Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04] 63,439 sequences; 2,073,344,508 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq4431 93.3 1e-13 seq220 91.5 4e-13 seq2979 87.8 5e-12 >seq4431 Length=2034 Score = 93.3 bits (102), Expect = 1e-13 Identities = 215/318 (68%), Gaps = 6/318 (2%) Strand=Plus/Minus Query 289029 ACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGC 289088 ||||| ||||| || ||||| ||||| || | | ||| | | |||||| || | Sbjct 854 ACCAATCGCATCGATCTCGTCTATGAATATAATGCTCGGTGCAGATTGTCTAGCTTCTTG 795 Query 289089 AAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGC 289148 || || | ||| || | || | ||| | ||||||| |||| || | || || ||| | Sbjct 794 GAACAAATGTCTCACCCTCGAAGGTCCCACACCAACAAACATCTCCATGAAATCTGAACC 735 Query 289149 GGATACTTGAATGAAT-GTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCT 289207 ||||| | || ||| | ||| || ||| || || || | || | ||| |||| Sbjct 734 GGATA-TAGACAGAAACGGGACACCTGATTCTCCAGCAGTAGCTTTTGCTAAAAGGGTCT 676 Query 289208 TACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGA-C 289266 | || |||||||| || || |||| || | || ||||| | || || || || | | Sbjct 675 TTCCGGTTCCAGGAGGACCGACTAAAAGCGCGCCTTTTGGGATCTTAGCACC--CAAATC 618 Query 289267 TT-ATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTC 289325 || ||| || | |||| |||| | || | ||||| ||| | ||| | ||||||||| Sbjct 617 TTCATACTTTTTAGGGTTCTTGAGGAAATGTACAAACTCCATGATTTCTTGTTTTGCCTC 558 Query 289326 ATCACATCCTGCTACATC 289343 ||||||||| || ||||| Sbjct 557 ATCACATCCAGCGACATC 540 >seq220 Length=1446099 Score = 91.5 bits (100), Expect = 4e-13 Identities = 160/233 (69%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 302607 ACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATG 302666 ||||||| || || || || || || || || || || ||||||| ||||| ||||| Sbjct 1112391 ACCAGTTTCAGCAGTCTTGACGGCCGTGTCGATGAGCCCCTCACGACCTCCCATGGCATG 1112450 Query 302667 GAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGC 302726 ||| || | ||| ||| || || | | ||||| |||| || || ||||| Sbjct 1112451 GAAAAAGAACTCGGTGGGTGTGAGGCCGGCCAGGTAGGAGTTCTCCACAAAGCCACGGCT 1112510 Query 302727 CTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGG 302786 ||| ||| || |||| |||| | ||||| ||||| |||| || || | || |||| Sbjct 1112511 CTCAGGCCCATAGTCGTCCTTGATGAAGTGAGGCAGAGTCCGGTGCTTGAATCCAAATGG 1112570 Query 302787 GATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAA 302839 || ||||| || || ||||||||||| || | | | ||| | ||| |||| Sbjct 1112571 AATCCGCTTGCCCTCCACGTTCTGCTGCCCGACGACAGCAATGACCTGGGAAA 1112623 >seq2979 Length=3475 Score = 87.8 bits (96), Expect = 5e-12 Identities = 116/160 (73%), Gaps = 1/160 (1%) Strand=Plus/Minus Query 233259 TTAAAAATGTT-GTAGCACCGTGAGCAATCATACAATCACGTTCCATTTCACCAATACGC 233317 || |||| ||| | ||| || || |||||||| ||||||||||||||||| |||| |||| Sbjct 3096 TTCAAAAAGTTAGCAGCGCCATGTGCAATCATGCAATCACGTTCCATTTCTCCAAAACGC 3037 Query 233318 AGACCACCATCATTTGACCTACCCTGGACTGTTTGACGAGTTAAAACAGTTCTTGGACCC 233377 |||||||||||| || | || | ||| ||| | |||||| | ||||| Sbjct 3036 AGACCACCATCACGGGATCGCCCTTCAGCTGGTTGTCTAGTTAAGATTTGCACAGGACCT 2977 Query 233378 TGAGCACGATAATTAATTTTATCTTTAACCATATGCTTCA 233417 | |||| | | ||| || || | |||||||||||||| Sbjct 2976 CGTCCACGCGAGTGAATCTTGTCATCAACCATATGCTTCA 2937 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1470621288716943