Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04]
63,439 sequences; 2,073,344,508 total letters
Query= NC_020845.1
Length=180977
Score E
Sequences producing significant alignments: (Bits) Value
seq3704 176 5e-39
seq8508 152 6e-32
seq29832 105 8e-18
>seq3704
Length=2746
Score = 176 bits (194), Expect = 5e-39
Identities = 369/540 (68%), Gaps = 30/540 (6%)
Strand=Plus/Minus
Query 138161 AAATGGTGTGAGATGTTTTGCT--ACACCAATAGGACCTACGCCAGGACCTCCACCTCCA 138218
|||||||| | ||||| ||| ||||| || ||||| | || || || |||||||||
Sbjct 2577 AAATGGTGCTAAATGTT--GCTTCACACCGATGGGACCCATTCCTGGCCCACCACCTCCA 2520
Query 138219 TGTGGAATACAGAATGTCTTATGTAAATTTAGATGACATACATCTGCACCATAGTCACAT 138278
|| ||||||||||| |||||||| | ||| ||||| || ||||| || ||| | ||
Sbjct 2519 TGAGGAATACAGAAGGTCTTATGGAGATTGAGATGGCACACATCCGCTCCAATGAAACCG 2460
Query 138279 GGTTTTGCTAGACCTACCTGTGCATTTAGATTTGCACCATCGAGATATACCTGACCACCA 138338
|| | | | ||| ||||||||||| | || |||||||| | ||| || ||||| ||
Sbjct 2459 GGGCTCGTCAAACCAACCTGTGCATTCATGTTGGCACCATCCATATACACTTGACCTCCG 2400
Query 138339 TTGTCATGAACGATCTTACATATCT-GTCTGATGTTTGTTTCAAATACACCATGAGTCGA 138397
|| || || | || || || |||| ||| || | |||| | || || ||||| ||
Sbjct 2399 TTTTCGTGTATTATGTTGCAAATCTCGTC-AATACCTTCTTCATAGACTCCGTGAGTTGA 2341
Query 138398 TGGATATGTAATCATAATACATGAGAGTTCAAATGTATTCATGATTGCTT-----TCTTC 138452
|| ||||||| ||| | | | | | ||| || || | |||| |||
Sbjct 2340 AGGGTATGTAACCAT----GAGGGCGGCTAAGTTGTCTT--TGTTAGCTTCAGCAGCTTT 2287
Query 138453 TCT-AGATCTTTGATGTCTATGTTGCCATCATCATCACACTTGACACC--TACAACTTTC 138509
||| | || | ||||| || || || | | ||| || || ||| | || ||||
Sbjct 2286 TCTCACCTCCTCGATGTTGATATTTCCCTTAGCAT--CAGTTCCAACCGTAATAATTTTC 2229
Query 138510 ATTCCTGCCATGACTGCACTAGCAGGATTAGTTCCATGTGCTGACTCTGGTATCAGACAT 138569
||||| ||| | || || ||||| || || |||||||| || | ||||| | |||
Sbjct 2228 ATTCCGCACATAGCAGCGCTTGCAGGGTTTGTCCCATGTGCAGAGACAGGTATGATACAC 2169
Query 138570 ACATTTCTTTTATCATCTCCTGATCCTTGA----TGATATGCTTGGATTGCTAACAGTCC 138625
|||||||| | || ||||||| ||||| |||||||| |||| | | || ||
Sbjct 2168 ACATTTCTGTGATGATCTCCT----CTTGACATGTGATATGCGCGGATAACCATAAGCCC 2113
Query 138626 TGCATACTCACCCTGTGATCCTGCGTTAGGTTGTAATGATATAGAATCAAAACCTGTGAT 138685
||||||||||| | || || |||||||| ||||| | ||| ||||| || |||||
Sbjct 2112 GGCATACTCACCAGCAGCACCAGCATTAGGTTGCAATGAGAAAGAGTCAAACCCGGTGAT 2053
Score = 129 bits (142), Expect = 7e-25
Identities = 185/256 (72%), Gaps = 16/256 (6%)
Strand=Plus/Minus
Query 139272 CCATGATATGCTGCATAGAATCCAGACATATTTGCGAGCAGTGCTTGTGCTGTGCAGATG 139331
||||| || | ||||| | ||| ||| || || |||| || || || || ||||||
Sbjct 1439 CCATGGTAAACAGCATACATGGCAGCCATGTTGGCAAGCAACGCCTGAGCAGTACAGATG 1380
Query 139332 TTACTGGTTGCTTTGTCTCTTCTAATATGCTGCTCTCTAGTTTGTAGTGCTAATCTGTAT 139391
|| || || |||||||| || ||||||||||| |||||||| || | || | ||
Sbjct 1379 TTGCTAGTGGCTTTGTCCCTCCTAATATGCTGTTCTCTAGTCTGCATCGCCA-----TAC 1325
Query 139392 GCAG-GATTGCCTTCGCTG-----TCCACTGACTGA--CCTACAATTCTGCCAGGTATCT 139443
