Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04]
63,439 sequences; 2,073,344,508 total letters
Query= NC_023177.1
Length=124688
Score E
Sequences producing significant alignments: (Bits) Value
seq10281 109 4e-19
seq475 86.0 5e-12
seq59367 82.4 6e-11
seq19370 82.4 6e-11
>seq10281
Length=966
Score = 109 bits (120), Expect = 4e-19
Identities = 154/214 (72%), Gaps = 2/214 (1%)
Strand=Plus/Plus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614
|||||||| ||||| ||||| || || || || || ||||| | || |||| |||
Sbjct 491 ATGCAAATCTTTGTTAAAACCTTGACGGGGAAGACGATTACTTTGGAGGTGGAGAGCTCT 550
Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674
||||| ||| | | || ||| || || || ||||||||| | || ||||||
Sbjct 551 -GATACCATCGACAACGTGAAAGCCAAAATCCAAGACAAAGAAGGCATCCCACCGGATCA 609
Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734
||||||| | || | ||| || || ||||| || |||| | || |||| ||||||||
Sbjct 610 GCAGAGATTGATCTTTGCAGGAAAGCAGCTCGAAGACGGCCGGACTTTGGCTGACTACAA 669
Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768
||| || |||||||||||| | ||| |||| |||
Sbjct 670 CATCCAGAAGGAGTCTACGCTTCACTTGGTCTTG 703
Score = 84.2 bits (92), Expect = 2e-11
Identities = 88/116 (76%), Gaps = 0/116 (0%)
Strand=Plus/Plus
Query 107649 GATAAAGAAGGCGTGCCCGTGGATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAG 107708
||||| |||||| | || ||| |||||||| ||||| | || || |||||||| ||
Sbjct 128 GATAAGGAAGGCATCCCGCCGGACCAGCAGAGGCTTATCTTCGCCGGCAAACAGCTCGAA 187
Query 107709 GACGCCAAAACAATGGCGGACTACAACATTCAAAAGGAGTCTACGTTGCACATGGT 107764
|||| | ||| |||| ||||||||||| || || ||||| ||| | ||| ||||
Sbjct 188 GACGGCCGAACTTTGGCCGACTACAACATCCAGAAAGAGTCCACGCTCCACTTGGT 243
>seq475
Length=1570329
Score = 86.0 bits (94), Expect = 5e-12
Identities = 146/212 (69%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCT 107612
|||||||||||||| || || || | || ||||| ||||| ||| | || |||| |
Sbjct 1255877 AAAATGCAAATTTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGAGCCC 1255936
Query 107613 GGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGAT 107672
|||| || | | | || || ||||| ||||| || ||| | ||| ||
Sbjct 1255937 AGCGACACCATTGAGAATGTGAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCTGAC 1255996
Query 107673 CAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTAC 107732
|||||||| || || | |||||| || |||||||| || | | || | | ||||||
Sbjct 1255997 CAGCAGAGGCTCATCTTTGCGGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGACTAC 1256056
Query 107733 AACATTCAAAAGGAGTCTACGTTGCACATGGT 107764
||||| || || ||||| || ||||| ||||
Sbjct 1256057 AACATCCAGAAAGAGTCGACCCTGCACCTGGT 1256088
>seq59367
Length=207
Score = 82.4 bits (90), Expect = 6e-11
Identities = 84/110 (76%), Gaps = 0/110 (0%)
Strand=Plus/Plus
Query 107649 GATAAAGAAGGCGTGCCCGTGGATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAG 107708
||||| ||||| | || |||||||||||| || || | || || ||||| || ||
Sbjct 25 GATAAGGAAGGTATCCCACCGGATCAGCAGAGGCTCATCTTCGCCGGAAAACAACTTGAA 84
Query 107709 GACGCCAAAACAATGGCGGACTACAACATTCAAAAGGAGTCTACGTTGCA 107758
|||| || ||| |||| ||||||||||| ||||||||||| || || ||
Sbjct 85 GACGGCAGAACTTTGGCCGACTACAACATCCAAAAGGAGTCGACTTTACA 134
>seq19370
Length=533
Score = 82.4 bits (90), Expect = 6e-11
Identities = 138/200 (69%), Gaps = 0/200 (0%)
Strand=Plus/Plus
Query 107571 AAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGCGATACTGTCGGCCAG 107630
||||| |||| ||||| ||||| || |||| ||| |||| || ||| | |
Sbjct 1 AAAACCCTAACCGGCAAGACCATCACTCTCGAGGTCGAGAGCAGCGACACCATCGACAAT 60
Query 107631 GTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAGCAGAGACTTATTTAT 107690
|| || || ||| || || |||||| | || |||||||||||| | || |
Sbjct 61 GTCAAGGCCAAAATTCAAGACAAGGAAGGCATCCCTCCGGATCAGCAGAGGTTGATCTTC 120
Query 107691 GCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAACATTCAAAAGGAGTCT 107750
|| || |||||||| ||||| | | || |||| |||||||| |||||||| || |||
Sbjct 121 GCCGGAAAACAGCTCGAGGATGGCCGTACCTTGGCCGACTACAATATTCAAAAAGAATCT 180
Query 107751 ACGTTGCACATGGTGTTGAG 107770
|| ||||| | ||| ||||
Sbjct 181 ACACTGCACCTTGTGCTGAG 200
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 398568403291471
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |