Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04] 63,439 sequences; 2,073,344,508 total letters Query= NC_024382.1 Length=137090 Score E Sequences producing significant alignments: (Bits) Value seq100 104 2e-17 >seq100 Length=6196908 Score = 104 bits (114), Expect = 2e-17 Identities = 466/719 (65%), Gaps = 56/719 (8%) Strand=Plus/Plus Query 1067 ATGCCCACAGCTCTAGCTTCTGGTCTGAAAAAGAGTAGGTTTCTCTTGAGAGTTAAGGAA 1126 ||| ||||||| |||||||| |||||||||| ||| || || | | | | |||| Sbjct 5340318 ATGTCCACAGCCCTAGCTTCAGGTCTGAAAA-GAGCCCCTT---CTCGGG-GCCATGGAA 5340372 Query 1127 GGCATTTTAAAGAAAAGGCTTAGaaaaaaaaTCTGGTGGGCACTTACATATTCTTCCATA 1186 ||||||||||||||| || || ||||| ||||||| |||||||||| | | ||||| | Sbjct 5340373 GGCATTTTAAAGAAATGGTTTGGAAAAGAAATCTGTAGGGCACTTACGTGGTTTTCCAAA 5340432 Query 1187 AGTTTTGAAAATGAGAACTGTAGTTCTGTGATTACAGCTGATTGTATGTC-CCGT-GGTA 1244 ||||| | || | ||| | ||| || ||| | ||| || | || | Sbjct 5340433 AGTTTCTTAGATAGGGACTTCAATTCCTTGCTTATCCTTCCTTG---CTCACAGTCACTG 5340489 Query 1245 GTGGATGGCCGTGGGA-GGAGAGCAAGGCTCCGGAACAGCAGAGCAGGAACAGGGCAAGC 1303 |||| || | |||| ||| ||| | | ||| |||||||||||||||||||||||| Sbjct 5340490 GTGGGTGCCACAGGGAGGGACAGCGAAGATCCCACGCAGCAGAGCAGGAACAGGGCAAGC 5340549 Query 1304 CCTGAAGATTTTGTAAAAATAGA-----GTAATGCCCACACACCCCCA---CCTGCCC-C 1354 | || | || | ||| ||| | | ||||| ||| || ||| ||| | Sbjct 5340550 TTGGCAGGTCCTGGAGAAAGAGAAGATGCTGAGGCCCAAGGACCGACACTCCCTCCCCAC 5340609 Query 1355 ATACCTT-AACCTG--CCCAAGCTTTCACCACCGAAGCTGTGCCGGACTGAGCCCC-ATC 1410 | ||| |||||| | | || | || | | | | |||||||| | Sbjct 5340610 CCAGCTTCAACCTGTTAGCCATTGTTGAGCAACCA-------CTAGGTTGAGCCCCTCTA 5340662 Query 1411 CAGTCTTTCTCTTTGTCTAGGGAAACTCGACCGCACCCACCAGCATCAATGGCTGTAGGA 1470 |||||| |||| ||||| | || || ||| ||| || | | ||| | |||| Sbjct 5340663 GAGTCTTCCTCTCTGTCTGGTGAGACAAGACTCTGGCCA--AGAA--ACGGGCAGCAGGA 5340718 Query 1471 CCTATCGATACCTGAGGGGGATACTATAGCAGGAGAGAGCGAGGCCGCCGCTTTGGCAAC 1530 | | | |||||| | | || || || | || |||| || | |||| ||| | Sbjct 5340719 GC-AGTGGTACCTGTGTGAGAGACCATGGTGACAGGGAGCAGAGC--CTGCTTCGGCTGC 5340775 Query 1531 AGCTGCTAGAGTGAGATGTGCTCGCTATACTTTTAGGGAACTGTATATAAAGGGCTAGTT 1590 |||| || | || |||||| |||| || | | | | |||||||||| | | | Sbjct 5340776 AGCTTCTTGCGTCTGATGTGTTCGCCATGGTCTCCAGCA--GATATATAAAGGCCCGGCT 5340833 Query 1591 GTAAGGAGGAGCACTAAAAGTACCGCCCACGGTAAAGTCATTACT-----------CAGA 1639 | |||| || || || || ||||||| || || ||||| || |||| Sbjct 5340834 ATGAGGAAGAACAACCAATGTCCCGCCCATGGCAAGATCATTGCTCAGCGTTTCTCCAGA 5340893 Query 1640 AAACA-TTTCAAATTTATGCCATCTGATCTTGGATAAAAGCAAGGCTCGAAGGAAA---T 1695 ||||| | ||||| || ||| | | | ||| | | |||| |||| |||||||| | Sbjct 5340894 AAACACTGTCAAAATTCTGCTACCCAAGTCTGGGTGACAGCAGGGCTGGAAGGAAATGCT 5340953 Query 1696 GAAGTTACCCTTAAGATGGGCAGATGCTTGACGCACTGCATATACACACCGGGCACCCA 1754 || |||||||| ||| ||||||||||| |||| || | || | ||||| ||||||| || Sbjct 5340954 GAGGTTACCCTCAAGGTGGGCAGATGCCTGACTCAGTACAGACACACA-CGGGCACACA 5341011 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 438212227402000