Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04]
63,439 sequences; 2,073,344,508 total letters
Query= NC_021246.1
Length=281182
Score E
Sequences producing significant alignments: (Bits) Value
seq19370 100 5e-16
seq29432 98.7 2e-15
seq189 91.5 3e-13
seq188 86.0 1e-11
seq142 86.0 1e-11
seq69 84.2 4e-11
>seq19370
Length=533
Score = 100 bits (110), Expect = 5e-16
Identities = 151/215 (70%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190
||||| || || | | || || || |||| ||||| ||||| |||||| ||||||
Sbjct 215 ATACCTCCCCTAAGCCTCAGCACAAGGTGCAGTGTAGATTCTTTTTGAATATTGTAGTCG 156
Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250
| || || | ||| || | ||||||||||| || || || ||||| ||||| |||
Sbjct 155 GCCAAGGTACGGCCATCCTCGAGCTGTTTTCCGGCGAAGATCAACCTCTGCTGATCCGGA 96
Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310
|| || ||||| || ||||| ||||||| || | ||| || || ||| |||
Sbjct 95 GGGATGCCTTCCTTGTCTTGAATTTTGGCCTTGACATTGTCGATGGTGTCGCTGCTCTCG 36
Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTT 193345
|| || ||||| || || || || ||||| |||||
Sbjct 35 ACCTCGAGAGTGATGGTCTTGCCGGTTAGGGTTTT 1
>seq29432
Length=351
Score = 98.7 bits (108), Expect = 2e-15
Identities = 111/149 (74%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274
|||||||| || || || |||| ||| ||||| ||||| ||||||||||| ||||| ||
Sbjct 193 TGTTTTCCAGCGAAGATCAATCGCTGCTGATCCGGAGGGATTCCTTCTTTGTCTTGGATC 252
Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334
|||| || | ||| || || || || ||||| || || || || || || || ||
Sbjct 253 TTGGCCTTGACATTGTCGATGGTGTCAGAGGACTCGACCTCGAGGGTGATGGTCTTGCCG 312
Query 193335 GTTAGCGTTTTTACAAATATTTGCATTTT 193363
||||| ||||| || || || ||||| ||
Sbjct 313 GTTAGGGTTTTCACGAAGATCTGCATCTT 341
>seq189
Length=4153236
Score = 91.5 bits (100), Expect = 3e-13
Identities = 148/212 (70%), Gaps = 1/212 (0%)
Strand=Plus/Minus
Query 193152 ACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCT 193211
|| ||||| | || | ||| || |||| || ||||| || || || | ||| ||
Sbjct 1285424 ACAAGATGAAGAGTGGACTCCTTTTAAATGTTGTAGTCAGACAAGGTACATCCATCTTCC 1285365
Query 193212 AATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGT 193271
| ||| || || ||||| | | ||| || ||||||||||| |||||||| ||||| ||
Sbjct 1285364 AGTTGCTTGCCAGCAAAG-TCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGG 1285306
Query 193272 ATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTA 193331
|| |||| ||||| |||| | ||||| || | ||||| || |||| || || ||
Sbjct 1285305 ATCTTGGCTTTTACATTTTCTCTTGTATCTGAGGGTTCAACCTCAAGAGGGATGGTCTTC 1285246
Query 193332 CCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363
|| || || |||| | || || ||||| ||
Sbjct 1285245 CCAGTAAGGGTTTCCATGAAAATCTGCATCTT 1285214
>seq188
Length=3215107
Score = 86.0 bits (94), Expect = 1e-11
Identities = 157/230 (68%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190
|||||||| | || |||| ||| |||| || | |||||| |||||||||||
Sbjct 2830973 ATACCACCCCGCAGATGAAGCACCGAGTGCAGAGTGGACTCTTTCTGGATATTATAGTCT 2830914
Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250
|| | || | ||| || | ||||| || |||||||| | | ||| || |||||
Sbjct 2830913 GAGAGAGTGCGGCCATCCTCCAGCTGTTTGCCCGCAAAAATCAGACGCTGCTGGTCAGGT 2830854
Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310
|| || || || || | ||| ||||| | ||| | ||| |||||| || | ||
Sbjct 2830853 GGGATGCCCTCCTTGTTTTGGATTTTAGCTTTGACATTCTCAATAGTGTCATTGGGCTTG 2830794
Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
|| || || || || || || |||||||| || || ||||| || |||||
Sbjct 2830793 ACCTCAAGTGTGATGGTCTTGCCTGTTAGGGTCTTCACAAAGATCTGCAT 2830744
>seq142
Length=3748655
Score = 86.0 bits (94), Expect = 1e-11
Identities = 107/147 (73%), Gaps = 0/147 (0%)
Strand=Plus/Minus
Query 193218 TTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTG 193277
|| || ||||| | | ||| |||| ||||||||| |||||||||||||| || | |||
Sbjct 2343103 TTGCCAGCAAAGCTCAGTCTTTGTTAATCAGGAGGAATTCCTTCTTTATCCTGGGTCTTG 2343044
Query 193278 GTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTT 193337
|| |||| |||| || ||||| | | ||||| || ||||| || | ||| | ||
Sbjct 2343043 GTCTTTACATTTTCTATTGTATCCAAGGGTTCAACCTCAAGAGTGATGGATTTCCAAGTA 2342984
Query 193338 AGCGTTTTTACAAATATTTGCATTTTA 193364
|| ||||| || || || || || |||
Sbjct 2342983 AGGGTTTTCACGAAAATCTGTATCTTA 2342957
>seq69
Length=3989787
Score = 84.2 bits (92), Expect = 4e-11
Identities = 110/151 (73%), Gaps = 1/151 (1%)
Strand=Plus/Minus
Query 193214 TTGTTTTCCGGCAAAAATTAATCTCT-GTTGATCAGGAGGTATTCCTTCTTTATCTTGTA 193272
||| || || ||||| || | ||| | | |||||||||| |||||||||||||| || |
Sbjct 665434 TTGCTTGCCAGCAAAGATCAGTCTTTTGCTGATCAGGAGAAATTCCTTCTTTATCCTGGA 665375
Query 193273 TTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTAC 193332
| | || |||| |||| || ||||| || | ||||| || || || || || || |
Sbjct 665374 TCTGGGCCTTTACATTTTCTATTGTATCCGAGGGTTCAACCTCAAGGGTGATGGTCTTCC 665315
Query 193333 CTGTTAGCGTTTTTACAAATATTTGCATTTT 193363
| || || ||||| || || || ||||| ||
Sbjct 665314 CAGTAAGAGTTTTCACGAAAATCTGCATCTT 665284
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 898940985306480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |