGAC 2017161
>seq93
Length=2374459
Score = 93.3 bits (102), Expect = 8e-14
Identities = 97/125 (78%), Gaps = 2/125 (2%)
Strand=Plus/Plus
Query 213527 TGTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTG 213586
||| ||||| | || || |||||||| ||||||||| ||| || ||||||||||| ||
Sbjct 51183 TGTATACTCTACTATTTCTGTGCACAGATTGCTGCATTTGATCGTTCCCAGGTTCTGCTG 51242
Query 213587 GTTTGACTTTGCGTTGGCA-GAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCT 213645
| ||| ||| || | || ||||| |||||||||||||| |||| || |||||| ||
Sbjct 51243 G-TTGCTTTTCCGGTTACAGGAATCTTTGTAGAGCATGTATGGGGTACCTGTCTCTGTCT 51301
Query 213646 GGGAC 213650
| |||
Sbjct 51302 GCGAC 51306
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 930794106133760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |