Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04] 63,439 sequences; 2,073,344,508 total letters Query= NC_020837.1 Length=198013 Score E Sequences producing significant alignments: (Bits) Value seq14980 89.7 7e-13 >seq14980 Length=674 Score = 89.7 bits (98), Expect = 7e-13 Identities = 133/186 (72%), Gaps = 2/186 (1%) Strand=Plus/Minus Query 102824 GGGTATGCCACGCAGGTCAGAACAAAACCTG-CTTCTAGTTGATCGTCATCCAGAAAGGA 102882 ||||| ||||| || |||| ||| ||||| || | |||| ||| || || ||||| || Sbjct 399 GGGTAAGCCACACAAGTCAAGACATAACCTTTCTCCAAGTT-ATCATCCTCAAGAAACGA 341 Query 102883 TTGATCTTCTTGATCTACAGTACCCGATTCAATCTTACCAGCACAAGTAGAACACGCACC 102942 ||| || || || ||| | || |||||||| |||||||| ||||||||||| Sbjct 340 ACCATCAGACTGGTCAACTTCACCTGTCTCGATCTTACCCGCACAAGTGGAACACGCACC 281 Query 102943 AGCACGACAGGAATAAGGCAGATCAACACCTGCTTCATCAGCAGCGTCTAGAATATATTG 103002 || | || || ||||||| ||||| ||||| || ||||| || || | || || || Sbjct 280 GGCTCTGCAAGAGTAAGGCAAGTCAACTCCTGCCTCTTCAGCTGCATCCAATATGTACTG 221 Query 103003 ATCATC 103008 || || Sbjct 220 GTCGTC 215 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633011231634120