Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04]
63,439 sequences; 2,073,344,508 total letters
Query= NC_021924.1
Length=129052
Score E
Sequences producing significant alignments: (Bits) Value
seq4624 93.3 3e-14
seq19370 87.8 1e-12
seq17446 87.8 1e-12
seq10281 86.0 5e-12
seq19201 84.2 2e-11
seq29432 82.4 6e-11
>seq4624
Length=1927
Score = 93.3 bits (102), Expect = 3e-14
Identities = 117/161 (73%), Gaps = 0/161 (0%)
Strand=Plus/Plus
Query 34450 TGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGTAAATGGCCGGACGTCCAAGCGCC 34509
||||| || ||||| || || ||||||||||| | |||| || || | || | |||
Sbjct 1343 TGCGCACCGAGCTCACAACCAAAGTACTTTGTAGTGTAAGCAGCAGGTCTACCCAAAGCC 1402
Query 34510 TTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCGTTGCCCTTTCCTTCGACC 34569
|| ||||| || |||||| || || |||||||||||| ||||| | ||||||| |
Sbjct 1403 TTAGCGATCTCAACCATGTTAACAATATTAGTCTTGATGCCATTGCCTCTACCTTCGATC 1462
Query 34570 TTGGCGCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGTC 34610
|| | || | |||||||||||| | |||||| || ||
Sbjct 1463 TTTGTCATCATCCTCGGCATTTTGTACCTGTAGAAGGCATC 1503
>seq19370
Length=533
Score = 87.8 bits (96), Expect = 1e-12
Identities = 141/203 (69%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 110288 AAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGACGATACTGTCGGCCAG 110347
||||| |||||||||| ||||| || |||| ||| ||| || ||| | |
Sbjct 1 AAAACCCTAACCGGCAAGACCATCACTCTCGAGGTCGAGAGCAGCGACACCATCGACAAT 60
Query 110348 GTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAACAAAGACTTATTTAT 110407
|| || || ||| ||||| |||||| | || |||||| || || | || |
Sbjct 61 GTCAAGGCCAAAATTCAAGACAAGGAAGGCATCCCTCCGGATCAGCAGAGGTTGATCTTC 120
Query 110408 GCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAACATTCAAAAAGAATCT 110467
|| || |||||||| ||||||| | | || |||| || ||||| |||||||||||||||
Sbjct 121 GCCGGAAAACAGCTCGAGGATGGCCGTACCTTGGCCGACTACAATATTCAAAAAGAATCT 180
Query 110468 ACGTTGCACATGGTGTTAAGACT 110490
|| ||||| | ||| | || ||
Sbjct 181 ACACTGCACCTTGTGCTGAGGCT 203
>seq17446
Length=585
Score = 87.8 bits (96), Expect = 1e-12
Identities = 101/136 (74%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 110366 GACAAAGAAGGCGTGCCCGTGGATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAG 110425
||||||||||| | || |||||||| || || || | ||| || || || |||||
Sbjct 15 GACAAAGAAGGTATACCACCAGATCAACAGAGGCTGATATTTGCCGGAAAGCAACTGGAA 74
Query 110426 GATGCCAGAACAATGGCGGATTACAACATTCAAAAAGAATCTACGTTGCACATGGTGTTA 110485
|||| | |||| | ||||||||||||||||| ||||| ||||| | ||| | || ||
Sbjct 75 GATGGCCGAACCCTAGCGGATTACAACATTCAGAAAGAGTCTACTCTTCACCTCGTCTTG 134
Query 110486 AGACTGCGAGGGGGAA 110501
|| || |||| ||||
Sbjct 135 AGGCTCAGAGGTGGAA 150
>seq10281
Length=966
Score = 86.0 bits (94), Expect = 5e-12
Identities = 146/212 (69%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332
|||||||| ||||| ||||| || || || || || ||||| | || ||||
Sbjct 491 ATGCAAATCTTTGTTAAAACCTTGACGGGGAAGACGATTACTTTGGAGGTGGAGAGCTCT 550
Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392
||||| ||| | | || ||| || || |||||||||||| | || ||||||
Sbjct 551 GATACCATCGACAACGTGAAAGCCAAAATCCAAGACAAAGAAGGCATCCCACCGGATCAG 610
Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452
|| ||| | || | ||| || || ||||| || || | | | || |||| || ||||||
Sbjct 611 CAGAGATTGATCTTTGCAGGAAAGCAGCTCGAAGACGGCCGGACTTTGGCTGACTACAAC 670
Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTT 110484
|| || || || |||||| | ||| |||| ||
Sbjct 671 ATCCAGAAGGAGTCTACGCTTCACTTGGTCTT 702
>seq19201
Length=536
Score = 84.2 bits (92), Expect = 2e-11
Identities = 157/231 (68%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 110270 AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCT 110329
|||||||| || ||||| ||||| |||| || || || || ||| | || || |
Sbjct 508 AAAATGCAGATCTTTGTGAAAACCCTAACGGGGAAGACGATAACCCTAGAGGTTGAATCG 449
Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389
||| || ||| | | || || |||||| ||||| ||||| | || ||||
Sbjct 448 TCCGACACGATCGACAATGTGAAGGCGAAGATCCAGGACAAGGAAGGAATCCCACCGGAT 389
Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449
|| || | || || | ||||| || |||||||| || | || ||| | |||||||||
Sbjct 388 CAGCAGCGGCTGATATTCGCGGGGAAGCAGCTGGAAGACGGAAGGACACTCGCGGATTAC 329
Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGA 110500
||||| || || || || ||| | ||| |||| | | ||| |||| |||
Sbjct 328 AACATCCAGAAGGAGTCGACGCTTCACTTGGTTCTCCGTCTGAGAGGAGGA 278
>seq29432
Length=351
Score = 82.4 bits (90), Expect = 6e-11
Identities = 156/230 (68%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 110270 AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCT 110329
|| ||||| || || || ||||| |||||||||| ||||| ||| |||| ||| |
Sbjct 341 AAGATGCAGATCTTCGTGAAAACCCTAACCGGCAAGACCATCACCCTCGAGGTCGAGTCC 282
Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389
|| || ||| | | || || ||||| ||||||||||| | || ||||
Sbjct 281 TCTGACACCATCGACAATGTCAAGGCCAAGATCCAAGACAAAGAAGGAATCCCTCCGGAT 222
Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449
|| || || | || | || || |||||||| || || | | || |||| || |||
Sbjct 221 CAGCAGCGATTGATCTTCGCTGGAAAACAGCTCGAAGACGGGCGTACTTTGGCTGACTAC 162
Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499
||||| || |||||||| ||| | || | ||||| || || |||| ||
Sbjct 161 AACATCCAGAAAGAATCCACGCTTCATCTTGTGTTGAGGCTCAGAGGAGG 112
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 412522406227427
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |