Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04] 63,439 sequences; 2,073,344,508 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq29432 136 3e-27 seq273 127 2e-24 seq19201 120 2e-22 seq10281 120 2e-22 seq19370 116 3e-21 seq189 107 1e-18 seq671 105 5e-18 seq142 100 2e-16 seq25626 93.3 3e-14 seq342 87.8 1e-12 seq419 86.0 5e-12 >seq29432 Length=351 Score = 136 bits (150), Expect = 3e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| || | | || ||| | |||||||||||||||||| || ||||| || || || Sbjct 112 CCTCCTCTGAGCCTCAACACAAGATGAAGCGTGGATTCTTTCTGGATGTTGTAGTCAGCC 171 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || || || ||||| ||||| ||||| | ||||||| ||||||||||| || Sbjct 172 AAAGTACGCCCGTCTTCGAGCTGTTTTCCAGCGAAGATCAATCGCTGCTGATCCGGAGGG 231 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || ||||||||||| | || |||||| | || | |||||||| || || Sbjct 232 ATTCCTTCTTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTGTCAGAGGACTCGACC 291 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || || || || || ||||| |||| |||||| || || |||||||| || Sbjct 292 TCGAGGGTGATGGTCTTGCCGGTTAGGGTTTTCACGAAGATCTGCATCTT 341 >seq273 Length=4066651 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||||||||| ||||| |||| || || ||||| ||||| || ||||| || || | Sbjct 887189 CCTCCCCTCAAGCGCAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCGGAC 887248 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| || || | |||||||| ||| | ||||| || ||||| || || || Sbjct 887249 AGGGTGCGTCCGTCTTCCAACTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGG 887308 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || |||||||||||||| | || |||||| | || | |||||| | || || Sbjct 887309 ATGCCCTCTTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACC 887368 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 || || || || || || || || ||||| || ||||| ||||||||| Sbjct 887369 TCCAGGGTGATGGTCTTACCGGTCAAGGTCTTCACAAAGATCTGCATT 887416 >seq19201 Length=536 Score = 120 bits (132), Expect = 2e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 |||||| |||| ||| || ||||| |||||||| || || || || ||||| |||||||| Sbjct 278 TCCTCCTCTCAGACGGAGAACCAAGTGAAGCGTCGACTCCTTCTGGATGTTGTAATCCGC 337 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 | || | || || || || || || || |||||| | ||||||||||| || Sbjct 338 GAGTGTCCTTCCGTCTTCCAGCTGCTTCCCCGCGAATATCAGCCGCTGCTGATCCGGTGG 397 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || || || ||||| || | || || ||| | || | ||||| || ||| || Sbjct 398 GATTCCTTCCTTGTCCTGGATCTTCGCCTTCACATTGTCGATCGTGTCGGACGATTCAAC 457 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || || ||||| || || || |||| |||||| ||||| ||||||||||| Sbjct 458 CTCTAGGGTTATCGTCTTCCCCGTTAGGGTTTTCACAAAGATCTGCATTTT 508 >seq10281 Length=966 Score = 120 bits (132), Expect = 2e-22 Identities = 156/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||||| ||||| |||||||| || || || || ||||| || || || | || || Sbjct 706 ACGCAAGACCAAGTGAAGCGTAGACTCCTTCTGGATGTTGTAGTCAGCCAAAGTCCGGCC 647 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 || ||||| || || || ||| | |||||||| ||||||||||| || || || ||||| Sbjct 646 GTCTTCGAGCTGCTTTCCTGCAAAGATCAATCTCTGCTGATCCGGTGGGATGCCTTCTTT 587 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 |||||| | ||| ||| || | || | || ||||| || || || | ||| || Sbjct 586 GTCTTGGATTTTGGCTTTCACGTTGTCGATGGTATCAGAGCTCTCCACCTCCAAAGTAAT 527 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || |||||||||||||| || ||||| Sbjct 526 CGTCTTCCCCGTCAAGGTTTTAACAAAGATTTGCAT 491 Score = 105 bits (116), Expect = 5e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || ||||| || || || || ||||| || ||||| || || || | |||||| Sbjct 934 ACGAAGAACCAAGTGGAGGGTCGACTCTTTCTGGATGTTGTAGTCAGCCAATGTGCGACC 875 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || || || || ||||| | || | | ||||| ||||| || ||||| ||||| Sbjct 874 ATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGTGGGATACCTTCTTT 815 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 |||||| | ||| ||||| | || | ||| |||||| || || || ||||| || Sbjct 814 GTCTTGGATTTTAGCCTTGACGTTGTCGATAGTATCAGAACTCTCGACCTCCAGAGTGAT 755 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || | ||| || || || |||||||| Sbjct 754 GGTCTTCCCCGTAAGGGTCTTGACGAAGATCTGCAT 719 >seq19370 Length=533 Score = 116 bits (128), Expect = 3e-21 Identities = 155/213 (73%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 |||||||| | | |||||| | || || || |||||||||||||| || || || || Sbjct 212 CCTCCCCTAAGCCTCAGCACAAGGTGCAGTGTAGATTCTTTTTGAATATTGTAGTCGGCC 153 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||| || ||| ||||| ||||| || || | ||||| || ||||||||||| || Sbjct 152 AAGGTACGGCCATCCTCGAGCTGTTTTCCGGCGAAGATCAACCTCTGCTGATCCGGAGGG 93 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || || || |||||||| |||||| | |||||| | || | ||||| || || Sbjct 92 ATGCCTTCCTTGTCTTG-AATTTTGGCCTTGACATTGTCGATGGTGTCGCTGCTCTCGAC 34 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTT 29771 || ||||| || || ||||| |||| |||||| Sbjct 33 CTCGAGAGTGATGGTCTTGCCGGTTAGGGTTTT 1 >seq189 Length=4153236 Score = 107 bits (118), Expect = 1e-18 Identities = 154/216 (71%), Gaps = 1/216 (0%) Strand=Plus/Minus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633 || ||| | |||||| ||||| || |||| |||||| || || | | ||| | ||| Sbjct 1285428 CAACACAAGATGAAGAGTGGACTCCTTTTAAATGTTGTAGTCAGACAAGGTACATCCATC 1285369 Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693 || ||||| ||||||||| | ||| |||||||||||| || ||||| || || || || Sbjct 1285368 TTCCAGTTGCTTGCCAGCAAAG-TCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 1285310 Query 29694 TTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || | || ||| ||| ||||| || || || |||| || ||||||| || || Sbjct 1285309 CTGGATCTTGGCTTTTACATTTTCTCTTGTATCTGAGGGTTCAACCTCAAGAGGGATGGT 1285250 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || ||||| | ||||| | || |||||||| || Sbjct 1285249 CTTCCCAGTAAGGGTTTCCATGAAAATCTGCATCTT 1285214 >seq671 Length=818080 Score = 105 bits (116), Expect = 5e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633 || ||||| |||||| ||||| || ||||||||||| || || | | || | |||| Sbjct 168628 CAACACCAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACATCAATC 168569 Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693 || || || ||||||||| | |||| |||||||||| | || ||||| || || || || Sbjct 168568 TTCCAGCTGCTTGCCAGCAAAGATCAGTCTTTGCTGAGCAGGAGGAATTCCTTCCTTATC 168509 Query 29694 TTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || || || | | |||||| || | || |||| || ||||| || || || Sbjct 168508 CTGGGTCTTGGCCTTTATATTTTCTATTGTACCCGAGGGTTCAACCTCAAGGGTGATGGT 168449 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || ||||| | |||||| || || | |||||| || Sbjct 168448 CTTCCCAGTAAGGGTTTTCACGAAAAGCTGCATCTT 168413 >seq142 