Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04]
63,439 sequences; 2,073,344,508 total letters
Query= NC_024382.1
Length=137090
Score E
Sequences producing significant alignments: (Bits) Value
seq100 104 2e-17
>seq100
Length=6196908
Score = 104 bits (114), Expect = 2e-17
Identities = 466/719 (65%), Gaps = 56/719 (8%)
Strand=Plus/Plus
Query 1067 ATGCCCACAGCTCTAGCTTCTGGTCTGAAAAAGAGTAGGTTTCTCTTGAGAGTTAAGGAA 1126
||| ||||||| |||||||| |||||||||| ||| || || | | | | ||||
Sbjct 5340318 ATGTCCACAGCCCTAGCTTCAGGTCTGAAAA-GAGCCCCTT---CTCGGG-GCCATGGAA 5340372
Query 1127 GGCATTTTAAAGAAAAGGCTTAGaaaaaaaaTCTGGTGGGCACTTACATATTCTTCCATA 1186
||||||||||||||| || || ||||| ||||||| |||||||||| | | ||||| |
Sbjct 5340373 GGCATTTTAAAGAAATGGTTTGGAAAAGAAATCTGTAGGGCACTTACGTGGTTTTCCAAA 5340432
Query 1187 AGTTTTGAAAATGAGAACTGTAGTTCTGTGATTACAGCTGATTGTATGTC-CCGT-GGTA 1244
||||| | || | ||| | ||| || ||| | ||| || | || |
Sbjct 5340433 AGTTTCTTAGATAGGGACTTCAATTCCTTGCTTATCCTTCCTTG---CTCACAGTCACTG 5340489
Query 1245 GTGGATGGCCGTGGGA-GGAGAGCAAGGCTCCGGAACAGCAGAGCAGGAACAGGGCAAGC 1303
|||| || | |||| ||| ||| | | ||| ||||||||||||||||||||||||
Sbjct 5340490 GTGGGTGCCACAGGGAGGGACAGCGAAGATCCCACGCAGCAGAGCAGGAACAGGGCAAGC 5340549
Query 1304 CCTGAAGATTTTGTAAAAATAGA-----GTAATGCCCACACACCCCCA---CCTGCCC-C 1354
| || | || | ||| ||| | | ||||| ||| || ||| ||| |
Sbjct 5340550 TTGGCAGGTCCTGGAGAAAGAGAAGATGCTGAGGCCCAAGGACCGACACTCCCTCCCCAC 5340609
Query 1355 ATACCTT-AACCTG--CCCAAGCTTTCACCACCGAAGCTGTGCCGGACTGAGCCCC-ATC 1410
| ||| |||||| | | || | || | | | | |||||||| |
Sbjct 5340610 CCAGCTTCAACCTGTTAGCCATTGTTGAGCAACCA-------CTAGGTTGAGCCCCTCTA 5340662
Query 1411 CAGTCTTTCTCTTTGTCTAGGGAAACTCGACCGCACCCACCAGCATCAATGGCTGTAGGA 1470
|||||| |||| ||||| | || || ||| ||| || | | ||| | ||||
Sbjct 5340663 GAGTCTTCCTCTCTGTCTGGTGAGACAAGACTCTGGCCA--AGAA--ACGGGCAGCAGGA 5340718
Query 1471 CCTATCGATACCTGAGGGGGATACTATAGCAGGAGAGAGCGAGGCCGCCGCTTTGGCAAC 1530
| | | |||||| | | || || || | || |||| || | |||| ||| |
Sbjct 5340719 GC-AGTGGTACCTGTGTGAGAGACCATGGTGACAGGGAGCAGAGC--CTGCTTCGGCTGC 5340775
Query 1531 AGCTGCTAGAGTGAGATGTGCTCGCTATACTTTTAGGGAACTGTATATAAAGGGCTAGTT 1590
|||| || | || |||||| |||| || | | | | |||||||||| | | |
Sbjct 5340776 AGCTTCTTGCGTCTGATGTGTTCGCCATGGTCTCCAGCA--GATATATAAAGGCCCGGCT 5340833
Query 1591 GTAAGGAGGAGCACTAAAAGTACCGCCCACGGTAAAGTCATTACT-----------CAGA 1639
| |||| || || || || ||||||| || || ||||| || ||||
Sbjct 5340834 ATGAGGAAGAACAACCAATGTCCCGCCCATGGCAAGATCATTGCTCAGCGTTTCTCCAGA 5340893
Query 1640 AAACA-TTTCAAATTTATGCCATCTGATCTTGGATAAAAGCAAGGCTCGAAGGAAA---T 1695
||||| | ||||| || ||| | | | ||| | | |||| |||| |||||||| |
Sbjct 5340894 AAACACTGTCAAAATTCTGCTACCCAAGTCTGGGTGACAGCAGGGCTGGAAGGAAATGCT 5340953
Query 1696 GAAGTTACCCTTAAGATGGGCAGATGCTTGACGCACTGCATATACACACCGGGCACCCA 1754
|| |||||||| ||| ||||||||||| |||| || | || | ||||| ||||||| ||
Sbjct 5340954 GAGGTTACCCTCAAGGTGGGCAGATGCCTGACTCAGTACAGACACACA-CGGGCACACA 5341011
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 438212227402000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |