Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04]
63,439 sequences; 2,073,344,508 total letters
Query= NC_020852.1
Length=186468
Score E
Sequences producing significant alignments: (Bits) Value
seq8305 86.0 7e-12
seq8090 86.0 7e-12
>seq8305
Length=1166
Score = 86.0 bits (94), Expect = 7e-12
Identities = 95/125 (76%), Gaps = 4/125 (3%)
Strand=Plus/Minus
Query 175468 CCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGGT--G 175525
|| |||||||| || || |||||||||||||| || || | |||| | | || ||| |
Sbjct 1151 CCTTGTATTGTTTTTATAGATGAGATTGATGCTGTTGGTAGGCAAAGAGGAGCAGGTATG 1092
Query 175526 GTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATG 175585
| | | | |||||| ||||| ||||| || |||||||| || | || ||||||||||
Sbjct 1091 GGAGGT--GGAAATGATGAGAGGGAACAGACGATTAATCAGCTTTTAACGGAGATGGATG 1034
Query 175586 GCTTT 175590
|||||
Sbjct 1033 GCTTT 1029
>seq8090
Length=1192
Score = 86.0 bits (94), Expect = 7e-12
Identities = 171/252 (68%), Gaps = 6/252 (2%)
Strand=Plus/Plus
Query 175431 GGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGATGA 175490
||| || ||||| || ||| ||| |||||| || || ||||| || | |||||
Sbjct 1 GGTCCGTGATCTTTTCAAAAAAGCCAAGGAAAATGCTCCTTGCATTGTTTTTGTGGATGA 60
Query 175491 GATTGATGCGGTGGGCAAGCAACGCAGCGCTGG---TGGTATGCCAGCAAATGACGAGAG 175547
|| ||||| || |||| |||| | | | || |||| || ||||| || ||
Sbjct 61 AATAGATGCTGTTGGCAGGCAAAGAGGAACCGGAATTGGTGG---AGGTAATGATGAAAG 117
Query 175548 AGAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTGACAATGAGACTGGCAT 175607
|||||| || ||||||| || || || ||||||||||| ||||| | | ||||| |
Sbjct 118 AGAACAGACGCTTAATCAGCTGCTGACGGAGATGGATGGTTTTGAGGGTAACACTGGTGT 177
Query 175608 TGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGATGACGCCCTCCTTCGCCCGGG 175667
| | || |||| || || || | | ||||| ||||| |||| | || | || ||
Sbjct 178 TATCGTAGTTGCTGCTACCAACAGAGCAGATATTCTTGACTCCGCCTTGCTGAGACCAGG 237
Query 175668 TCGTTTTGATCG 175679
|||||||| ||
Sbjct 238 GCGTTTTGACCG 249
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 596096527764320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |