Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04] 63,439 sequences; 2,073,344,508 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq273 86.0 5e-12 seq17446 84.2 2e-11 >seq273 Length=4066651 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 |||||| || ||||| || || || || ||||| ||||| ||| || ||| || Sbjct 887416 AATGCAGATCTTTGTGAAGACCTTGACCGGTAAGACCATCACCCTGGAGGTGGAGCCCAG 887357 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | || ||||| || ||| ||||||||||| | ||| || || Sbjct 887356 TGACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCCCCTGACCA 887297 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||||| | |||||||| |||||||| |||||||| || || |||| || || Sbjct 887296 GCAGAGGTTGATCTTTGCCGGCAAACAGTTGGAAGACGGACGCACCCTGTCCGACTACAA 887237 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGT 28762 ||| || ||||| || ||||||||| |||| Sbjct 887236 CATCCAGAAAGAGTCCACTCTGCACCTGGT 887207 >seq17446 Length=585 Score = 84.2 bits (92), Expect = 2e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 28638 AAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAACAGAGACTTATCTTTGCGGGCAAA 28697 |||||| |||||||| || | || |||||||||||| || || ||||| || || Sbjct 6 AAAATCCAGGACAAAGAAGGTATACCACCAGATCAACAGAGGCTGATATTTGCCGGAAAG 65 Query 28698 CAATTGGAAGATTCTAAAACTATGGCCGATTATAACATTCAAAAAGAATCTACTCTGCAC 28757 ||| |||||||| ||| | || ||||| |||||||| ||||| |||||||| ||| Sbjct 66 CAACTGGAAGATGGCCGAACCCTAGCGGATTACAACATTCAGAAAGAGTCTACTCTTCAC 125 Query 28758 ATGGTATTAAG 28768 | || || || Sbjct 126 CTCGTCTTGAG 136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425075892828381