Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04] 63,439 sequences; 2,073,344,508 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq19370 100 5e-16 seq29432 98.7 2e-15 seq189 91.5 3e-13 seq188 86.0 1e-11 seq142 86.0 1e-11 seq69 84.2 4e-11 >seq19370 Length=533 Score = 100 bits (110), Expect = 5e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 ||||| || || | | || || || |||| ||||| ||||| |||||| |||||| Sbjct 215 ATACCTCCCCTAAGCCTCAGCACAAGGTGCAGTGTAGATTCTTTTTGAATATTGTAGTCG 156 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | || || | ||| || | ||||||||||| || || || ||||| ||||| ||| Sbjct 155 GCCAAGGTACGGCCATCCTCGAGCTGTTTTCCGGCGAAGATCAACCTCTGCTGATCCGGA 96 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||| || ||||| ||||||| || | ||| || || ||| ||| Sbjct 95 GGGATGCCTTCCTTGTCTTGAATTTTGGCCTTGACATTGTCGATGGTGTCGCTGCTCTCG 36 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTT 193345 || || ||||| || || || || ||||| ||||| Sbjct 35 ACCTCGAGAGTGATGGTCTTGCCGGTTAGGGTTTT 1 >seq29432 Length=351 Score = 98.7 bits (108), Expect = 2e-15 Identities = 111/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274 |||||||| || || || |||| ||| ||||| ||||| ||||||||||| ||||| || Sbjct 193 TGTTTTCCAGCGAAGATCAATCGCTGCTGATCCGGAGGGATTCCTTCTTTGTCTTGGATC 252 Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334 |||| || | ||| || || || || ||||| || || || || || || || || Sbjct 253 TTGGCCTTGACATTGTCGATGGTGTCAGAGGACTCGACCTCGAGGGTGATGGTCTTGCCG 312 Query 193335 GTTAGCGTTTTTACAAATATTTGCATTTT 193363 ||||| ||||| || || || ||||| || Sbjct 313 GTTAGGGTTTTCACGAAGATCTGCATCTT 341 >seq189 Length=4153236 Score = 91.5 bits (100), Expect = 3e-13 Identities = 148/212 (70%), Gaps = 1/212 (0%) Strand=Plus/Minus Query 193152 ACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCT 193211 || ||||| | || | ||| || |||| || ||||| || || || | ||| || Sbjct 1285424 ACAAGATGAAGAGTGGACTCCTTTTAAATGTTGTAGTCAGACAAGGTACATCCATCTTCC 1285365 Query 193212 AATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGT 193271 | ||| || || ||||| | | ||| || ||||||||||| |||||||| ||||| || Sbjct 1285364 AGTTGCTTGCCAGCAAAG-TCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGG 1285306 Query 193272 ATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTA 193331 || |||| ||||| |||| | ||||| || | ||||| || |||| || || || Sbjct 1285305 ATCTTGGCTTTTACATTTTCTCTTGTATCTGAGGGTTCAACCTCAAGAGGGATGGTCTTC 1285246 Query 193332 CCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 || || || |||| | || || ||||| || Sbjct 1285245 CCAGTAAGGGTTTCCATGAAAATCTGCATCTT 1285214 >seq188 Length=3215107 Score = 86.0 bits (94), Expect = 1e-11 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 |||||||| | || |||| ||| |||| || | |||||| ||||||||||| Sbjct 2830973 ATACCACCCCGCAGATGAAGCACCGAGTGCAGAGTGGACTCTTTCTGGATATTATAGTCT 2830914 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || | || | ||| || | ||||| || |||||||| | | ||| || ||||| Sbjct 2830913 GAGAGAGTGCGGCCATCCTCCAGCTGTTTGCCCGCAAAAATCAGACGCTGCTGGTCAGGT 2830854 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || || || || | ||| ||||| | ||| | ||| |||||| || | || Sbjct 2830853 GGGATGCCCTCCTTGTTTTGGATTTTAGCTTTGACATTCTCAATAGTGTCATTGGGCTTG 2830794 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || || || || |||||||| || || ||||| || ||||| Sbjct 2830793 ACCTCAAGTGTGATGGTCTTGCCTGTTAGGGTCTTCACAAAGATCTGCAT 2830744 >seq142 Length=3748655 Score = 86.0 bits (94), Expect = 1e-11 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 193218 TTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTG 193277 || || ||||| | | ||| |||| ||||||||| |||||||||||||| || | ||| Sbjct 2343103 TTGCCAGCAAAGCTCAGTCTTTGTTAATCAGGAGGAATTCCTTCTTTATCCTGGGTCTTG 2343044 Query 193278 GTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTT 193337 || |||| |||| || ||||| | | ||||| || ||||| || | ||| | || Sbjct 2343043 GTCTTTACATTTTCTATTGTATCCAAGGGTTCAACCTCAAGAGTGATGGATTTCCAAGTA 2342984 Query 193338 AGCGTTTTTACAAATATTTGCATTTTA 193364 || ||||| || || || || || ||| Sbjct 2342983 AGGGTTTTCACGAAAATCTGTATCTTA 2342957 >seq69 Length=3989787 Score = 84.2 bits (92), Expect = 4e-11 Identities = 110/151 (73%), Gaps = 1/151 (1%) Strand=Plus/Minus Query 193214 TTGTTTTCCGGCAAAAATTAATCTCT-GTTGATCAGGAGGTATTCCTTCTTTATCTTGTA 193272 ||| || || ||||| || | ||| | | |||||||||| |||||||||||||| || | Sbjct 665434 TTGCTTGCCAGCAAAGATCAGTCTTTTGCTGATCAGGAGAAATTCCTTCTTTATCCTGGA 665375 Query 193273 TTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTAC 193332 | | || |||| |||| || ||||| || | ||||| || || || || || || | Sbjct 665374 TCTGGGCCTTTACATTTTCTATTGTATCCGAGGGTTCAACCTCAAGGGTGATGGTCTTCC 665315 Query 193333 CTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 | || || ||||| || || || ||||| || Sbjct 665314 CAGTAAGAGTTTTCACGAAAATCTGCATCTT 665284 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 898940985306480