Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04] 63,439 sequences; 2,073,344,508 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq73 96.9 6e-15 seq142 95.1 2e-14 seq29432 93.3 8e-14 seq69 89.7 9e-13 seq188 84.2 4e-11 >seq73 Length=6645612 Score = 96.9 bits (106), Expect = 6e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 171855 CGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCG 171914 || || || | ||| | ||| | ||| || | ||| || | | || |||| ||| | Sbjct 5748475 CGCAACACAAGATGAAGAGTGGACTCCTTTGGAATGTTGCAGTTAGACAAAGTGCGTCCA 5748416 Query 171915 TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTA 171974 | |||| ||| || |||| ||| ||| ||| || || |||| || |||||||||||| Sbjct 5748415 GCTTCCAGTTGCTTGCCAGAAAAGCTTAGTCTTTGCTGAACAGGAGGAATTCCTTCTTTA 5748356 Query 171975 TCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATG 172034 || || || || |||||||| | ||||| | | ||| || || |||||||| Sbjct 5748355 TCCTGGATCTTGGCCTTTACATTGTCCACTGTATCCAAGGGTTCAACCTCGAGAGTAATA 5748296 Query 172035 GTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 ||||| ||||| | ||| | ||||| |||||||| || Sbjct 5748295 GTTTTCCCAGTAAGAGTTCTCATGAAAATCTGCATCTT 5748258 >seq142 Length=3748655 Score = 95.1 bits (104), Expect = 2e-14 Identities = 166/241 (69%), Gaps = 2/241 (1%) Strand=Plus/Minus Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATT 171892 |||| || |||||| ||||| || || | ||| | ||| | ||| || ||| || Sbjct 2343195 TTTCTTAGCACCACCATGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTT 2343136 Query 171893 ATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTG 171952 || || || |||| ||| || || || || |||||||| | | ||| |||| Sbjct 2343135 GTAGTCAGACAAAGTACGTCTATCTTCG--TTTCTTGCCAGCAAAGCTCAGTCTTTGTTA 2343078 Query 171953 GTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGA 172012 ||||| || |||||||||||||| || | || | |||||||| ||| ||||| | Sbjct 2343077 ATCAGGAGGAATTCCTTCTTTATCCTGGGTCTTGGTCTTTACATTTTCTATTGTATCCAA 2343018 Query 172013 CGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 | ||| || || ||||| |||| ||| | ||| | ||||| | ||| ||||| || || Sbjct 2343017 GGGTTCAACCTCAAGAGTGATGGATTTCCAAGTAAGGGTTTTCACGAAAATCTGTATCTT 2342958 Query 172073 A 172073 | Sbjct 2342957 A 2342957 >seq29432 Length=351 Score = 93.3 bits (102), Expect = 8e-14 Identities = 162/236 (69%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 171837 ATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAA 171896 || ||||| ||||| || | || || | ||| | || | ||||| || || || Sbjct 106 ATGATACCTCCTCTGAGCCTCAACACAAGATGAAGCGTGGATTCTTTCTGGATGTTGTAG 165 Query 171897 TCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCA 171956 || | |||| || |||| || | ||||| ||||| || || |||| ||| || || Sbjct 166 TCAGCCAAAGTACGCCCGTCTTCGAGCTGTTTTCCAGCGAAGATCAATCGCTGCTGATCC 225 Query 171957 GGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGAT 172016 || || ||||||||||| ||||| || || || ||||| || || || || || Sbjct 226 GGAGGGATTCCTTCTTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTGTCAGAGGAC 285 Query 172017 TCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 || || || || || ||||| || || |||| ||||| | ||| |||||||| || Sbjct 286 TCGACCTCGAGGGTGATGGTCTTGCCGGTTAGGGTTTTCACGAAGATCTGCATCTT 341 >seq69 Length=3989787 Score = 89.7 bits (98), Expect = 9e-13 Identities = 114/156 (73%), Gaps = 1/156 (1%) Strand=Plus/Minus Query 171918 TCCAATTGTTTACCAGCAAAAATTAATCTCT-GTTGGTCAGGTGGTATTCCTTCTTTATC 171976 |||| ||| || |||||||| || | ||| | | || ||||| | |||||||||||||| Sbjct 665439 TCCAGTTGCTTGCCAGCAAAGATCAGTCTTTTGCTGATCAGGAGAAATTCCTTCTTTATC 665380 Query 171977 TTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGT 172036 || || | |||||||| ||| ||||| || | ||| || || || || ||||| Sbjct 665379 CTGGATCTGGGCCTTTACATTTTCTATTGTATCCGAGGGTTCAACCTCAAGGGTGATGGT 665320 Query 172037 TTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 || ||||| | ||||| | ||| |||||||| || Sbjct 665319 CTTCCCAGTAAGAGTTTTCACGAAAATCTGCATCTT 665284 >seq188 Length=3215107 Score = 84.2 bits (92), Expect = 4e-11 Identities = 160/236 (68%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 171834 TTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTA 171893 || || |||||||| | || | | || | || | ||| | |||||| |||||| Sbjct 2830979 TTGATGATACCACCCCGCAGATGAAGCACCGAGTGCAGAGTGGACTCTTTCTGGATATTA 2830920 Query 171894 TAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGG 171953 || ||||| | || || | || |||| ||||| || |||||||| | | ||| ||| Sbjct 2830919 TAGTCTGAGAGAGTGCGGCCATCCTCCAGCTGTTTGCCCGCAAAAATCAGACGCTGCTGG 2830860 Query 171954 TCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGAC 172013 |||||||| || || || || | ||| |||||| ||| ||||| ||||| || Sbjct 2830859 TCAGGTGGGATGCCCTCCTTGTTTTGGATTTTAGCTTTGACATTCTCAATAGTGTCATTG 2830800 Query 172014 GATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 | | || || || || ||||| || || |||| || || | || |||||||| Sbjct 2830799 GGCTTGACCTCAAGTGTGATGGTCTTGCCTGTTAGGGTCTTCACAAAGATCTGCAT 2830744 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 904418238466200