Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04]
63,439 sequences; 2,073,344,508 total letters
Query= NC_021249.1
Length=282895
Score E
Sequences producing significant alignments: (Bits) Value
seq73 96.9 6e-15
seq142 95.1 2e-14
seq29432 93.3 8e-14
seq69 89.7 9e-13
seq188 84.2 4e-11
>seq73
Length=6645612
Score = 96.9 bits (106), Expect = 6e-15
Identities = 152/218 (70%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 171855 CGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCG 171914
|| || || | ||| | ||| | ||| || | ||| || | | || |||| ||| |
Sbjct 5748475 CGCAACACAAGATGAAGAGTGGACTCCTTTGGAATGTTGCAGTTAGACAAAGTGCGTCCA 5748416
Query 171915 TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTA 171974
| |||| ||| || |||| ||| ||| ||| || || |||| || ||||||||||||
Sbjct 5748415 GCTTCCAGTTGCTTGCCAGAAAAGCTTAGTCTTTGCTGAACAGGAGGAATTCCTTCTTTA 5748356
Query 171975 TCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATG 172034
|| || || || |||||||| | ||||| | | ||| || || ||||||||
Sbjct 5748355 TCCTGGATCTTGGCCTTTACATTGTCCACTGTATCCAAGGGTTCAACCTCGAGAGTAATA 5748296
Query 172035 GTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072
||||| ||||| | ||| | ||||| |||||||| ||
Sbjct 5748295 GTTTTCCCAGTAAGAGTTCTCATGAAAATCTGCATCTT 5748258
>seq142
Length=3748655
Score = 95.1 bits (104), Expect = 2e-14
Identities = 166/241 (69%), Gaps = 2/241 (1%)
Strand=Plus/Minus
Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATT 171892
|||| || |||||| ||||| || || | ||| | ||| | ||| || ||| ||
Sbjct 2343195 TTTCTTAGCACCACCATGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTT 2343136
Query 171893 ATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTG 171952
|| || || |||| ||| || || || || |||||||| | | ||| ||||
Sbjct 2343135 GTAGTCAGACAAAGTACGTCTATCTTCG--TTTCTTGCCAGCAAAGCTCAGTCTTTGTTA 2343078
Query 171953 GTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGA 172012
||||| || |||||||||||||| || | || | |||||||| ||| ||||| |
Sbjct 2343077 ATCAGGAGGAATTCCTTCTTTATCCTGGGTCTTGGTCTTTACATTTTCTATTGTATCCAA 2343018
Query 172013 CGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072
| ||| || || ||||| |||| ||| | ||| | ||||| | ||| ||||| || ||
Sbjct 2343017 GGGTTCAACCTCAAGAGTGATGGATTTCCAAGTAAGGGTTTTCACGAAAATCTGTATCTT 2342958
Query 172073 A 172073
|
Sbjct 2342957 A 2342957
>seq29432
Length=351
Score = 93.3 bits (102), Expect = 8e-14
Identities = 162/236 (69%), Gaps = 0/236 (0%)
Strand=Plus/Plus
Query 171837 ATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAA 171896
|| ||||| ||||| || | || || | ||| | || | ||||| || || ||
Sbjct 106 ATGATACCTCCTCTGAGCCTCAACACAAGATGAAGCGTGGATTCTTTCTGGATGTTGTAG 165
Query 171897 TCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCA 171956
|| | |||| || |||| || | ||||| ||||| || || |||| ||| || ||
Sbjct 166 TCAGCCAAAGTACGCCCGTCTTCGAGCTGTTTTCCAGCGAAGATCAATCGCTGCTGATCC 225
Query 171957 GGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGAT 172016
|| || ||||||||||| ||||| || || || ||||| || || || || ||
Sbjct 226 GGAGGGATTCCTTCTTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTGTCAGAGGAC 285
Query 172017 TCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072
|| || || || || ||||| || || |||| ||||| | ||| |||||||| ||
Sbjct 286 TCGACCTCGAGGGTGATGGTCTTGCCGGTTAGGGTTTTCACGAAGATCTGCATCTT 341
>seq69
Length=3989787
Score = 89.7 bits (98), Expect = 9e-13
Identities = 114/156 (73%), Gaps = 1/156 (1%)
Strand=Plus/Minus
Query 171918 TCCAATTGTTTACCAGCAAAAATTAATCTCT-GTTGGTCAGGTGGTATTCCTTCTTTATC 171976
|||| ||| || |||||||| || | ||| | | || ||||| | ||||||||||||||
Sbjct 665439 TCCAGTTGCTTGCCAGCAAAGATCAGTCTTTTGCTGATCAGGAGAAATTCCTTCTTTATC 665380
Query 171977 TTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGT 172036
|| || | |||||||| ||| ||||| || | ||| || || || || |||||
Sbjct 665379 CTGGATCTGGGCCTTTACATTTTCTATTGTATCCGAGGGTTCAACCTCAAGGGTGATGGT 665320
Query 172037 TTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072
|| ||||| | ||||| | ||| |||||||| ||
Sbjct 665319 CTTCCCAGTAAGAGTTTTCACGAAAATCTGCATCTT 665284
>seq188
Length=3215107
Score = 84.2 bits (92), Expect = 4e-11
Identities = 160/236 (68%), Gaps = 0/236 (0%)
Strand=Plus/Minus
Query 171834 TTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTA 171893
|| || |||||||| | || | | || | || | ||| | |||||| ||||||
Sbjct 2830979 TTGATGATACCACCCCGCAGATGAAGCACCGAGTGCAGAGTGGACTCTTTCTGGATATTA 2830920
Query 171894 TAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGG 171953
|| ||||| | || || | || |||| ||||| || |||||||| | | ||| |||
Sbjct 2830919 TAGTCTGAGAGAGTGCGGCCATCCTCCAGCTGTTTGCCCGCAAAAATCAGACGCTGCTGG 2830860
Query 171954 TCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGAC 172013
|||||||| || || || || | ||| |||||| ||| ||||| ||||| ||
Sbjct 2830859 TCAGGTGGGATGCCCTCCTTGTTTTGGATTTTAGCTTTGACATTCTCAATAGTGTCATTG 2830800
Query 172014 GATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069
| | || || || || ||||| || || |||| || || | || ||||||||
Sbjct 2830799 GGCTTGACCTCAAGTGTGATGGTCTTGCCTGTTAGGGTCTTCACAAAGATCTGCAT 2830744
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 904418238466200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |