Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04] 63,439 sequences; 2,073,344,508 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq4624 93.3 3e-14 seq19370 87.8 1e-12 seq17446 87.8 1e-12 seq10281 86.0 5e-12 seq19201 84.2 2e-11 seq29432 82.4 6e-11 >seq4624 Length=1927 Score = 93.3 bits (102), Expect = 3e-14 Identities = 117/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 34450 TGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGTAAATGGCCGGACGTCCAAGCGCC 34509 ||||| || ||||| || || ||||||||||| | |||| || || | || | ||| Sbjct 1343 TGCGCACCGAGCTCACAACCAAAGTACTTTGTAGTGTAAGCAGCAGGTCTACCCAAAGCC 1402 Query 34510 TTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCGTTGCCCTTTCCTTCGACC 34569 || ||||| || |||||| || || |||||||||||| ||||| | ||||||| | Sbjct 1403 TTAGCGATCTCAACCATGTTAACAATATTAGTCTTGATGCCATTGCCTCTACCTTCGATC 1462 Query 34570 TTGGCGCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGTC 34610 || | || | |||||||||||| | |||||| || || Sbjct 1463 TTTGTCATCATCCTCGGCATTTTGTACCTGTAGAAGGCATC 1503 >seq19370 Length=533 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 110288 AAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGACGATACTGTCGGCCAG 110347 ||||| |||||||||| ||||| || |||| ||| ||| || ||| | | Sbjct 1 AAAACCCTAACCGGCAAGACCATCACTCTCGAGGTCGAGAGCAGCGACACCATCGACAAT 60 Query 110348 GTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAACAAAGACTTATTTAT 110407 || || || ||| ||||| |||||| | || |||||| || || | || | Sbjct 61 GTCAAGGCCAAAATTCAAGACAAGGAAGGCATCCCTCCGGATCAGCAGAGGTTGATCTTC 120 Query 110408 GCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAACATTCAAAAAGAATCT 110467 || || |||||||| ||||||| | | || |||| || ||||| ||||||||||||||| Sbjct 121 GCCGGAAAACAGCTCGAGGATGGCCGTACCTTGGCCGACTACAATATTCAAAAAGAATCT 180 Query 110468 ACGTTGCACATGGTGTTAAGACT 110490 || ||||| | ||| | || || Sbjct 181 ACACTGCACCTTGTGCTGAGGCT 203 >seq17446 Length=585 Score = 87.8 bits (96), Expect = 1e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 110366 GACAAAGAAGGCGTGCCCGTGGATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAG 110425 ||||||||||| | || |||||||| || || || | ||| || || || ||||| Sbjct 15 GACAAAGAAGGTATACCACCAGATCAACAGAGGCTGATATTTGCCGGAAAGCAACTGGAA 74 Query 110426 GATGCCAGAACAATGGCGGATTACAACATTCAAAAAGAATCTACGTTGCACATGGTGTTA 110485 |||| | |||| | ||||||||||||||||| ||||| ||||| | ||| | || || Sbjct 75 GATGGCCGAACCCTAGCGGATTACAACATTCAGAAAGAGTCTACTCTTCACCTCGTCTTG 134 Query 110486 AGACTGCGAGGGGGAA 110501 || || |||| |||| Sbjct 135 AGGCTCAGAGGTGGAA 150 >seq10281 Length=966 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| ||||| ||||| || || || || || ||||| | || |||| Sbjct 491 ATGCAAATCTTTGTTAAAACCTTGACGGGGAAGACGATTACTTTGGAGGTGGAGAGCTCT 550 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| ||| | | || ||| || || |||||||||||| | || |||||| Sbjct 551 GATACCATCGACAACGTGAAAGCCAAAATCCAAGACAAAGAAGGCATCCCACCGGATCAG 610 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || ||| | || | ||| || || ||||| || || | | | || |||| || |||||| Sbjct 611 CAGAGATTGATCTTTGCAGGAAAGCAGCTCGAAGACGGCCGGACTTTGGCTGACTACAAC 670 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTT 110484 || || || || |||||| | ||| |||| || Sbjct 671 ATCCAGAAGGAGTCTACGCTTCACTTGGTCTT 702 >seq19201 Length=536 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 110270 AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCT 110329 |||||||| || ||||| ||||| |||| || || || || ||| | || || | Sbjct 508 AAAATGCAGATCTTTGTGAAAACCCTAACGGGGAAGACGATAACCCTAGAGGTTGAATCG 449 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 ||| || ||| | | || || |||||| ||||| ||||| | || |||| Sbjct 448 TCCGACACGATCGACAATGTGAAGGCGAAGATCCAGGACAAGGAAGGAATCCCACCGGAT 389 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 || || | || || | ||||| || |||||||| || | || ||| | ||||||||| Sbjct 388 CAGCAGCGGCTGATATTCGCGGGGAAGCAGCTGGAAGACGGAAGGACACTCGCGGATTAC 329 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGA 110500 ||||| || || || || ||| | ||| |||| | | ||| |||| ||| Sbjct 328 AACATCCAGAAGGAGTCGACGCTTCACTTGGTTCTCCGTCTGAGAGGAGGA 278 >seq29432 Length=351 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 110270 AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCT 110329 || ||||| || || || ||||| |||||||||| ||||| ||| |||| ||| | Sbjct 341 AAGATGCAGATCTTCGTGAAAACCCTAACCGGCAAGACCATCACCCTCGAGGTCGAGTCC 282 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 || || ||| | | || || ||||| ||||||||||| | || |||| Sbjct 281 TCTGACACCATCGACAATGTCAAGGCCAAGATCCAAGACAAAGAAGGAATCCCTCCGGAT 222 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 || || || | || | || || |||||||| || || | | || |||| || ||| Sbjct 221 CAGCAGCGATTGATCTTCGCTGGAAAACAGCTCGAAGACGGGCGTACTTTGGCTGACTAC 162 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 ||||| || |||||||| ||| | || | ||||| || || |||| || Sbjct 161 AACATCCAGAAAGAATCCACGCTTCATCTTGTGTTGAGGCTCAGAGGAGG 112 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412522406227427