Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04]
63,439 sequences; 2,073,344,508 total letters
Query= NC_023442.1
Length=120420
Score E
Sequences producing significant alignments: (Bits) Value
seq29432 136 3e-27
seq273 127 2e-24
seq19201 120 2e-22
seq10281 120 2e-22
seq19370 116 3e-21
seq189 107 1e-18
seq671 105 5e-18
seq142 100 2e-16
seq25626 93.3 3e-14
seq342 87.8 1e-12
seq419 86.0 5e-12
>seq29432
Length=351
Score = 136 bits (150), Expect = 3e-27
Identities = 168/230 (73%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619
||||| || | | || ||| | |||||||||||||||||| || ||||| || || ||
Sbjct 112 CCTCCTCTGAGCCTCAACACAAGATGAAGCGTGGATTCTTTCTGGATGTTGTAGTCAGCC 171
Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679
| || || || ||||| ||||| ||||| | ||||||| ||||||||||| ||
Sbjct 172 AAAGTACGCCCGTCTTCGAGCTGTTTTCCAGCGAAGATCAATCGCTGCTGATCCGGAGGG 231
Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739
|| || ||||||||||| | || |||||| | || | |||||||| || ||
Sbjct 232 ATTCCTTCTTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTGTCAGAGGACTCGACC 291
Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789
|| || || || || ||||| |||| |||||| || || |||||||| ||
Sbjct 292 TCGAGGGTGATGGTCTTGCCGGTTAGGGTTTTCACGAAGATCTGCATCTT 341
>seq273
Length=4066651
Score = 127 bits (140), Expect = 2e-24
Identities = 165/228 (72%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619
||||||||||| ||||| |||| || || ||||| ||||| || ||||| || || |
Sbjct 887189 CCTCCCCTCAAGCGCAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCGGAC 887248
Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679
| |||||| || || | |||||||| ||| | ||||| || ||||| || || ||
Sbjct 887249 AGGGTGCGTCCGTCTTCCAACTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGG 887308
Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739
|| |||||||||||||| | || |||||| | || | |||||| | || ||
Sbjct 887309 ATGCCCTCTTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACC 887368
Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787
|| || || || || || || || ||||| || ||||| |||||||||
Sbjct 887369 TCCAGGGTGATGGTCTTACCGGTCAAGGTCTTCACAAAGATCTGCATT 887416
>seq19201
Length=536
Score = 120 bits (132), Expect = 2e-22
Identities = 165/231 (71%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618
|||||| |||| ||| || ||||| |||||||| || || || || ||||| ||||||||
Sbjct 278 TCCTCCTCTCAGACGGAGAACCAAGTGAAGCGTCGACTCCTTCTGGATGTTGTAATCCGC 337
Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678
| || | || || || || || || || |||||| | ||||||||||| ||
Sbjct 338 GAGTGTCCTTCCGTCTTCCAGCTGCTTCCCCGCGAATATCAGCCGCTGCTGATCCGGTGG 397
Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738
|| || || ||||| || | || || ||| | || | ||||| || ||| ||
Sbjct 398 GATTCCTTCCTTGTCCTGGATCTTCGCCTTCACATTGTCGATCGTGTCGGACGATTCAAC 457
Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789
|| || ||||| || || || |||| |||||| ||||| |||||||||||
Sbjct 458 CTCTAGGGTTATCGTCTTCCCCGTTAGGGTTTTCACAAAGATCTGCATTTT 508
>seq10281
Length=966
Score = 120 bits (132), Expect = 2e-22
Identities = 156/216 (72%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630
||||| ||||| |||||||| || || || || ||||| || || || | || ||
Sbjct 706 ACGCAAGACCAAGTGAAGCGTAGACTCCTTCTGGATGTTGTAGTCAGCCAAAGTCCGGCC 647
Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690
|| ||||| || || || ||| | |||||||| ||||||||||| || || || |||||
Sbjct 646 GTCTTCGAGCTGCTTTCCTGCAAAGATCAATCTCTGCTGATCCGGTGGGATGCCTTCTTT 587
Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750
|||||| | ||| ||| || | || | || ||||| || || || | ||| ||
