Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04] 63,439 sequences; 2,073,344,508 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq10281 109 4e-19 seq475 86.0 5e-12 seq59367 82.4 6e-11 seq19370 82.4 6e-11 >seq10281 Length=966 Score = 109 bits (120), Expect = 4e-19 Identities = 154/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 |||||||| ||||| ||||| || || || || || ||||| | || |||| ||| Sbjct 491 ATGCAAATCTTTGTTAAAACCTTGACGGGGAAGACGATTACTTTGGAGGTGGAGAGCTCT 550 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||||| ||| | | || ||| || || || ||||||||| | || |||||| Sbjct 551 -GATACCATCGACAACGTGAAAGCCAAAATCCAAGACAAAGAAGGCATCCCACCGGATCA 609 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 ||||||| | || | ||| || || ||||| || |||| | || |||| |||||||| Sbjct 610 GCAGAGATTGATCTTTGCAGGAAAGCAGCTCGAAGACGGCCGGACTTTGGCTGACTACAA 669 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768 ||| || |||||||||||| | ||| |||| ||| Sbjct 670 CATCCAGAAGGAGTCTACGCTTCACTTGGTCTTG 703 Score = 84.2 bits (92), Expect = 2e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 107649 GATAAAGAAGGCGTGCCCGTGGATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAG 107708 ||||| |||||| | || ||| |||||||| ||||| | || || |||||||| || Sbjct 128 GATAAGGAAGGCATCCCGCCGGACCAGCAGAGGCTTATCTTCGCCGGCAAACAGCTCGAA 187 Query 107709 GACGCCAAAACAATGGCGGACTACAACATTCAAAAGGAGTCTACGTTGCACATGGT 107764 |||| | ||| |||| ||||||||||| || || ||||| ||| | ||| |||| Sbjct 188 GACGGCCGAACTTTGGCCGACTACAACATCCAGAAAGAGTCCACGCTCCACTTGGT 243 >seq475 Length=1570329 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCT 107612 |||||||||||||| || || || | || ||||| ||||| ||| | || |||| | Sbjct 1255877 AAAATGCAAATTTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGAGCCC 1255936 Query 107613 GGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGAT 107672 |||| || | | | || || ||||| ||||| || ||| | ||| || Sbjct 1255937 AGCGACACCATTGAGAATGTGAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCTGAC 1255996 Query 107673 CAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTAC 107732 |||||||| || || | |||||| || |||||||| || | | || | | |||||| Sbjct 1255997 CAGCAGAGGCTCATCTTTGCGGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGACTAC 1256056 Query 107733 AACATTCAAAAGGAGTCTACGTTGCACATGGT 107764 ||||| || || ||||| || ||||| |||| Sbjct 1256057 AACATCCAGAAAGAGTCGACCCTGCACCTGGT 1256088 >seq59367 Length=207 Score = 82.4 bits (90), Expect = 6e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 107649 GATAAAGAAGGCGTGCCCGTGGATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAG 107708 ||||| ||||| | || |||||||||||| || || | || || ||||| || || Sbjct 25 GATAAGGAAGGTATCCCACCGGATCAGCAGAGGCTCATCTTCGCCGGAAAACAACTTGAA 84 Query 107709 GACGCCAAAACAATGGCGGACTACAACATTCAAAAGGAGTCTACGTTGCA 107758 |||| || ||| |||| ||||||||||| ||||||||||| || || || Sbjct 85 GACGGCAGAACTTTGGCCGACTACAACATCCAAAAGGAGTCGACTTTACA 134 >seq19370 Length=533 Score = 82.4 bits (90), Expect = 6e-11 Identities = 138/200 (69%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 107571 AAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGCGATACTGTCGGCCAG 107630 ||||| |||| ||||| ||||| || |||| ||| |||| || ||| | | Sbjct 1 AAAACCCTAACCGGCAAGACCATCACTCTCGAGGTCGAGAGCAGCGACACCATCGACAAT 60 Query 107631 GTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAGCAGAGACTTATTTAT 107690 || || || ||| || || |||||| | || |||||||||||| | || | Sbjct 61 GTCAAGGCCAAAATTCAAGACAAGGAAGGCATCCCTCCGGATCAGCAGAGGTTGATCTTC 120 Query 107691 GCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAACATTCAAAAGGAGTCT 107750 || || |||||||| ||||| | | || |||| |||||||| |||||||| || ||| Sbjct 121 GCCGGAAAACAGCTCGAGGATGGCCGTACCTTGGCCGACTACAATATTCAAAAAGAATCT 180 Query 107751 ACGTTGCACATGGTGTTGAG 107770 || ||||| | ||| |||| Sbjct 181 ACACTGCACCTTGTGCTGAG 200 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398568403291471