Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04] 63,439 sequences; 2,073,344,508 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq3704 176 5e-39 seq8508 152 6e-32 seq29832 105 8e-18 >seq3704 Length=2746 Score = 176 bits (194), Expect = 5e-39 Identities = 369/540 (68%), Gaps = 30/540 (6%) Strand=Plus/Minus Query 138161 AAATGGTGTGAGATGTTTTGCT--ACACCAATAGGACCTACGCCAGGACCTCCACCTCCA 138218 |||||||| | ||||| ||| ||||| || ||||| | || || || ||||||||| Sbjct 2577 AAATGGTGCTAAATGTT--GCTTCACACCGATGGGACCCATTCCTGGCCCACCACCTCCA 2520 Query 138219 TGTGGAATACAGAATGTCTTATGTAAATTTAGATGACATACATCTGCACCATAGTCACAT 138278 || ||||||||||| |||||||| | ||| ||||| || ||||| || ||| | || Sbjct 2519 TGAGGAATACAGAAGGTCTTATGGAGATTGAGATGGCACACATCCGCTCCAATGAAACCG 2460 Query 138279 GGTTTTGCTAGACCTACCTGTGCATTTAGATTTGCACCATCGAGATATACCTGACCACCA 138338 || | | | ||| ||||||||||| | || |||||||| | ||| || ||||| || Sbjct 2459 GGGCTCGTCAAACCAACCTGTGCATTCATGTTGGCACCATCCATATACACTTGACCTCCG 2400 Query 138339 TTGTCATGAACGATCTTACATATCT-GTCTGATGTTTGTTTCAAATACACCATGAGTCGA 138397 || || || | || || || |||| ||| || | |||| | || || ||||| || Sbjct 2399 TTTTCGTGTATTATGTTGCAAATCTCGTC-AATACCTTCTTCATAGACTCCGTGAGTTGA 2341 Query 138398 TGGATATGTAATCATAATACATGAGAGTTCAAATGTATTCATGATTGCTT-----TCTTC 138452 || ||||||| ||| | | | | | ||| || || | |||| ||| Sbjct 2340 AGGGTATGTAACCAT----GAGGGCGGCTAAGTTGTCTT--TGTTAGCTTCAGCAGCTTT 2287 Query 138453 TCT-AGATCTTTGATGTCTATGTTGCCATCATCATCACACTTGACACC--TACAACTTTC 138509 ||| | || | ||||| || || || | | ||| || || ||| | || |||| Sbjct 2286 TCTCACCTCCTCGATGTTGATATTTCCCTTAGCAT--CAGTTCCAACCGTAATAATTTTC 2229 Query 138510 ATTCCTGCCATGACTGCACTAGCAGGATTAGTTCCATGTGCTGACTCTGGTATCAGACAT 138569 ||||| ||| | || || ||||| || || |||||||| || | ||||| | ||| Sbjct 2228 ATTCCGCACATAGCAGCGCTTGCAGGGTTTGTCCCATGTGCAGAGACAGGTATGATACAC 2169 Query 138570 ACATTTCTTTTATCATCTCCTGATCCTTGA----TGATATGCTTGGATTGCTAACAGTCC 138625 |||||||| | || ||||||| ||||| |||||||| |||| | | || || Sbjct 2168 ACATTTCTGTGATGATCTCCT----CTTGACATGTGATATGCGCGGATAACCATAAGCCC 2113 Query 138626 TGCATACTCACCCTGTGATCCTGCGTTAGGTTGTAATGATATAGAATCAAAACCTGTGAT 138685 ||||||||||| | || || |||||||| ||||| | ||| ||||| || ||||| Sbjct 2112 GGCATACTCACCAGCAGCACCAGCATTAGGTTGCAATGAGAAAGAGTCAAACCCGGTGAT 2053 Score = 129 bits (142), Expect = 7e-25 Identities = 185/256 (72%), Gaps = 16/256 (6%) Strand=Plus/Minus Query 139272 CCATGATATGCTGCATAGAATCCAGACATATTTGCGAGCAGTGCTTGTGCTGTGCAGATG 139331 ||||| || | ||||| | ||| ||| || || |||| || || || || |||||| Sbjct 1439 CCATGGTAAACAGCATACATGGCAGCCATGTTGGCAAGCAACGCCTGAGCAGTACAGATG 1380 Query 139332 TTACTGGTTGCTTTGTCTCTTCTAATATGCTGCTCTCTAGTTTGTAGTGCTAATCTGTAT 139391 || || || |||||||| || ||||||||||| |||||||| || | || | || Sbjct 1379 TTGCTAGTGGCTTTGTCCCTCCTAATATGCTGTTCTCTAGTCTGCATCGCCA-----TAC 1325 Query 139392 GCAG-GATTGCCTTCGCTG-----TCCACTGACTGA--CCTACAATTCTGCCAGGTATCT 139443 |||| | |||| ||| ||| || || ||||| || | ||| || || || ||| Sbjct 1324 GCAGAGCTTGCTTTC-CTGAAGAATCGAC--ACTGATACCAATAATCCTCCCTGGCATCA 1268 Query 139444 TTCTCTTATACTTGTCTGTTGTTGCAAAGAATGCAGCATGAGGACCTCCGTATCCCATAG 139503 |||||||||||| | || || || ||||| |||||||| || || ||||| ||||| | Sbjct 1267 TTCTCTTATACTCTTGTGAAGTAGCCAAGAACGCAGCATGGGGGCCACCGTAACCCATTG 1208 Query 139504 GAATACCAAACCTTTG 139519 ||| ||||||||| || Sbjct 1207 GAACACCAAACCTCTG 1192 Score = 95.1 bits (104), Expect = 1e-14 Identities = 120/165 (73%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 139859 CATTGCCTCTGCTGCTGCAGTTGCTTCATCTAATAGAGATGCGTTTGCTATTGGTAATCC 139918 ||| ||||| || ||||| || |||| |||| || |||||||| | || || | ||| Sbjct 855 CATAGCCTCCGCAGCTGCGGTACCTTCGTCTAGCAGCGATGCGTTAGACATGGGAAGTCC 796 Query 139919 TGTAAGTTCTGTGATGAGCGTTTGGTAATTGAATAAAGCTTCCAATCTTCCCTGAGATAT 139978 || || || ||||| | ||| ||| |||||| | | || | | |||||||| || Sbjct 795 AGTGAGATCGGTGATCACCGTCTGGAAATTGAGGAGCGACTCGAGACGACCCTGAGAGAT 736 Query 139979 CTCAGCTTGATAGGGAGTGTAAGATGTGTACCAACTAGGATTCTC 140023 ||||||||| || |||||||| ||||||||| |||||||| Sbjct 735 CTCAGCTTGGTAAGGAGTGTACTGAGTGTACCAAGCCGGATTCTC 691 >seq8508 Length=1145 Score = 152 bits (168), Expect = 6e-32 Identities = 180/240 (75%), Gaps = 4/240 (2%) Strand=Plus/Plus Query 138178 TTGCT--ACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAATGT 138235 ||||| ||||||||||| || | |||||||| ||||||||||| || |||||||| || Sbjct 850 TTGCTTCACACCAATAGGGCCCATACCAGGACCACCACCTCCATGAGGGATACAGAAGGT 909 Query 138236 CTTATGTAAATTTAGATGACATACATCTGCACCATAGTCACATGGTTTTGCTAGACCTAC 138295 ||| || | ||| ||||| || ||||| || ||| || || ||| || ||| || Sbjct 910 CTTGTGAAGATTGAGATGGCAAACATCAGCTCCAATAAAACCAGGACTTGTTAAACCCAC 969 Query 138296 CTGTGCATTTAGATTTGCACCATCGAGATATACCTGACCACCATTGTCATGAACGATCTT 138355 ||||||||| | ||| |||||||| | ||| || || || |||||| |||||| || || Sbjct 970 CTGTGCATTCATATTAGCACCATCCATATAAACTTGGCCTCCATTGGCATGAATTATATT 1029 Query 138356 ACATATCT-GTCTGATGTTTGTTTCAAATACACCATGAGTCGATGGATATGTAATCATAA 138414 || |||| ||| || |||| | || |||||||| || |||||||||| ||||| Sbjct 1030 GCAGATCTCGTC-AATACCCTCTTCATAGACTCCATGAGTTGAAGGATATGTAACCATAA 1088 >seq29832 Length=347 Score = 105 bits (116), Expect = 8e-18 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 139859 CATTGCCTCTGCTGCTGCAGTTGCTTCATCTAATAGAGATGCGTTTGCTATTGGTAATCC 139918 ||| || ||||||||||| || ||||||| | | ||| ||||||| || || | || Sbjct 146 CATGGCTTCTGCTGCTGCTGTACCTTCATCGAGCAAAGAAGCGTTTGACATGGGGAGACC 87 Query 139919 TGTAAGTTCTGTGATGAGCGTTTGGTAATTGAATAAAGCTTCCAATCTTCCCTGAGATAT 139978 || || || ||||| | ||||||| |||||| || || || | |||||| || || || Sbjct 86 AGTGAGATCAGTGATCACCGTTTGGAAATTGAGTAGAGACTCGAGTCTTCCTTGTGAGAT 27 Query 139979 CTCAGCTTGATAGGGAGTGTA 139999 |||||||||||| |||||||| Sbjct 26 CTCAGCTTGATAAGGAGTGTA 6 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578539261506280