Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04] 63,439 sequences; 2,073,344,508 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq123 226 3e-54 seq107 170 2e-37 >seq123 Length=7988377 Score = 226 bits (250), Expect = 3e-54 Identities = 610/923 (66%), Gaps = 19/923 (2%) Strand=Plus/Minus Query 162059 CCAGGGACTTATGTCGGAGATACTCGTCTAGACACTGGACCGCGAACACGTCTCGTTCCT 162118 |||||| ||||| | |||| ||| || | |||||||| || || | ||| || Sbjct 3432403 CCAGGGCTTTATGCCTCAGATGCTCATCCAAACACTGGATGGCAAAGAGGTCGATGTCTG 3432344 Query 162119 CATCGAACTTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCG 162178 || ||||| || || |||| ||| ||| || ||| ||||| || | || || | Sbjct 3432343 TGTCAAACTTATTAGCAAACAAGTGGTGC---TTGCGCAACATCCAGTTCAAGTCACCTG 3432287 Query 162179 ATCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCAT 162238 ||| || || ||||| || || | ||| || ||| |||| ||||| || |||| || | Sbjct 3432286 CTCCAAAAACACACACAGAGCGTATGTGGACACCGTTGCAGGGCGGGTAGGGGGCGCCCT 3432227 Query 162239 CGTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGG 162298 | ||||| || || |||| |||||||| || ||||||| || || |||||||||| Sbjct 3432226 TGGAAACATCACCTTCAAAGTACTGCCACTTGACAAACCTAGCAATTGCATGCATGTCGG 3432167 Query 162299 AGGTGTCGTACTTGTACACTGACGG-CACGGCTCCAGGAACACCCGGCAGTCTCTGTAGA 162357 | |||| ||||| | || | || || | || ||||| | || | ||||| | | Sbjct 3432166 ACATGTCATACTTATGG-CTTAGGGACAGTGAGCCTGGAACTTCAGGGATCCTCTGAATA 3432108 Query 162358 GTAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTG 162417 || ||||| || | || ||||| || || || || || | ||||||||| |||| | Sbjct 3432107 GTGGCCCAGAGATACTCATCTGGGCTGTATGTGTCTTTTGCCCACTCCATAAACTTTTGG 3432048 Query 162418 ACCGTTTTATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCTA 162477 | ||| || | ||| | || || || ||| | || | ||| || || || Sbjct 3432047 ATTTTTTCATTCTCTAGCACATACTCCACATAATTCCTACTGACCACAAAATAGGCACTG 3431988 Query 162478 CCAGAAAACACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACTACC 162537 || ||||||| ||| | | |||||| | |||||| || ||||| | Sbjct 3431987 CCTGAAAACAGAGGTGTTTCAAGAGGAGGCTGTAGTTTGTCAGTCCCTGTGTTTGTCAGT 3431928 Query 162538 ATTCCCTCTACGACCACGTGTCT----CTTCCTCCACCTGGCCATCTTACTGGTAGACGG 162593 |||| | || || | | || | ||| ||||||| | | ||| ||| | | Sbjct 3431927 TTTCCAT-TA--ACAATG-GTATAGTGCTTTTTCCACCTTTCTTTTTTATTGGATGGCAT 3431872 Query 162594 GTGTTCGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAG 162653 | || || ||||| |||| ||| || | ||| || | | || || || || Sbjct 3431871 TTTCTCAGTTTCTAGGTTGTTTTCTCCCTTTAACGACTTGAGTTTCCCAACAATTTCCAG 3431812 Query 162654 ATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCT 162713 ||||| |||| ||||| || | || || ||||| || | || ||||| | | || Sbjct 3431811 GTTGGTTTTAATAGGAAAATCCATACCACAAAGATTTATCAAGTACTTCCAGTCTGCACT 3431752 Query 162714 GAGTCCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTA 162773 | || ||| || ||||| | |||||| ||||||||||| || ||||||||||| ||||| Sbjct 3431751 CATTCGGTAGAGGTCCTGCATACAGTTGAGATCGGCCTGAACCCGACTCCACGATGCGTA 3431692 Query 162774 CACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCAT 162833 ||| || |||||| | | |||| |||||||| ||| |||||| || | || || | Sbjct 3431691 CACCACAGTCTCCAGCTGACTGGCCACAAAGACGTTGCTGAAACAGGATGCAATGCCAAG 3431632 Query 162834 CACGGCCAGTGAGAA---CATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATT 162890 || | ||| | || ||| || | ||| | || || || | ||| || | ||| Sbjct 3431631 TACCG-CAGCCAAAAAGGAATC--CTCTGATTTTTTGTCCACATGAATGCAATAGAAATT 3431575 Query 162891 CTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCAC 162950 |||||| ||||||||||||| | || || | ||| || || || || || ||||| Sbjct 3431574 CTGAGGCATATAGATGGCCCTCAAGAGCCTGTCAAGCATTTCAATTTTGTGATGAACCAC 3431515 Query 162951 GATAGAATACGCTATGGGGAACT 162973 || ||||| ||||| || |||| Sbjct 3431514 TATGGAATATGCTATTGGAAACT 3431492 >seq107 Length=5366022 Score = 170 bits (188), Expect = 2e-37 Identities = 231/321 (72%), Gaps = 2/321 (1%) Strand=Plus/Plus Query 171772 ATAGAGTGTCAGACAGGTCTTACCCGATATTTTTCCGGACCCAAAAGTATTAAACAAACA 171831 |||||||| || |||| || || | | || || || ||||| |||||||| | || Sbjct 5323578 ATAGAGTG--AGGCAGGCTTTTCCGAAGACATTCCCAGAACCAAATGTATTAAAGAGGCA 5323635 Query 171832 CATAAAACAGCCTTCGTCCTCCACGGTGGTGTTCCAAAAAGTCAATGTAGAATTTCTGAG 171891 |||| || || ||||||| |||||| ||||| || || | || || || ||| Sbjct 5323636 TTGGTAACATCCCTCATCCTCCAGGGTGGTATTCCAGAAGGTAATGGTTGAGTTCTGGAG 5323695 Query 171892 TCCGAGTTGCGTAATGTTCACCCGGTCCTTGTACGGAGGCTGGACGACAACACCGTGATT 171951 ||| || | || ||||| | | |||||| || | |||||||| ||||| || || Sbjct 5323696 TCCCAGCTCAGTGATGTTGATCTTGTCCTTATAGGCTGGCTGGACCACAACCCCATGGGA 5323755 Query 171952 CTCGCTGAACGTGGCCATGTTTTCGGGGCTCGTAGCCTTTATCTTCTGCCACGTTACTAT 172011 || |||||| ||| |||||||||| ||||| |||||||| || ||||||||||| || | Sbjct 5323756 CTTGCTGAAGGTGACCATGTTTTCTGGGCTAGTAGCCTTGATTTTCTGCCACGTCACAAC 5323815 Query 172012 TAAAACTTCTTTGTCGGTTTGAAGAGAGCATCTTAAAGAAGCAGGTGTGTTCAATAATTC 172071 || ||||| | ||| |||||||||| ||| |||||||||||||||| | | Sbjct 5323816 CAAGACTTCCCGGGAAGTTCCCAGAGAGCATCGTAAGGAAGCAGGTGTGTTCAGCAGCTT 5323875 Query 172072 CCTTTCGTCTTGCGTTACCAC 172092 |||| ||||| || ||||| Sbjct 5323876 TTTTTCATCTTGAGTCACCAC 5323896 Score = 114 bits (126), Expect = 1e-20 Identities = 174/247 (70%), Gaps = 3/247 (1%) Strand=Plus/Plus Query 171503 ACAGTTTGTCTGATGTCTGTTACAGTCCCCAAGTGTAAGACTTTGCATATCACCTCCTCG 171562 |||||||| |||| | || |||||||| | ||| | || | ||| | ||||| | Sbjct 5321066 ACAGTTTGCCTGAAGCTGGTCACAGTCCCTAGGTGCAGCACCTGGCAGACGACCTCTT-- 5321123 Query 171563 TTTCCCACTTGACTTTTAGGATCTTTTACTTGAAGAATGCTAGTAACAGATGTAGTCCCG 171622 ||||||| ||||| || || ||||| || || || | || || |||||||| ||||| Sbjct 5321124 -TTCCCACCTGACTCTTGGGGTCTTTGACATGGAGGACACTGGTGACAGATGTGGTCCCA 5321182 Query 171623 TTACGATGTAGAACGGTTTTAGTACTATTTTCTATTCCGGATCCGGCAACTTTCCAAAAT 171682 || ||||| || | | |||||| || || ||||| || || | || ||||| | Sbjct 5321183 TTGGGATGTGAAAGAATCTCAGTACTGTTGTCCATTCCTGACCCAGAGACCTTCCAGGAG 5321242 Query 171683 ATAACAGGAGCTGGTCTAGCAGTAGCAGAGCAAGTTATGTTTAATCCATCTTCGAAGAAC 171742 || ||||| ||||| | ||| | ||||||||||| || |||| || || ||||| Sbjct 5321243 ATCACAGGGGCTGGGCGGGCATTGGCAGAGCAAGTGATATTTAGGTGGTCGTCAAAGAAT 5321302 Query 171743 TCATAGT 171749 | ||||| Sbjct 5321303 TTATAGT 5321309 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577973310654400