Sbjct 586 GTCTTGGATTTTGGCTTTCACGTTGTCGATGGTATCAGAGCTCTCCACCTCCAAAGTAAT 527
Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
|| || || || |||||||||||||| || |||||
Sbjct 526 CGTCTTCCCCGTCAAGGTTTTAACAAAGATTTGCAT 491
Score = 105 bits (116), Expect = 5e-18
Identities = 153/216 (71%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630
||| || ||||| || || || || ||||| || ||||| || || || | ||||||
Sbjct 934 ACGAAGAACCAAGTGGAGGGTCGACTCTTTCTGGATGTTGTAGTCAGCCAATGTGCGACC 875
Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690
||| || || || || ||||| | || | | ||||| ||||| || ||||| |||||
Sbjct 874 ATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGTGGGATACCTTCTTT 815
Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750
|||||| | ||| ||||| | || | ||| |||||| || || || ||||| ||
Sbjct 814 GTCTTGGATTTTAGCCTTGACGTTGTCGATAGTATCAGAACTCTCGACCTCCAGAGTGAT 755
Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
|| || || || | ||| || || || ||||||||
Sbjct 754 GGTCTTCCCCGTAAGGGTCTTGACGAAGATCTGCAT 719
>seq19370
Length=533
Score = 116 bits (128), Expect = 3e-21
Identities = 155/213 (73%), Gaps = 2/213 (1%)
Strand=Plus/Minus
Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619
|||||||| | | |||||| | || || || |||||||||||||| || || || ||
Sbjct 212 CCTCCCCTAAGCCTCAGCACAAGGTGCAGTGTAGATTCTTTTTGAATATTGTAGTCGGCC 153
Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679
| ||| || ||| ||||| ||||| || || | ||||| || ||||||||||| ||
Sbjct 152 AAGGTACGGCCATCCTCGAGCTGTTTTCCGGCGAAGATCAACCTCTGCTGATCCGGAGGG 93
Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738
|| || || |||||||| |||||| | |||||| | || | ||||| || ||
Sbjct 92 ATGCCTTCCTTGTCTTG-AATTTTGGCCTTGACATTGTCGATGGTGTCGCTGCTCTCGAC 34
Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTT 29771
|| ||||| || || ||||| |||| ||||||
Sbjct 33 CTCGAGAGTGATGGTCTTGCCGGTTAGGGTTTT 1
>seq189
Length=4153236
Score = 107 bits (118), Expect = 1e-18
Identities = 154/216 (71%), Gaps = 1/216 (0%)
Strand=Plus/Minus
Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633
|| ||| | |||||| ||||| || |||| |||||| || || | | ||| | |||
Sbjct 1285428 CAACACAAGATGAAGAGTGGACTCCTTTTAAATGTTGTAGTCAGACAAGGTACATCCATC 1285369
Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693
|| ||||| ||||||||| | ||| |||||||||||| || ||||| || || || ||
Sbjct 1285368 TTCCAGTTGCTTGCCAGCAAAG-TCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 1285310
Query 29694 TTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753
|| | || ||| ||| ||||| || || || |||| || ||||||| || ||
Sbjct 1285309 CTGGATCTTGGCTTTTACATTTTCTCTTGTATCTGAGGGTTCAACCTCAAGAGGGATGGT 1285250
Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789
|| ||||| | ||||| | || |||||||| ||
Sbjct 1285249 CTTCCCAGTAAGGGTTTCCATGAAAATCTGCATCTT 1285214
>seq671
Length=818080
Score = 105 bits (116), Expect = 5e-18
Identities = 153/216 (71%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633
|| ||||| |||||| ||||| || ||||||||||| || || | | || | ||||
Sbjct 168628 CAACACCAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACATCAATC 168569
Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693
|| || || ||||||||| | |||| |||||||||| | || ||||| || || || ||
Sbjct 168568 TTCCAGCTGCTTGCCAGCAAAGATCAGTCTTTGCTGAGCAGGAGGAATTCCTTCCTTATC 168509
Query 29694 TTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753
|| || || | | |||||| || | || |||| || ||||| || || ||
Sbjct 168508 CTGGGTCTTGGCCTTTATATTTTCTATTGTACCCGAGGGTTCAACCTCAAGGGTGATGGT 168449
Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789
|| ||||| | |||||| || || | |||||| ||
Sbjct 168448 CTTCCCAGTAAGGGTTTTCACGAAAAGCTGCATCTT 168413
>seq142
Length=3748655
Score = 100 bits (110), Expect = 2e-16
Identities = 155/218 (71%), Gaps = 4/218 (2%)
Strand=Plus/Minus
Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633
|| ||| | |||||| ||||| || ||||||||||| || || | | || || |||
Sbjct 2343171 CAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCTATC 2343112
Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693
|| ||| ||||||||| | ||| |||||| | ||| || ||||| || ||||| ||
Sbjct 2343111 TTC--GTTTCTTGCCAGCAAAGCTCAGTCTTTGTTAATCAGGAGGAATTCCTTCTTTATC 2343054
Query 29694 TTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAG 29752
|| | || || || ||| |||||| || || | |||| || |||||||| || |
Sbjct 2343053 CTG-GGTCTTGGTCTTTACATTTTCTATTGTATCCAAGGGTTCAACCTCAAGAGTGATGG 2342995
Query 29753 TTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTTA 29790
||| | ||| | |||||| || || ||||| || |||
Sbjct 2342994 ATTTCCAAGTAAGGGTTTTCACGAAAATCTGTATCTTA 2342957
>seq25626
Length=405
Score = 93.3 bits (102), Expect = 3e-14
Identities = 141/198 (71%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 29590 GTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCA 29649
|| || || || |||||||| || || || | |||||| || || || || || ||
Sbjct 326 GTCGACTCCTTCTGAATGTTGTAGTCGGCTAAGGTGCGGCCGTCTTCAAGCTGCTTCCCG 267
Query 29650 GCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG-TTT 29708
|| | |||||||| ||||| ||||| ||||||||||| ||||| || ||| || | ||
Sbjct 266 GCGAAGATCAATCTCTGCTGGTCCGGAGGAATACCCTCCTTGTCCTG-AATCTTAGCCTT 208
Query 29709 GACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGT 29768
||| | || | ||||| || || || || | ||| ||||| || || || | ||
Sbjct 207 GACGTTATCAATGGTGTCTGAGCTCTCAACCTCCAAAGTAATAGTCTTTCCGGTGAGAGT 148
Query 29769 TTTAACAAATATCTGCAT 29786
|| ||||| ||||||||
Sbjct 147 CTTCACAAAGATCTGCAT 130
>seq342
Length=1079620
Score = 87.8 bits (96), Expect = 1e-12
Identities = 121/168 (72%), Gaps = 1/168 (1%)
Strand=Plus/Minus
Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619
||||||||||| ||||| |||| || || ||||| || || || ||||| || | |
Sbjct 690145 CCTCCCCTCAAGCGCAGGACCAG-TGCAGAGTGGACTCCTTCTGGATGTTGTAGTTGGAC 690087
Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679
| ||||| ||| || || ||||| |||||| | | | | || ||||| || || ||
Sbjct 690086 AGAGTGCGTCCATCTTCCAGCTGTTTCCCAGCAAAGAGCTACCTCTGCTGGTCAGGGGGG 690027
Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCA 29727
|| |||||||||||||| | ||| |||||| | || | ||||||
Sbjct 690026 ATGCCCTCTTTGTCTTGGATTTTGGCCTTGACATTCTCGATGGTGTCA 689979
>seq419
Length=824084
Score = 86.0 bits (94), Expect = 5e-12
Identities = 150/217 (69%), Gaps = 1/217 (0%)
Strand=Plus/Minus
Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633
|| ||| | || ||| ||||| || ||||||||||| || || | | ||| | |||
Sbjct 83740 CAACACAAGATAAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACACAGTGTGTCCATC 83681
Query 29634 -ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGT 29692
|| ||||| ||||||||| | |||| ||| | | |||| || ||||| | || || |
Sbjct 83680 TTTCCAGTTGCTTGCCAGCAAAGATCAGTCTGTACAGATCAGGAGGAATTTCTTCCTTAT 83621
Query 29693 CTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAG 29752
| || | || || ||| ||||| || || || |||| || || || || || |
Sbjct 83620 CCTGGATCTTGGCCTTTACATTTTCTGTTGTATCCGAGGGTTCAACCTCGAGGGTGATGG 83561
Query 29753 TTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789
| || ||||| | |||||| || || | |||||| ||
Sbjct 83560 TCTTCCCAGTAAGGGTTTTCACGAAAACCTGCATCTT 83524
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 384921362839899
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