Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04] 63,439 sequences; 2,073,344,508 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq29432 104 2e-17 seq10281 102 8e-17 seq21504 87.8 2e-12 seq48301 82.4 7e-11 >seq29432 Length=351 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 ||||||| | | ||| || | ||||| || |||||||| || |||||||| || | Sbjct 112 CCTCCTCTGAGCCTCAACACAAGATGAAGCGTGGATTCTTTCTGGATGTTGTAGTCAGCC 171 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | || | | ||||||||| ||||| ||||| |||||| || |||||||| ||||| Sbjct 172 AAAGTACGCCCGTCTTCGAGCTGTTTTCCAGCGAAGATCAATCGCTGCTGATCCGGAGGG 231 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || ||||||||||| || || || | | || | ||||| | || || || Sbjct 232 ATTCCTTCTTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTGTCAGAGGACTCGACC 291 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || | || | ||||||||||| | ||||| ||||| || ||||| Sbjct 292 TCGAGGGTGATGGTCTTGCCGGTTAGGGTTTTCACGAAGATCTGCAT 338 >seq10281 Length=966 Score = 102 bits (112), Expect = 8e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 137184 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 137243 ||| || || | |||||| || || |||| ||||| || || || |||||||| || Sbjct 718 GCCACCACGGAGACGCAAGACCAAGTGAAGCGTAGACTCCTTCTGGATGTTGTAGTCAGC 659 Query 137244 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 || || | ||||||||| || || || ||| |||||| | |||||||| || || Sbjct 658 CAAAGTCCGGCCGTCTTCGAGCTGCTTTCCTGCAAAGATCAATCTCTGCTGATCCGGTGG 599 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363 |||||||||||||| ||||| ||| | | || | || || | | || || Sbjct 598 GATGCCTTCTTTGTCTTGGATTTTGGCTTTCACGTTGTCGATGGTATCAGAGCTCTCCAC 539 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 || | ||| | |||||| || ||||| ||||| || || ||||||||| Sbjct 538 CTCCAAAGTAATCGTCTTCCCCGTCAAGGTTTTAACAAAGATTTGCATA 490 >seq21504 Length=484 Score = 87.8 bits (96), Expect = 2e-12 Identities = 164/235 (70%), Gaps = 6/235 (3%) Strand=Plus/Minus Query 137184 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 137243 ||| || || | |||||| || || |||| ||| || ||||| || |||||||| || Sbjct 242 GCCACCACGGAGACGCAAGACCAAGTGAAGTGTTGACTCTTTCTGGATGTTGTAGTCAGC 183 Query 137244 CATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 137302 | || | || | ||||||||||| || || || |||| | | |||||| || || | Sbjct 182 AAGAGTTCGTCCA-TCTTCGAGTTGCTTTCCGGCGAAGATTAACCTTTGCTGGTCCGGTG 124 Query 137303 GTATGCCTTCTTTGT-CGGTAATTTTTTGTTTT-AGCTGTTCCACCGTGTCTGTGGGTTC 137360 | |||||||| |||| | ||| | || ||||| | | || | ||||| | | || Sbjct 123 GGATGCCTTCCTTGTCCTGTA--TCTTGGTTTTCACGTTGTCGATAGTGTCGGAGCTCTC 66 Query 137361 TACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 137415 || || | || | |||||| ||||| | ||| || ||||| || |||||| || Sbjct 65 CACCTCGAGGGTGATCGTCTTTCCGGTGAGTGTCTTGACGAAGATCTGCATACCT 11 >seq48301 Length=236 Score = 82.4 bits (90), Expect = 7e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || || || | ||| | ||| || |||| || || || || || |||||||| || | Sbjct 218 CCACCACGAAGACGAAGAACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCAGCC 159 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | ||||| || ||||| || || ||||| |||| ||||||||||| || || || Sbjct 158 AATGTGCGACCATCCTCGAGCTGCTTTCCAGCGAAGATGAGACGTTGCTGGTCCGGGGGA 99 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || ||||| ||||| || || ||| | | || | || || | | || || Sbjct 98 ATACCTTCCTTGTCCTGGATCTTAGCTTTGACGTTGTCAATAGTATCGGAGCTCTCCACC 39 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAA 137402 |||| ||| | ||||| ||||||||||| || ||||| Sbjct 38 TCAAGAGTGATGGTCTTCCCGGTCAATGTCTTAACGAA 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488156590714800