|||| | |||| ||| ||| || || ||||| || | ||| || || || |||
Sbjct 1324 GCAGAGCTTGCTTTC-CTGAAGAATCGAC--ACTGATACCAATAATCCTCCCTGGCATCA 1268
Query 139444 TTCTCTTATACTTGTCTGTTGTTGCAAAGAATGCAGCATGAGGACCTCCGTATCCCATAG 139503
|||||||||||| | || || || ||||| |||||||| || || ||||| ||||| |
Sbjct 1267 TTCTCTTATACTCTTGTGAAGTAGCCAAGAACGCAGCATGGGGGCCACCGTAACCCATTG 1208
Query 139504 GAATACCAAACCTTTG 139519
||| ||||||||| ||
Sbjct 1207 GAACACCAAACCTCTG 1192
Score = 95.1 bits (104), Expect = 1e-14
Identities = 120/165 (73%), Gaps = 0/165 (0%)
Strand=Plus/Minus
Query 139859 CATTGCCTCTGCTGCTGCAGTTGCTTCATCTAATAGAGATGCGTTTGCTATTGGTAATCC 139918
||| ||||| || ||||| || |||| |||| || |||||||| | || || | |||
Sbjct 855 CATAGCCTCCGCAGCTGCGGTACCTTCGTCTAGCAGCGATGCGTTAGACATGGGAAGTCC 796
Query 139919 TGTAAGTTCTGTGATGAGCGTTTGGTAATTGAATAAAGCTTCCAATCTTCCCTGAGATAT 139978
|| || || ||||| | ||| ||| |||||| | | || | | |||||||| ||
Sbjct 795 AGTGAGATCGGTGATCACCGTCTGGAAATTGAGGAGCGACTCGAGACGACCCTGAGAGAT 736
Query 139979 CTCAGCTTGATAGGGAGTGTAAGATGTGTACCAACTAGGATTCTC 140023
||||||||| || |||||||| ||||||||| ||||||||
Sbjct 735 CTCAGCTTGGTAAGGAGTGTACTGAGTGTACCAAGCCGGATTCTC 691
>seq8508
Length=1145
Score = 152 bits (168), Expect = 6e-32
Identities = 180/240 (75%), Gaps = 4/240 (2%)
Strand=Plus/Plus
Query 138178 TTGCT--ACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAATGT 138235
||||| ||||||||||| || | |||||||| ||||||||||| || |||||||| ||
Sbjct 850 TTGCTTCACACCAATAGGGCCCATACCAGGACCACCACCTCCATGAGGGATACAGAAGGT 909
Query 138236 CTTATGTAAATTTAGATGACATACATCTGCACCATAGTCACATGGTTTTGCTAGACCTAC 138295
||| || | ||| ||||| || ||||| || ||| || || ||| || ||| ||
Sbjct 910 CTTGTGAAGATTGAGATGGCAAACATCAGCTCCAATAAAACCAGGACTTGTTAAACCCAC 969
Query 138296 CTGTGCATTTAGATTTGCACCATCGAGATATACCTGACCACCATTGTCATGAACGATCTT 138355
||||||||| | ||| |||||||| | ||| || || || |||||| |||||| || ||
Sbjct 970 CTGTGCATTCATATTAGCACCATCCATATAAACTTGGCCTCCATTGGCATGAATTATATT 1029
Query 138356 ACATATCT-GTCTGATGTTTGTTTCAAATACACCATGAGTCGATGGATATGTAATCATAA 138414
|| |||| ||| || |||| | || |||||||| || |||||||||| |||||
Sbjct 1030 GCAGATCTCGTC-AATACCCTCTTCATAGACTCCATGAGTTGAAGGATATGTAACCATAA 1088
>seq29832
Length=347
Score = 105 bits (116), Expect = 8e-18
Identities = 108/141 (77%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 139859 CATTGCCTCTGCTGCTGCAGTTGCTTCATCTAATAGAGATGCGTTTGCTATTGGTAATCC 139918
||| || ||||||||||| || ||||||| | | ||| ||||||| || || | ||
Sbjct 146 CATGGCTTCTGCTGCTGCTGTACCTTCATCGAGCAAAGAAGCGTTTGACATGGGGAGACC 87
Query 139919 TGTAAGTTCTGTGATGAGCGTTTGGTAATTGAATAAAGCTTCCAATCTTCCCTGAGATAT 139978
|| || || ||||| | ||||||| |||||| || || || | |||||| || || ||
Sbjct 86 AGTGAGATCAGTGATCACCGTTTGGAAATTGAGTAGAGACTCGAGTCTTCCTTGTGAGAT 27
Query 139979 CTCAGCTTGATAGGGAGTGTA 139999
|||||||||||| ||||||||
Sbjct 26 CTCAGCTTGATAAGGAGTGTA 6
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 578539261506280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |