Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04]
63,439 sequences; 2,073,344,508 total letters
Query= NC_025257.1
Length=102759
Score E
Sequences producing significant alignments: (Bits) Value
seq273 134 9e-27
seq19201 116 2e-21
seq683 104 2e-17
seq188 100 2e-16
seq29432 93.3 3e-14
seq94 91.5 1e-13
seq10281 87.8 1e-12
seq17446 84.2 1e-11
>seq273
Length=4066651
Score = 134 bits (148), Expect = 9e-27
Identities = 175/238 (74%), Gaps = 3/238 (1%)
Strand=Plus/Plus
Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580
|||| || ||||| || | |||| || |||||| |||||| || |||||||| ||||
Sbjct 887187 CACCTCCCCTCAAGCGCAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCGG 887246
Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640
| || |||||| |||| ||||| ||||| |||||||| ||||| | |||||| || | |
Sbjct 887247 ACAGGGTGCGTCCGTCTTCCAACTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGG 887306
Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699
| | || |||||||| || || || | ||| || | |||||| || | |||
Sbjct 887307 GGATGCCCTCTTTGTCTTGGATCTTGGCCTTGA-CATTCTCGATGGTGTCACTGGGCTCC 887365
Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGT-TGGT 33756
|| || | ||||| || ||||| || || || || |||||||||||||| || ||||
Sbjct 887366 ACCTCCAGGGTGATGGTCTTACCGGTCAAGGTCTTCACAAAGATCTGCATTGTCTGGT 887423
>seq19201
Length=536
Score = 116 bits (128), Expect = 2e-21
Identities = 164/228 (72%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582
|| ||||||| ||| | ||||| || || || ||| || || ||||||||||| | |
Sbjct 279 CCTCCTCTCAGACGGAGAACCAAGTGAAGCGTCGACTCCTTCTGGATGTTGTAATCCGCG 338
Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642
||||| | | |||| |||| || || || || || |||| ||||||||||| | ||
Sbjct 339 AGTGTCCTTCCGTCTTCCAGCTGCTTCCCCGCGAATATCAGCCGCTGCTGATCCGGTGGG 398
Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701
| ||||| ||||| || ||| ||| |||| ||| | |||||| ||||| ||
Sbjct 399 ATTCCTTCCTTGTCCTGGATCTTCGCCTTC-ACATTGTCGATCGTGTCGGACGATTCAAC 457
Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
|| | || ||||| || || |||| ||||| ||||||||||||||
Sbjct 458 CTCTAGGGTTATCGTCTTCCCCGTTAGGGTTTTCACAAAGATCTGCAT 505
>seq683
Length=758919
Score = 104 bits (114), Expect = 2e-17
Identities = 162/229 (71%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581
|||||| | || || | |||||| || |||||| |||||| || ||||| || || ||
Sbjct 117124 ACCACCCCGCAGACAAAGCACCAAGTGCAGAGTGGACTCTTTCTGGATGTTATAGTCTGA 117183
Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641
||| ||||| | || |||| ||||| || |||||||||| | ||||||| || | ||
Sbjct 117184 GAGAGTGCGGCCATCCTCCAGCTGTTTGCCCGCAAAAATCAGATGCTGCTGGTCAGGTGG 117243
Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCACG-GTGTCGCTTGATTCCA 33700
| || || ||||| ||||| ||| | ||| ||| ||||| || | | |
Sbjct 117244 GATGCCCTCCTTGTCTTGGATTTTGGCTTTGA-CATTTTCAATAGTGTCACTGGGCTTGA 117302
Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
| || | ||||| || || || || | ||||| ||||||||||||||
Sbjct 117303 CCTCGAGTGTGATGGTCTTGCCCGTCAGGGTTTTCACAAAGATCTGCAT 117351
>seq188
Length=3215107
Score = 100 bits (110), Expect = 2e-16
Identities = 161/229 (70%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581
|||||| | || | | | |||| | || |||||| |||||| || || || || || ||
Sbjct 2830971 ACCACCCCGCAGATGAAGCACCGAGTGCAGAGTGGACTCTTTCTGGATATTATAGTCTGA 2830912
Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641
||| ||||| | || |||| ||||| || |||||||||| ||||||||| || | ||
Sbjct 2830911 GAGAGTGCGGCCATCCTCCAGCTGTTTGCCCGCAAAAATCAGACGCTGCTGGTCAGGTGG 2830852
Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCACG-GTGTCGCTTGATTCCA 33700
| || || |||| ||||| ||| | ||| ||| ||||| | | | |
Sbjct 2830851 GATGCCCTCCTTGTTTTGGATTTTAGCTTTGA-CATTCTCAATAGTGTCATTGGGCTTGA 2830793
Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
| |||| ||||| || || ||||||| || || ||||||||||||||
Sbjct 2830792 CCTCAAGTGTGATGGTCTTGCCTGTTAGGGTCTTCACAAAGATCTGCAT 2830744
>seq29432
Length=351
Score = 93.3 bits (102), Expect = 3e-14
Identities = 163/235 (69%), Gaps = 2/235 (1%)
Strand=Plus/Plus
Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581
||| ||||| | | ||||| | ||| || ||| ||||| || |||||||| || |
Sbjct 111 ACCTCCTCTGAGCCTCAACACAAGATGAAGCGTGGATTCTTTCTGGATGTTGTAGTCAGC 170
Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641
| || || |||| || | |||||||| || || ||||| ||||||||||| | ||
Sbjct 171 CAAAGTACGCCCGTCTTCGAGCTGTTTTCCAGCGAAGATCAATCGCTGCTGATCCGGAGG 230
Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700
| ||||||||||| || || | | |||| ||| | |||||| || || |
Sbjct 231 GATTCCTTCTTTGTCTTGGATCTT-GGCCTTGACATTGTCGATGGTGTCAGAGGACTCGA 289
Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGTTGG 33755
| || | ||||| || || || |||| ||||| || ||||||||||| ||||
Sbjct 290 CCTCGAGGGTGATGGTCTTGCCGGTTAGGGTTTTCACGAAGATCTGCATCTTTGG 344
>seq94
Length=5588587
Score = 91.5 bits (100), Expect = 1e-13
Identities = 159/229 (69%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581
|||||| | || | | | |||||| || |||||| |||||| || | || || || ||
Sbjct 3280480 ACCACCCCGCAGAAGAAGCACCAAGTGCAGAGTGGACTCTTTCTGGACATTTTAGTCTGA 3280421
Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641
||| |||| | || |||| ||||| ||||||||||||| ||| ||||| || | ||
Sbjct 3280420 GAGAGTGCAGCCATCCTCCATCTGTTTGCCGGCAAAAATCAGACGATGCTGGTCAGGTGG 3280361
Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCA-CGGTGTCGCTTGATTCCA 33700
| || || |||| | ||| | || |||| ||| ||||| || | || |
Sbjct 3280360 GATGCCCTCCTTGTGTTGGACTTT-AGCTTTGACATTCTCAGTAGTGTCACTGGGCTCGA 3280302
Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
| || | ||||| || || ||||| | || || ||||||||||||||
Sbjct 3280301 CCTCGAGTGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 3280253
>seq10281
Length=966
Score = 87.8 bits (96), Expect = 1e-12
Identities = 161/232 (69%), Gaps = 8/232 (3%)
Strand=Plus/Minus
Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582
||||| | | ||| || ||||| || || || ||| || || |||||||| || |
Sbjct 717 CCACCACGGAGACGCAAGACCAAGTGAAGCGTAGACTCCTTCTGGATGTTGTAGTCAGCC 658
Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642
| || || |||| || | || ||||| ||||| ||||| | ||||||||| | ||
Sbjct 657 AAAGTCCGGCCGTCTTCGAGCTGCTTTCCTGCAAAGATCAATCTCTGCTGATCCGGTGGG 598
Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATTC 33698
| ||||||||||| ||||| |||| || | ||| | ||| || ||| ||
Sbjct 597 ATGCCTTCTTTGTCTTGGATTTTGGCTTTC-ACGTTGTCGATGGTATCAGAGCT---CTC 542
Query 33699 CACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750
||| || | || ||||| || || || || ||||| |||||||| ||||||
Sbjct 541 CACCTCCAAAGTAATCGTCTTCCCCGTCAAGGTTTTAACAAAGATTTGCATA 490
>seq17446
Length=585
Score = 84.2 bits (92), Expect = 1e-11
Identities = 99/134 (74%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582
|||||||| | | || || | || ||||| |||||| || ||||||||||| |
Sbjct 148 CCACCTCTGAGCCTCAAGACGAGGTGAAGAGTAGACTCTTTCTGAATGTTGTAATCCGCT 89
Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642
|| || || | || |||| ||| ||||||||||| |||| | ||| |||||| | ||
Sbjct 88 AGGGTTCGGCCATCTTCCAGTTGCTTTCCGGCAAATATCAGCCTCTGTTGATCTGGTGGT 29
Query 33643 ACACCTTCTTTGTC 33656
| ||||||||||||
Sbjct 28 ATACCTTCTTTGTC 15
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 328449858290880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |