Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04]
63,439 sequences; 2,073,344,508 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq4431 93.3 1e-13
seq220 91.5 4e-13
seq2979 87.8 5e-12
>seq4431
Length=2034
Score = 93.3 bits (102), Expect = 1e-13
Identities = 215/318 (68%), Gaps = 6/318 (2%)
Strand=Plus/Minus
Query 289029 ACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGC 289088
||||| ||||| || ||||| ||||| || | | ||| | | |||||| || |
Sbjct 854 ACCAATCGCATCGATCTCGTCTATGAATATAATGCTCGGTGCAGATTGTCTAGCTTCTTG 795
Query 289089 AAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGC 289148
|| || | ||| || | || | ||| | ||||||| |||| || | || || ||| |
Sbjct 794 GAACAAATGTCTCACCCTCGAAGGTCCCACACCAACAAACATCTCCATGAAATCTGAACC 735
Query 289149 GGATACTTGAATGAAT-GTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCT 289207
||||| | || ||| | ||| || ||| || || || | || | ||| ||||
Sbjct 734 GGATA-TAGACAGAAACGGGACACCTGATTCTCCAGCAGTAGCTTTTGCTAAAAGGGTCT 676
Query 289208 TACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGA-C 289266
| || |||||||| || || |||| || | || ||||| | || || || || | |
Sbjct 675 TTCCGGTTCCAGGAGGACCGACTAAAAGCGCGCCTTTTGGGATCTTAGCACC--CAAATC 618
Query 289267 TT-ATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTC 289325
|| ||| || | |||| |||| | || | ||||| ||| | ||| | |||||||||
Sbjct 617 TTCATACTTTTTAGGGTTCTTGAGGAAATGTACAAACTCCATGATTTCTTGTTTTGCCTC 558
Query 289326 ATCACATCCTGCTACATC 289343
||||||||| || |||||
Sbjct 557 ATCACATCCAGCGACATC 540
>seq220
Length=1446099
Score = 91.5 bits (100), Expect = 4e-13
Identities = 160/233 (69%), Gaps = 0/233 (0%)
Strand=Plus/Plus
Query 302607 ACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATG 302666
||||||| || || || || || || || || || || ||||||| ||||| |||||
Sbjct 1112391 ACCAGTTTCAGCAGTCTTGACGGCCGTGTCGATGAGCCCCTCACGACCTCCCATGGCATG 1112450
Query 302667 GAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGC 302726
||| || | ||| ||| || || | | ||||| |||| || || |||||
Sbjct 1112451 GAAAAAGAACTCGGTGGGTGTGAGGCCGGCCAGGTAGGAGTTCTCCACAAAGCCACGGCT 1112510
Query 302727 CTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGG 302786
||| ||| || |||| |||| | ||||| ||||| |||| || || | || ||||
Sbjct 1112511 CTCAGGCCCATAGTCGTCCTTGATGAAGTGAGGCAGAGTCCGGTGCTTGAATCCAAATGG 1112570
Query 302787 GATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAA 302839
|| ||||| || || ||||||||||| || | | | ||| | ||| ||||
Sbjct 1112571 AATCCGCTTGCCCTCCACGTTCTGCTGCCCGACGACAGCAATGACCTGGGAAA 1112623
>seq2979
Length=3475
Score = 87.8 bits (96), Expect = 5e-12
Identities = 116/160 (73%), Gaps = 1/160 (1%)
Strand=Plus/Minus
Query 233259 TTAAAAATGTT-GTAGCACCGTGAGCAATCATACAATCACGTTCCATTTCACCAATACGC 233317
|| |||| ||| | ||| || || |||||||| ||||||||||||||||| |||| ||||
Sbjct 3096 TTCAAAAAGTTAGCAGCGCCATGTGCAATCATGCAATCACGTTCCATTTCTCCAAAACGC 3037
Query 233318 AGACCACCATCATTTGACCTACCCTGGACTGTTTGACGAGTTAAAACAGTTCTTGGACCC 233377
|||||||||||| || | || | ||| ||| | |||||| | |||||
Sbjct 3036 AGACCACCATCACGGGATCGCCCTTCAGCTGGTTGTCTAGTTAAGATTTGCACAGGACCT 2977
Query 233378 TGAGCACGATAATTAATTTTATCTTTAACCATATGCTTCA 233417
| |||| | | ||| || || | ||||||||||||||
Sbjct 2976 CGTCCACGCGAGTGAATCTTGTCATCAACCATATGCTTCA 2937
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1470621288716943
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |