Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04] 63,439 sequences; 2,073,344,508 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq123 322 6e-83 seq107 152 6e-32 seq201 107 2e-18 >seq123 Length=7988377 Score = 322 bits (356), Expect = 6e-83 Identities = 666/985 (68%), Gaps = 11/985 (1%) Strand=Plus/Minus Query 160052 CAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTATTTGC 160111 |||||| || |||| ||| |||| ||| || | ||| | |||| ||| || ||||| || Sbjct 3432387 CAGATGCTCATCCAAACACTGGATGGCAAAGAGGTCGATGTCTGTGTCAAACTTATTAGC 3432328 Query 160112 GAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACGCAGAC 160171 |||| ||||| || | | ||||||| || ||| || | || || || || || Sbjct 3432327 AAACAAGTGGTGC---TTGCGCAACATCCAGTTCAAGTCACCTGCTCCAAAAACACACAC 3432271 Query 160172 GGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCACCTTC 160231 || |||||||| || |||||||| |||||||| | || || || | || |||||||| Sbjct 3432270 AGAGCGTATGTGGACACCGTTGCAGGGCGGGTAGGGGGCGCCCTTGGAAACATCACCTTC 3432211 Query 160232 GTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTATTTGTA 160291 ||||||||||||| |||||||| || || || ||||||||||| |||| || || | Sbjct 3432210 AAAGTACTGCCACTTGACAAACCTAGCAATTGCATGCATGTCGGACATGTCATACTTATG 3432151 Query 160292 CATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGGTGTTC 160351 | |||| | | || ||||| | || || | ||| | |||||||| || | || Sbjct 3432150 GCTTAGGGACAGTGAGCCTGGAACTTCAGGGATCCTCTGAATAGTGGCCCAGAGATACTC 3432091 Query 160352 GTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCTGTCCCGCAG 160411 || |||||||| ||||| || | ||| ||||| |||| | |||| | | || Sbjct 3432090 ATCTGGGCTGTATGTGTCTTTTGCCCACTCCATAAACTTTTGGATTTTTTCATTCTCTAG 3432031 Query 160412 AACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATATCGGTAT 160471 || | || || || | || ||||| || || ||||| || || | ||| | Sbjct 3432030 CACATACTCCACATAATTCCTACTGACCACAAAATAGGCACTGCCTGAAAACAGAGGTGT 3431971 Query 160472 GGGTATAGGCGGCGTGTC-TTTGTCCTGACCGGTGTTAGACACCACTCCTTTCACCAGCG 160530 | ||| ||| ||| |||||| || ||||| | || ||| || || | | Sbjct 3431970 TTCAAGAGGAGGC-TGTAGTTTGTCAGTCCCTGTGTTTGTCAGTTTTCCATTAACAATGG 3431912 Query 160531 CGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCTAGACTGT 160590 | |||| |||||||| | | || | | |||||| || || ||||| ||| Sbjct 3431911 TATAGTGCTTTTTCCACCTTTCTTTTTTATTGGATGGCATTTTCTCAGTTTCTAGGTTGT 3431852 Query 160591 TGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGCGGAAAGT 160650 | | || | | ||| || || | | || || || ||||| || || | ||||| | Sbjct 3431851 TTTCTCCCTTTAACGACTTGAGTTTCCCAACAATTTCCAGGTTGGTTTTAATAGGAAAAT 3431792 Query 160651 CGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAGGTCCCTCA 160710 | |||| || | ||||||| ||||||||| | || |||| || |||||| || Sbjct 3431791 CCATACCACAAAGATTTATCAAGTACTTCCAGTCTGCACTCATTCGGTAGAGGTCCTGCA 3431732 Query 160711 TGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTAGTTTAC 160770 | || || | ||| ||||| || || ||||| || |||||||| || |||| || | || Sbjct 3431731 TACAGTTGAGATCGGCCTGAACCCGACTCCACGATGCGTACACCACAGTCTCCAGCTGAC 3431672 Query 160771 TGGCCACAAAGACGTTATCGAAACACGACACGATTCC---CACCACCGCCAGAAAGAACA 160827 |||||||||||||||| |||||| || | || || ||| | |||| |||| | | Sbjct 