Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04]
63,439 sequences; 2,073,344,508 total letters
Query= NC_020474.2
Length=180421
Score E
Sequences producing significant alignments: (Bits) Value
seq123 322 6e-83
seq107 152 6e-32
seq201 107 2e-18
>seq123
Length=7988377
Score = 322 bits (356), Expect = 6e-83
Identities = 666/985 (68%), Gaps = 11/985 (1%)
Strand=Plus/Minus
Query 160052 CAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTATTTGC 160111
|||||| || |||| ||| |||| ||| || | ||| | |||| ||| || ||||| ||
Sbjct 3432387 CAGATGCTCATCCAAACACTGGATGGCAAAGAGGTCGATGTCTGTGTCAAACTTATTAGC 3432328
Query 160112 GAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACGCAGAC 160171
|||| ||||| || | | ||||||| || ||| || | || || || || ||
Sbjct 3432327 AAACAAGTGGTGC---TTGCGCAACATCCAGTTCAAGTCACCTGCTCCAAAAACACACAC 3432271
Query 160172 GGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCACCTTC 160231
|| |||||||| || |||||||| |||||||| | || || || | || ||||||||
Sbjct 3432270 AGAGCGTATGTGGACACCGTTGCAGGGCGGGTAGGGGGCGCCCTTGGAAACATCACCTTC 3432211
Query 160232 GTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTATTTGTA 160291
||||||||||||| |||||||| || || || ||||||||||| |||| || || |
Sbjct 3432210 AAAGTACTGCCACTTGACAAACCTAGCAATTGCATGCATGTCGGACATGTCATACTTATG 3432151
Query 160292 CATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGGTGTTC 160351
| |||| | | || ||||| | || || | ||| | |||||||| || | ||
Sbjct 3432150 GCTTAGGGACAGTGAGCCTGGAACTTCAGGGATCCTCTGAATAGTGGCCCAGAGATACTC 3432091
Query 160352 GTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCTGTCCCGCAG 160411
|| |||||||| ||||| || | ||| ||||| |||| | |||| | | ||
Sbjct 3432090 ATCTGGGCTGTATGTGTCTTTTGCCCACTCCATAAACTTTTGGATTTTTTCATTCTCTAG 3432031
Query 160412 AACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATATCGGTAT 160471
|| | || || || | || ||||| || || ||||| || || | ||| |
Sbjct 3432030 CACATACTCCACATAATTCCTACTGACCACAAAATAGGCACTGCCTGAAAACAGAGGTGT 3431971
Query 160472 GGGTATAGGCGGCGTGTC-TTTGTCCTGACCGGTGTTAGACACCACTCCTTTCACCAGCG 160530
| ||| ||| ||| |||||| || ||||| | || ||| || || | |
Sbjct 3431970 TTCAAGAGGAGGC-TGTAGTTTGTCAGTCCCTGTGTTTGTCAGTTTTCCATTAACAATGG 3431912
Query 160531 CGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCTAGACTGT 160590
| |||| |||||||| | | || | | |||||| || || ||||| |||
Sbjct 3431911 TATAGTGCTTTTTCCACCTTTCTTTTTTATTGGATGGCATTTTCTCAGTTTCTAGGTTGT 3431852
Query 160591 TGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGCGGAAAGT 160650
| | || | | ||| || || | | || || || ||||| || || | ||||| |
Sbjct 3431851 TTTCTCCCTTTAACGACTTGAGTTTCCCAACAATTTCCAGGTTGGTTTTAATAGGAAAAT 3431792
Query 160651 CGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAGGTCCCTCA 160710
| |||| || | ||||||| ||||||||| | || |||| || |||||| ||
Sbjct 3431791 CCATACCACAAAGATTTATCAAGTACTTCCAGTCTGCACTCATTCGGTAGAGGTCCTGCA 3431732
Query 160711 TGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTAGTTTAC 160770
| || || | ||| ||||| || || ||||| || |||||||| || |||| || | ||
Sbjct 3431731 TACAGTTGAGATCGGCCTGAACCCGACTCCACGATGCGTACACCACAGTCTCCAGCTGAC 3431672
Query 160771 TGGCCACAAAGACGTTATCGAAACACGACACGATTCC---CACCACCGCCAGAAAGAACA 160827
|||||||||||||||| |||||| || | || || ||| | |||| |||| | |
Sbjct 3431671 TGGCCACAAAGACGTTGCTGAAACAGGATGCAATGCCAAGTACCGCAGCCAAAAAGGA-A 3431613
Query 160828 TCTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATGGCCC 160887
|| || | ||| |||||| || | |||||| | ||||||||| ||||||||||
Sbjct 3431612 TC--CTCTGATTTTTTGTCCACATGAATGCAATAGAAATTCTGAGGCATATAGATGGCCC 3431555
Query 160888 TGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTATCGGAA 160947
| | | ||| || | ||| || || || ||||| | ||| || || || ||||| ||||
Sbjct 3431554 TCAAGAGCCTGTCAAGCATTTCAATTTTGTGATGAACCACTATGGAATATGCTATTGGAA 3431495
Query 160948 ACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGATAAAATAAT 161007
||| ||| || ||| |||| | | ||||| ||| ||||||| ||| ||
Sbjct 3431494 ACTTTTCCTCTTCTTTACTAAGGGGTTCTACAATATACTTGCGCTTCTTGATGAAAGAAG 3431435
Query 161008 CACAATCCCGCGTCATGTTGATATA 161032
|||||| | |||||||| |||||
Sbjct 3431434 TACAATCACTAGTCATGTTTATATA 3431410
>seq107
Length=5366022
Score = 152 bits (168), Expect = 6e-32
Identities = 225/319 (71%), Gaps = 0/319 (0%)
Strand=Plus/Plus
Query 168151 ATAGAGTCAAGCACGTTTTTCCAGAAATCTTGCCTGATCCGAACGTGTTGAAGAGGCACA 168210
||||||| | ||| | |||||| | | || || || || || || || ||||||||
Sbjct 5323578 ATAGAGTGAGGCAGGCTTTTCCGAAGACATTCCCAGAACCAAATGTATTAAAGAGGCATT 5323637
Query 168211 TGAAGCAGCCTTCGTCCTCCACGGTGGTATTCCAAAATGTTAGCGTTGAGTTTCGGAGGC 168270
| | || || || ||||||| |||||||||||| || || | |||||||| |||| |
Sbjct 5323638 GGTAACATCCCTCATCCTCCAGGGTGGTATTCCAGAAGGTAATGGTTGAGTTCTGGAGTC 5323697
Query 168271 CCAACTGCGTTATGTTCACACGATCTTTATAAGGAGGTTGAACTACAACGCCGTGGTTCT 168330
||| || || ||||| | || ||||| | || || || ||||| || ||| ||
Sbjct 5323698 CCAGCTCAGTGATGTTGATCTTGTCCTTATAGGCTGGCTGGACCACAACCCCATGGGACT 5323757
Query 168331 CGCTGAAGGTGGCCATGTTCTCCGGGCTGGTGGCCTTTATCTTCTGCCAGGTTACTATCA 168390
|||||||||| ||||||| || ||||| || ||||| || |||||||| || || | ||
Sbjct 5323758 TGCTGAAGGTGACCATGTTTTCTGGGCTAGTAGCCTTGATTTTCTGCCACGTCACAACCA 5323817
Query 168391 GAACCTCTTTATCGGTCTGCAGGGAACATCTCAGCGAAGCCGGAGTGTTCAGCAGTTCTC 168450
|| || || ||| || |||| | ||||| || ||||||||||| | |
Sbjct 5323818 AGACTTCCCGGGAAGTTCCCAGAGAGCATCGTAAGGAAGCAGGTGTGTTCAGCAGCTTTT 5323877
Query 168451 GCTCATCTTGAGTTACGAC 168469
||||||||||| || ||
Sbjct 5323878 TTTCATCTTGAGTCACCAC 5323896
>seq201
Length=2760491
Score = 107 bits (118), Expect = 2e-18
Identities = 140/194 (72%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 176232 AGATATTTTACTAGGTCACGTGGCGAGTCATAATCATTAACATGTATAAATGCGTGTGGT 176291
||||| ||| |||| |||| || |||| |||||| | ||||| || |||| | || |
Sbjct 2646442 AGATACTTTGCTAGCTCACTGGGAGAGTTATAATCTTCGACATGAATGAATGAATCTGCT 2646501
Query 176292 GGAATGTAGTTTTCATAATTTTGTCTGGAGGGTCCTAAAACTATTGGTACGGTACGTGCT 176351
||||| || |||||||| |||| ||| || || || | ||| | ||||| | | ||
Sbjct 2646502 GGAATATAATTTTCATAGTTTTCTCTAGATGGCCCCAGAACAACAGGTACAGAGCCAGCC 2646561
Query 176352 AATAATGAGCGGTAGATCTTTTCTGAGATGTAGTCAGTGTGAATTGAGTTTTCAAAAGCT 176411
| || | ||||| |||||||| |||||| || |||| |||||||||||||| |
Sbjct 2646562 AGAAAAGCATTGTAGAGCTTTTCTGTGATGTAATCTTTGTGGATTGAGTTTTCAAAGGAA 2646621
Query 176412 AAATAGAACTTACA 176425
| ||| || || ||
Sbjct 2646622 AGATAAAATTTGCA 2646635
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 576761472389640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |