Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04] 63,439 sequences; 2,073,344,508 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq8305 86.0 7e-12 seq8090 86.0 7e-12 >seq8305 Length=1166 Score = 86.0 bits (94), Expect = 7e-12 Identities = 95/125 (76%), Gaps = 4/125 (3%) Strand=Plus/Minus Query 175468 CCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGGT--G 175525 || |||||||| || || |||||||||||||| || || | |||| | | || ||| | Sbjct 1151 CCTTGTATTGTTTTTATAGATGAGATTGATGCTGTTGGTAGGCAAAGAGGAGCAGGTATG 1092 Query 175526 GTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATG 175585 | | | | |||||| ||||| ||||| || |||||||| || | || |||||||||| Sbjct 1091 GGAGGT--GGAAATGATGAGAGGGAACAGACGATTAATCAGCTTTTAACGGAGATGGATG 1034 Query 175586 GCTTT 175590 ||||| Sbjct 1033 GCTTT 1029 >seq8090 Length=1192 Score = 86.0 bits (94), Expect = 7e-12 Identities = 171/252 (68%), Gaps = 6/252 (2%) Strand=Plus/Plus Query 175431 GGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGATGA 175490 ||| || ||||| || ||| ||| |||||| || || ||||| || | ||||| Sbjct 1 GGTCCGTGATCTTTTCAAAAAAGCCAAGGAAAATGCTCCTTGCATTGTTTTTGTGGATGA 60 Query 175491 GATTGATGCGGTGGGCAAGCAACGCAGCGCTGG---TGGTATGCCAGCAAATGACGAGAG 175547 || ||||| || |||| |||| | | | || |||| || ||||| || || Sbjct 61 AATAGATGCTGTTGGCAGGCAAAGAGGAACCGGAATTGGTGG---AGGTAATGATGAAAG 117 Query 175548 AGAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTGACAATGAGACTGGCAT 175607 |||||| || ||||||| || || || ||||||||||| ||||| | | ||||| | Sbjct 118 AGAACAGACGCTTAATCAGCTGCTGACGGAGATGGATGGTTTTGAGGGTAACACTGGTGT 177 Query 175608 TGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGATGACGCCCTCCTTCGCCCGGG 175667 | | || |||| || || || | | ||||| ||||| |||| | || | || || Sbjct 178 TATCGTAGTTGCTGCTACCAACAGAGCAGATATTCTTGACTCCGCCTTGCTGAGACCAGG 237 Query 175668 TCGTTTTGATCG 175679 |||||||| || Sbjct 238 GCGTTTTGACCG 249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596096527764320