3431671 TGGCCACAAAGACGTTGCTGAAACAGGATGCAATGCCAAGTACCGCAGCCAAAAAGGA-A 3431613 Query 160828 TCTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATGGCCC 160887 || || | ||| |||||| || | |||||| | ||||||||| |||||||||| Sbjct 3431612 TC--CTCTGATTTTTTGTCCACATGAATGCAATAGAAATTCTGAGGCATATAGATGGCCC 3431555 Query 160888 TGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTATCGGAA 160947 | | | ||| || | ||| || || || ||||| | ||| || || || ||||| |||| Sbjct 3431554 TCAAGAGCCTGTCAAGCATTTCAATTTTGTGATGAACCACTATGGAATATGCTATTGGAA 3431495 Query 160948 ACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGATAAAATAAT 161007 ||| ||| || ||| |||| | | ||||| ||| ||||||| ||| || Sbjct 3431494 ACTTTTCCTCTTCTTTACTAAGGGGTTCTACAATATACTTGCGCTTCTTGATGAAAGAAG 3431435 Query 161008 CACAATCCCGCGTCATGTTGATATA 161032 |||||| | |||||||| ||||| Sbjct 3431434 TACAATCACTAGTCATGTTTATATA 3431410 >seq107 Length=5366022 Score = 152 bits (168), Expect = 6e-32 Identities = 225/319 (71%), Gaps = 0/319 (0%) Strand=Plus/Plus Query 168151 ATAGAGTCAAGCACGTTTTTCCAGAAATCTTGCCTGATCCGAACGTGTTGAAGAGGCACA 168210 ||||||| | ||| | |||||| | | || || || || || || || |||||||| Sbjct 5323578 ATAGAGTGAGGCAGGCTTTTCCGAAGACATTCCCAGAACCAAATGTATTAAAGAGGCATT 5323637 Query 168211 TGAAGCAGCCTTCGTCCTCCACGGTGGTATTCCAAAATGTTAGCGTTGAGTTTCGGAGGC 168270 | | || || || ||||||| |||||||||||| || || | |||||||| |||| | Sbjct 5323638 GGTAACATCCCTCATCCTCCAGGGTGGTATTCCAGAAGGTAATGGTTGAGTTCTGGAGTC 5323697 Query 168271 CCAACTGCGTTATGTTCACACGATCTTTATAAGGAGGTTGAACTACAACGCCGTGGTTCT 168330 ||| || || ||||| | || ||||| | || || || ||||| || ||| || Sbjct 5323698 CCAGCTCAGTGATGTTGATCTTGTCCTTATAGGCTGGCTGGACCACAACCCCATGGGACT 5323757 Query 168331 CGCTGAAGGTGGCCATGTTCTCCGGGCTGGTGGCCTTTATCTTCTGCCAGGTTACTATCA 168390 |||||||||| ||||||| || ||||| || ||||| || |||||||| || || | || Sbjct 5323758 TGCTGAAGGTGACCATGTTTTCTGGGCTAGTAGCCTTGATTTTCTGCCACGTCACAACCA 5323817 Query 168391 GAACCTCTTTATCGGTCTGCAGGGAACATCTCAGCGAAGCCGGAGTGTTCAGCAGTTCTC 168450 || || || ||| || |||| | ||||| || ||||||||||| | | Sbjct 5323818 AGACTTCCCGGGAAGTTCCCAGAGAGCATCGTAAGGAAGCAGGTGTGTTCAGCAGCTTTT 5323877 Query 168451 GCTCATCTTGAGTTACGAC 168469 ||||||||||| || || Sbjct 5323878 TTTCATCTTGAGTCACCAC 5323896 >seq201 Length=2760491 Score = 107 bits (118), Expect = 2e-18 Identities = 140/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 176232 AGATATTTTACTAGGTCACGTGGCGAGTCATAATCATTAACATGTATAAATGCGTGTGGT 176291 ||||| ||| |||| |||| || |||| |||||| | ||||| || |||| | || | Sbjct 2646442 AGATACTTTGCTAGCTCACTGGGAGAGTTATAATCTTCGACATGAATGAATGAATCTGCT 2646501 Query 176292 GGAATGTAGTTTTCATAATTTTGTCTGGAGGGTCCTAAAACTATTGGTACGGTACGTGCT 176351 ||||| || |||||||| |||| ||| || || || | ||| | ||||| | | || Sbjct 2646502 GGAATATAATTTTCATAGTTTTCTCTAGATGGCCCCAGAACAACAGGTACAGAGCCAGCC 2646561 Query 176352 AATAATGAGCGGTAGATCTTTTCTGAGATGTAGTCAGTGTGAATTGAGTTTTCAAAAGCT 176411 | || | ||||| |||||||| |||||| || |||| |||||||||||||| | Sbjct 2646562 AGAAAAGCATTGTAGAGCTTTTCTGTGATGTAATCTTTGTGGATTGAGTTTTCAAAGGAA 2646621 Query 176412 AAATAGAACTTACA 176425 | ||| || || || Sbjct 2646622 AGATAAAATTTGCA 2646635 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 576761472389640