Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04] 63,439 sequences; 2,073,344,508 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq73 100 6e-16 seq29432 98.7 2e-15 seq142 95.1 2e-14 seq77 95.1 2e-14 seq69 93.3 8e-14 seq19201 91.5 3e-13 seq17446 91.5 3e-13 seq671 89.7 1e-12 seq636 87.8 4e-12 >seq73 Length=6645612 Score = 100 bits (110), Expect = 6e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 192322 CGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGTTCA 192381 || || || | ||| | ||| | ||| || | || || | | ||| || || ||| || Sbjct 5748475 CGCAACACAAGATGAAGAGTGGACTCCTTTGGAATGTTGCAGTTAGACAAAGTGCGTCCA 5748416 Query 192382 TCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTA 192441 | |||| ||| || |||| |||| ||| ||| || ||| |||| || |||||||||||| Sbjct 5748415 GCTTCCAGTTGCTTGCCAGAAAAGCTTAGTCTTTGCTGAACAGGAGGAATTCCTTCTTTA 5748356 Query 192442 TCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATG 192501 || || || || |||||||| | | ||| | | ||| || || |||||||| Sbjct 5748355 TCCTGGATCTTGGCCTTTACATTGTCCACTGTATCCAAGGGTTCAACCTCGAGAGTAATA 5748296 Query 192502 GTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 ||||| ||||| | ||| | || || |||||||| || Sbjct 5748295 GTTTTCCCAGTAAGAGTTCTCATGAAAATCTGCATCTT 5748258 >seq29432 Length=351 Score = 98.7 bits (108), Expect = 2e-15 Identities = 164/237 (69%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 192303 AATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATA 192362 ||| ||||| ||||| || | || || | ||| | || | ||||| ||| || || Sbjct 105 AATGATACCTCCTCTGAGCCTCAACACAAGATGAAGCGTGGATTCTTTCTGGATGTTGTA 164 Query 192363 ATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATC 192422 |||| || || || | || || | ||||| ||||| ||||| |||| ||| ||||| Sbjct 165 GTCAGCCAAAGTACGCCCGTCTTCGAGCTGTTTTCCAGCGAAGATCAATCGCTGCTGATC 224 Query 192423 AGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGA 192482 || || ||||||||||| ||||| || || || ||||| || | || || || Sbjct 225 CGGAGGGATTCCTTCTTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTGTCAGAGGA 284 Query 192483 TTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 || || || || || ||||| || || |||| ||||| | || |||||||| || Sbjct 285 CTCGACCTCGAGGGTGATGGTCTTGCCGGTTAGGGTTTTCACGAAGATCTGCATCTT 341 >seq142 Length=3748655 Score = 95.1 bits (104), Expect = 2e-14 Identities = 163/233 (70%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAG 192367 |||||| ||| | || || | ||| | ||| | ||| ||| || || || || |||| Sbjct 2343186 ACCACCATGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGA-ATGTTGTAGTCAG 2343128 Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427 | || || ||| ||| || || || ||||||||| | | ||| |||| |||||| | Sbjct 2343127 ACAAAGTACGTCTATCTTCG--TTTCTTGCCAGCAAAGCTCAGTCTTTGTTAATCAGGAG 2343070 Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487 | |||||||||||||| || | || | |||||||| ||| | ||| | | ||| | Sbjct 2343069 GAATTCCTTCTTTATCCTGGGTCTTGGTCTTTACATTTTCTATTGTATCCAAGGGTTCAA 2343010 Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTTA 192540 | || ||||| |||| ||| | ||| | ||||| | || ||||| || ||| Sbjct 2343009 CCTCAAGAGTGATGGATTTCCAAGTAAGGGTTTTCACGAAAATCTGTATCTTA 2342957 >seq77 Length=5608019 Score = 95.1 bits (104), Expect = 2e-14 Identities = 138/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 192291 ACTTTTTAGTTTAATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTT 192350 |||| || ||| || |||||| ||| | || || | ||| | ||| | ||| || Sbjct 2407028 ACTTCTTCCTTTCTTAGCACCACCATGAAGTCTCAACACAAGATGAAGAGTGGTCTCCTT 2407087 Query 192351 AGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAA 192410 | || || || ||||| || || ||| || | |||| ||| || ||||||||||| | Sbjct 2407088 TGGAATGTTGTAGTCAGACAAAGTGCGTCCAGCTTCCAGTTGCTTGCCAGCAAAGATCAG 2407147 Query 192411 TCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTAT 192470 | | || |||||||| || |||||||| ||||| || || | |||||||| |||| Sbjct 2407148 TTTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCATGGCCTTTACATTTTTTAT 2407207 Query 192471 AGAATCTGACGATTC 192485 |||||||| | ||| Sbjct 2407208 TGAATCTGAGGGTTC 2407222 >seq69 Length=3989787 Score = 93.3 bits (102), Expect = 8e-14 Identities = 127/176 (72%), Gaps = 1/176 (1%) Strand=Plus/Minus Query 192365 CAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCT-GTTGATCA 192423 |||| | || ||| || | |||| ||| || ||||||||||| | ||| | | |||||| Sbjct 665459 CAGACACAGTGCGTCCAGCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTTGCTGATCA 665400 Query 192424 GGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGAT 192483 || | |||||||||||||| || || | |||||||| ||| | ||| || | | Sbjct 665399 GGAGAAATTCCTTCTTTATCCTGGATCTGGGCCTTTACATTTTCTATTGTATCCGAGGGT 665340 Query 192484 TCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 || || || || || ||||| || ||||| | ||||| | || |||||||| || Sbjct 665339 TCAACCTCAAGGGTGATGGTCTTCCCAGTAAGAGTTTTCACGAAAATCTGCATCTT 665284 >seq19201 Length=536 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 || ||||| ||||| | || || || | || | ||| || ||| || ||||| | Sbjct 279 CCTCCTCTCAGACGGAGAACCAAGTGAAGCGTCGACTCCTTCTGGATGTTGTAATCCGCG 338 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 | ||| | | | || |||| || || || || || || | | ||| ||||| ||||| Sbjct 339 AGTGTCCTTCCGTCTTCCAGCTGCTTCCCCGCGAATATCAGCCGCTGCTGATCCGGTGGG 398 Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACT 192489 |||||||| || || || || || || ||||| || | || |||||||| || Sbjct 399 ATTCCTTCCTTGTCCTGGATCTTCGCCTTCACATTGTCGATCGTGTCGGACGATTCAACC 458 Query 192490 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 ||||| || || || || || |||| ||||| | ||| ||||||||||| Sbjct 459 TCTAGGGTTATCGTCTTCCCCGTTAGGGTTTTCACAAAGATCTGCATTTT 508 >seq17446 Length=585 Score = 91.5 bits (100), Expect = 3e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 |||||||| || | || || | || | ||||| |||||| || || ||||| | | Sbjct 148 CCACCTCTGAGCCTCAAGACGAGGTGAAGAGTAGACTCTTTCTGAATGTTGTAATCCGCT 89 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 | ||||| |||| |||| ||| || || ||||| || | ||||||||||| |||||| Sbjct 88 AGGGTTCGGCCATCTTCCAGTTGCTTTCCGGCAAATATCAGCCTCTGTTGATCTGGTGGT 29 Query 192430 ATTCCTTCTTTATCTTGTATTTT 192452 || |||||||| || || ||||| Sbjct 28 ATACCTTCTTTGTCCTGGATTTT 6 >seq671 Length=818080 Score = 89.7 bits (98), Expect = 1e-12 Identities = 163/236 (69%), Gaps = 2/236 (1%) Strand=Plus/Minus Query 192305 TAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAA 192363 ||| |||| | | ||| | || || | ||| | ||| | ||| ||| || || || || Sbjct 168647 TAACACCATCACGAAGTCTCAACACCAGATGAAGAGTGGACTCCTTTTGA-ATGTTGTAG 168589 Query 192364 TCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCA 192423 ||||| || || | | ||| |||| || || ||||||||||| | ||| || ||| || Sbjct 168588 TCAGACAAAGTACATCAATCTTCCAGCTGCTTGCCAGCAAAGATCAGTCTTTGCTGAGCA 168529 Query 192424 GGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGAT 192483 || || |||||||| ||||| || | || |||| ||| ||| | | | || | | Sbjct 168528 GGAGGAATTCCTTCCTTATCCTGGGTCTTGGCCTTTATATTTTCTATTGTACCCGAGGGT 168469 Query 192484 TCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 || || || || || ||||| || ||||| | ||||| | || | |||||| || Sbjct 168468 TCAACCTCAAGGGTGATGGTCTTCCCAGTAAGGGTTTTCACGAAAAGCTGCATCTT 168413 >seq636 Length=882662 Score = 87.8 bits (96), Expect = 4e-12 Identities = 158/231 (68%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 |||| | ||||| | || || | ||| | ||| | |||||| || || || ||| | Sbjct 752553 ACCATCACTAAGTCTCAACACAAGATGAAGAGTTGACTCTTTTTGAATGTTGTAGTCAAA 752612 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 || | | | || |||| || || ||||||||||| | ||| || |||||| | Sbjct 752613 ----GTACATCCGTCTTCCAGTTACTTGCCAGCAAAGATCAGTCTTTGCCAATCAGGAAG 752668 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 |||||||| ||||| || || | ||||||||| | | | ||| || | ||| || Sbjct 752669 AATTCCTTCCTTATCCTGGATCCTGGCCTTTACATTATCTGTTGTATCCGAGGGTTCAAC 752728 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 | ||||| ||||| || ||||| | ||||| || || |||||||| || Sbjct 752729 CTTGAGAGTGATGGTCTTCCCAGTAAGGGTTTTGATGAAAATCTGCATCTT 752779 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 983679802657650