Length=3748655 Score = 100 bits (110), Expect = 2e-16 Identities = 155/218 (71%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633 || ||| | |||||| ||||| || ||||||||||| || || | | || || ||| Sbjct 2343171 CAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCTATC 2343112 Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693 || ||| ||||||||| | ||| |||||| | ||| || ||||| || ||||| || Sbjct 2343111 TTC--GTTTCTTGCCAGCAAAGCTCAGTCTTTGTTAATCAGGAGGAATTCCTTCTTTATC 2343054 Query 29694 TTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAG 29752 || | || || || ||| |||||| || || | |||| || |||||||| || | Sbjct 2343053 CTG-GGTCTTGGTCTTTACATTTTCTATTGTATCCAAGGGTTCAACCTCAAGAGTGATGG 2342995 Query 29753 TTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTTA 29790 ||| | ||| | |||||| || || ||||| || ||| Sbjct 2342994 ATTTCCAAGTAAGGGTTTTCACGAAAATCTGTATCTTA 2342957 >seq25626 Length=405 Score = 93.3 bits (102), Expect = 3e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 29590 GTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCA 29649 || || || || |||||||| || || || | |||||| || || || || || || Sbjct 326 GTCGACTCCTTCTGAATGTTGTAGTCGGCTAAGGTGCGGCCGTCTTCAAGCTGCTTCCCG 267 Query 29650 GCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG-TTT 29708 || | |||||||| ||||| ||||| ||||||||||| ||||| || ||| || | || Sbjct 266 GCGAAGATCAATCTCTGCTGGTCCGGAGGAATACCCTCCTTGTCCTG-AATCTTAGCCTT 208 Query 29709 GACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGT 29768 ||| | || | ||||| || || || || | ||| ||||| || || || | || Sbjct 207 GACGTTATCAATGGTGTCTGAGCTCTCAACCTCCAAAGTAATAGTCTTTCCGGTGAGAGT 148 Query 29769 TTTAACAAATATCTGCAT 29786 || ||||| |||||||| Sbjct 147 CTTCACAAAGATCTGCAT 130 >seq342 Length=1079620 Score = 87.8 bits (96), Expect = 1e-12 Identities = 121/168 (72%), Gaps = 1/168 (1%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||||||||| ||||| |||| || || ||||| || || || ||||| || | | Sbjct 690145 CCTCCCCTCAAGCGCAGGACCAG-TGCAGAGTGGACTCCTTCTGGATGTTGTAGTTGGAC 690087 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||||| ||| || || ||||| |||||| | | | | || ||||| || || || Sbjct 690086 AGAGTGCGTCCATCTTCCAGCTGTTTCCCAGCAAAGAGCTACCTCTGCTGGTCAGGGGGG 690027 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCA 29727 || |||||||||||||| | ||| |||||| | || | |||||| Sbjct 690026 ATGCCCTCTTTGTCTTGGATTTTGGCCTTGACATTCTCGATGGTGTCA 689979 >seq419 Length=824084 Score = 86.0 bits (94), Expect = 5e-12 Identities = 150/217 (69%), Gaps = 1/217 (0%) Strand=Plus/Minus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633 || ||| | || ||| ||||| || ||||||||||| || || | | ||| | ||| Sbjct 83740 CAACACAAGATAAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACACAGTGTGTCCATC 83681 Query 29634 -ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGT 29692 || ||||| ||||||||| | |||| ||| | | |||| || ||||| | || || | Sbjct 83680 TTTCCAGTTGCTTGCCAGCAAAGATCAGTCTGTACAGATCAGGAGGAATTTCTTCCTTAT 83621 Query 29693 CTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAG 29752 | || | || || ||| ||||| || || || |||| || || || || || | Sbjct 83620 CCTGGATCTTGGCCTTTACATTTTCTGTTGTATCCGAGGGTTCAACCTCGAGGGTGATGG 83561 Query 29753 TTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 | || ||||| | |||||| || || | |||||| || Sbjct 83560 TCTTCCCAGTAAGGGTTTTCACGAAAACCTGCATCTT 83524 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 384921362839899