Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04]
63,439 sequences; 2,073,344,508 total letters
Query= NC_024696.1
Length=180800
Score E
Sequences producing significant alignments: (Bits) Value
seq123 226 3e-54
seq107 170 2e-37
>seq123
Length=7988377
Score = 226 bits (250), Expect = 3e-54
Identities = 610/923 (66%), Gaps = 19/923 (2%)
Strand=Plus/Minus
Query 162059 CCAGGGACTTATGTCGGAGATACTCGTCTAGACACTGGACCGCGAACACGTCTCGTTCCT 162118
|||||| ||||| | |||| ||| || | |||||||| || || | ||| ||
Sbjct 3432403 CCAGGGCTTTATGCCTCAGATGCTCATCCAAACACTGGATGGCAAAGAGGTCGATGTCTG 3432344
Query 162119 CATCGAACTTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCG 162178
|| ||||| || || |||| ||| ||| || ||| ||||| || | || || |
Sbjct 3432343 TGTCAAACTTATTAGCAAACAAGTGGTGC---TTGCGCAACATCCAGTTCAAGTCACCTG 3432287
Query 162179 ATCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCAT 162238
||| || || ||||| || || | ||| || ||| |||| ||||| || |||| || |
Sbjct 3432286 CTCCAAAAACACACACAGAGCGTATGTGGACACCGTTGCAGGGCGGGTAGGGGGCGCCCT 3432227
Query 162239 CGTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGG 162298
| ||||| || || |||| |||||||| || ||||||| || || ||||||||||
Sbjct 3432226 TGGAAACATCACCTTCAAAGTACTGCCACTTGACAAACCTAGCAATTGCATGCATGTCGG 3432167
Query 162299 AGGTGTCGTACTTGTACACTGACGG-CACGGCTCCAGGAACACCCGGCAGTCTCTGTAGA 162357
| |||| ||||| | || | || || | || ||||| | || | ||||| | |
Sbjct 3432166 ACATGTCATACTTATGG-CTTAGGGACAGTGAGCCTGGAACTTCAGGGATCCTCTGAATA 3432108
Query 162358 GTAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTG 162417
|| ||||| || | || ||||| || || || || || | ||||||||| |||| |
Sbjct 3432107 GTGGCCCAGAGATACTCATCTGGGCTGTATGTGTCTTTTGCCCACTCCATAAACTTTTGG 3432048
Query 162418 ACCGTTTTATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCTA 162477
| ||| || | ||| | || || || ||| | || | ||| || || ||
Sbjct 3432047 ATTTTTTCATTCTCTAGCACATACTCCACATAATTCCTACTGACCACAAAATAGGCACTG 3431988
Query 162478 CCAGAAAACACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACTACC 162537
|| ||||||| ||| | | |||||| | |||||| || ||||| |
Sbjct 3431987 CCTGAAAACAGAGGTGTTTCAAGAGGAGGCTGTAGTTTGTCAGTCCCTGTGTTTGTCAGT 3431928
Query 162538 ATTCCCTCTACGACCACGTGTCT----CTTCCTCCACCTGGCCATCTTACTGGTAGACGG 162593
|||| | || || | | || | ||| ||||||| | | ||| ||| | |
Sbjct 3431927 TTTCCAT-TA--ACAATG-GTATAGTGCTTTTTCCACCTTTCTTTTTTATTGGATGGCAT 3431872
Query 162594 GTGTTCGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAG 162653
| || || ||||| |||| ||| || | ||| || | | || || || ||
Sbjct 3431871 TTTCTCAGTTTCTAGGTTGTTTTCTCCCTTTAACGACTTGAGTTTCCCAACAATTTCCAG 3431812
Query 162654 ATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCT 162713
||||| |||| ||||| || | || || ||||| || | || ||||| | | ||
Sbjct 3431811 GTTGGTTTTAATAGGAAAATCCATACCACAAAGATTTATCAAGTACTTCCAGTCTGCACT 3431752
Query 162714 GAGTCCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTA 162773
| || ||| || ||||| | |||||| ||||||||||| || ||||||||||| |||||
Sbjct 3431751 CATTCGGTAGAGGTCCTGCATACAGTTGAGATCGGCCTGAACCCGACTCCACGATGCGTA 3431692
Query 162774 CACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCAT 162833
||| || |||||| | | |||| |||||||| ||| |||||| || | || || |
Sbjct 3431691 CACCACAGTCTCCAGCTGACTGGCCACAAAGACGTTGCTGAAACAGGATGCAATGCCAAG 3431632
Query 162834 CACGGCCAGTGAGAA---CATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATT 162890
|| | ||| | || ||| || | ||| | || || || | ||| || | |||
Sbjct 3431631 TACCG-CAGCCAAAAAGGAATC--CTCTGATTTTTTGTCCACATGAATGCAATAGAAATT 3431575
Query 162891 CTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCAC 162950
|||||| ||||||||||||| | || || | ||| || || || || || |||||
Sbjct 3431574 CTGAGGCATATAGATGGCCCTCAAGAGCCTGTCAAGCATTTCAATTTTGTGATGAACCAC 3431515
Query 162951 GATAGAATACGCTATGGGGAACT 162973
|| ||||| ||||| || ||||
Sbjct 3431514 TATGGAATATGCTATTGGAAACT 3431492
>seq107
Length=5366022
Score = 170 bits (188), Expect = 2e-37
Identities = 231/321 (72%), Gaps = 2/321 (1%)
Strand=Plus/Plus
Query 171772 ATAGAGTGTCAGACAGGTCTTACCCGATATTTTTCCGGACCCAAAAGTATTAAACAAACA 171831
|||||||| || |||| || || | | || || || ||||| |||||||| | ||
Sbjct 5323578 ATAGAGTG--AGGCAGGCTTTTCCGAAGACATTCCCAGAACCAAATGTATTAAAGAGGCA 5323635
Query 171832 CATAAAACAGCCTTCGTCCTCCACGGTGGTGTTCCAAAAAGTCAATGTAGAATTTCTGAG 171891
|||| || || ||||||| |||||| ||||| || || | || || || |||
Sbjct 5323636 TTGGTAACATCCCTCATCCTCCAGGGTGGTATTCCAGAAGGTAATGGTTGAGTTCTGGAG 5323695
Query 171892 TCCGAGTTGCGTAATGTTCACCCGGTCCTTGTACGGAGGCTGGACGACAACACCGTGATT 171951
||| || | || ||||| | | |||||| || | |||||||| ||||| || ||
Sbjct 5323696 TCCCAGCTCAGTGATGTTGATCTTGTCCTTATAGGCTGGCTGGACCACAACCCCATGGGA 5323755
Query 171952 CTCGCTGAACGTGGCCATGTTTTCGGGGCTCGTAGCCTTTATCTTCTGCCACGTTACTAT 172011
|| |||||| ||| |||||||||| ||||| |||||||| || ||||||||||| || |
Sbjct 5323756 CTTGCTGAAGGTGACCATGTTTTCTGGGCTAGTAGCCTTGATTTTCTGCCACGTCACAAC 5323815
Query 172012 TAAAACTTCTTTGTCGGTTTGAAGAGAGCATCTTAAAGAAGCAGGTGTGTTCAATAATTC 172071
|| ||||| | ||| |||||||||| ||| |||||||||||||||| | |
Sbjct 5323816 CAAGACTTCCCGGGAAGTTCCCAGAGAGCATCGTAAGGAAGCAGGTGTGTTCAGCAGCTT 5323875
Query 172072 CCTTTCGTCTTGCGTTACCAC 172092
|||| ||||| || |||||
Sbjct 5323876 TTTTTCATCTTGAGTCACCAC 5323896
Score = 114 bits (126), Expect = 1e-20
Identities = 174/247 (70%), Gaps = 3/247 (1%)
Strand=Plus/Plus
Query 171503 ACAGTTTGTCTGATGTCTGTTACAGTCCCCAAGTGTAAGACTTTGCATATCACCTCCTCG 171562
|||||||| |||| | || |||||||| | ||| | || | ||| | ||||| |
Sbjct 5321066 ACAGTTTGCCTGAAGCTGGTCACAGTCCCTAGGTGCAGCACCTGGCAGACGACCTCTT-- 5321123
Query 171563 TTTCCCACTTGACTTTTAGGATCTTTTACTTGAAGAATGCTAGTAACAGATGTAGTCCCG 171622
||||||| ||||| || || ||||| || || || | || || |||||||| |||||
Sbjct 5321124 -TTCCCACCTGACTCTTGGGGTCTTTGACATGGAGGACACTGGTGACAGATGTGGTCCCA 5321182
Query 171623 TTACGATGTAGAACGGTTTTAGTACTATTTTCTATTCCGGATCCGGCAACTTTCCAAAAT 171682
|| ||||| || | | |||||| || || ||||| || || | || ||||| |
Sbjct 5321183 TTGGGATGTGAAAGAATCTCAGTACTGTTGTCCATTCCTGACCCAGAGACCTTCCAGGAG 5321242
Query 171683 ATAACAGGAGCTGGTCTAGCAGTAGCAGAGCAAGTTATGTTTAATCCATCTTCGAAGAAC 171742
|| ||||| ||||| | ||| | ||||||||||| || |||| || || |||||
Sbjct 5321243 ATCACAGGGGCTGGGCGGGCATTGGCAGAGCAAGTGATATTTAGGTGGTCGTCAAAGAAT 5321302
Query 171743 TCATAGT 171749
| |||||
Sbjct 5321303 TTATAGT 5321309
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 577973310654400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |