Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04] 63,439 sequences; 2,073,344,508 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq273 134 9e-27 seq19201 116 2e-21 seq683 104 2e-17 seq188 100 2e-16 seq29432 93.3 3e-14 seq94 91.5 1e-13 seq10281 87.8 1e-12 seq17446 84.2 1e-11 >seq273 Length=4066651 Score = 134 bits (148), Expect = 9e-27 Identities = 175/238 (74%), Gaps = 3/238 (1%) Strand=Plus/Plus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 |||| || ||||| || | |||| || |||||| |||||| || |||||||| |||| Sbjct 887187 CACCTCCCCTCAAGCGCAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCGG 887246 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 | || |||||| |||| ||||| ||||| |||||||| ||||| | |||||| || | | Sbjct 887247 ACAGGGTGCGTCCGTCTTCCAACTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGG 887306 Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699 | | || |||||||| || || || | ||| || | |||||| || | ||| Sbjct 887307 GGATGCCCTCTTTGTCTTGGATCTTGGCCTTGA-CATTCTCGATGGTGTCACTGGGCTCC 887365 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGT-TGGT 33756 || || | ||||| || ||||| || || || || |||||||||||||| || |||| Sbjct 887366 ACCTCCAGGGTGATGGTCTTACCGGTCAAGGTCTTCACAAAGATCTGCATTGTCTGGT 887423 >seq19201 Length=536 Score = 116 bits (128), Expect = 2e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || ||||||| ||| | ||||| || || || ||| || || ||||||||||| | | Sbjct 279 CCTCCTCTCAGACGGAGAACCAAGTGAAGCGTCGACTCCTTCTGGATGTTGTAATCCGCG 338 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 ||||| | | |||| |||| || || || || || |||| ||||||||||| | || Sbjct 339 AGTGTCCTTCCGTCTTCCAGCTGCTTCCCCGCGAATATCAGCCGCTGCTGATCCGGTGGG 398 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||| ||||| || ||| ||| |||| ||| | |||||| ||||| || Sbjct 399 ATTCCTTCCTTGTCCTGGATCTTCGCCTTC-ACATTGTCGATCGTGTCGGACGATTCAAC 457 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | || ||||| || || |||| ||||| |||||||||||||| Sbjct 458 CTCTAGGGTTATCGTCTTCCCCGTTAGGGTTTTCACAAAGATCTGCAT 505 >seq683 Length=758919 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | || || | |||||| || |||||| |||||| || ||||| || || || Sbjct 117124 ACCACCCCGCAGACAAAGCACCAAGTGCAGAGTGGACTCTTTCTGGATGTTATAGTCTGA 117183 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||| ||||| | || |||| ||||| || |||||||||| | ||||||| || | || Sbjct 117184 GAGAGTGCGGCCATCCTCCAGCTGTTTGCCCGCAAAAATCAGATGCTGCTGGTCAGGTGG 117243 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCACG-GTGTCGCTTGATTCCA 33700 | || || ||||| ||||| ||| | ||| ||| ||||| || | | | Sbjct 117244 GATGCCCTCCTTGTCTTGGATTTTGGCTTTGA-CATTTTCAATAGTGTCACTGGGCTTGA 117302 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | ||||| || || || || | ||||| |||||||||||||| Sbjct 117303 CCTCGAGTGTGATGGTCTTGCCCGTCAGGGTTTTCACAAAGATCTGCAT 117351 >seq188 Length=3215107 Score = 100 bits (110), Expect = 2e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | || | | | |||| | || |||||| |||||| || || || || || || Sbjct 2830971 ACCACCCCGCAGATGAAGCACCGAGTGCAGAGTGGACTCTTTCTGGATATTATAGTCTGA 2830912 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||| ||||| | || |||| ||||| || |||||||||| ||||||||| || | || Sbjct 2830911 GAGAGTGCGGCCATCCTCCAGCTGTTTGCCCGCAAAAATCAGACGCTGCTGGTCAGGTGG 2830852 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCACG-GTGTCGCTTGATTCCA 33700 | || || |||| ||||| ||| | ||| ||| ||||| | | | | Sbjct 2830851 GATGCCCTCCTTGTTTTGGATTTTAGCTTTGA-CATTCTCAATAGTGTCATTGGGCTTGA 2830793 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | |||| ||||| || || ||||||| || || |||||||||||||| Sbjct 2830792 CCTCAAGTGTGATGGTCTTGCCTGTTAGGGTCTTCACAAAGATCTGCAT 2830744 >seq29432 Length=351 Score = 93.3 bits (102), Expect = 3e-14 Identities = 163/235 (69%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||| ||||| | | ||||| | ||| || ||| ||||| || |||||||| || | Sbjct 111 ACCTCCTCTGAGCCTCAACACAAGATGAAGCGTGGATTCTTTCTGGATGTTGTAGTCAGC 170 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | || || |||| || | |||||||| || || ||||| ||||||||||| | || Sbjct 171 CAAAGTACGCCCGTCTTCGAGCTGTTTTCCAGCGAAGATCAATCGCTGCTGATCCGGAGG 230 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||||||||| || || | | |||| ||| | |||||| || || | Sbjct 231 GATTCCTTCTTTGTCTTGGATCTT-GGCCTTGACATTGTCGATGGTGTCAGAGGACTCGA 289 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGTTGG 33755 | || | ||||| || || || |||| ||||| || ||||||||||| |||| Sbjct 290 CCTCGAGGGTGATGGTCTTGCCGGTTAGGGTTTTCACGAAGATCTGCATCTTTGG 344 >seq94 Length=5588587 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | || | | | |||||| || |||||| |||||| || | || || || || Sbjct 3280480 ACCACCCCGCAGAAGAAGCACCAAGTGCAGAGTGGACTCTTTCTGGACATTTTAGTCTGA 3280421 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||| |||| | || |||| ||||| ||||||||||||| ||| ||||| || | || Sbjct 3280420 GAGAGTGCAGCCATCCTCCATCTGTTTGCCGGCAAAAATCAGACGATGCTGGTCAGGTGG 3280361 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCA-CGGTGTCGCTTGATTCCA 33700 | || || |||| | ||| | || |||| ||| ||||| || | || | Sbjct 3280360 GATGCCCTCCTTGTGTTGGACTTT-AGCTTTGACATTCTCAGTAGTGTCACTGGGCTCGA 3280302 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | ||||| || || ||||| | || || |||||||||||||| Sbjct 3280301 CCTCGAGTGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 3280253 >seq10281 Length=966 Score = 87.8 bits (96), Expect = 1e-12 Identities = 161/232 (69%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||| || ||||| || || || ||| || || |||||||| || | Sbjct 717 CCACCACGGAGACGCAAGACCAAGTGAAGCGTAGACTCCTTCTGGATGTTGTAGTCAGCC 658 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | || || |||| || | || ||||| ||||| ||||| | ||||||||| | || Sbjct 657 AAAGTCCGGCCGTCTTCGAGCTGCTTTCCTGCAAAGATCAATCTCTGCTGATCCGGTGGG 598 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATTC 33698 | ||||||||||| ||||| |||| || | ||| | ||| || ||| || Sbjct 597 ATGCCTTCTTTGTCTTGGATTTTGGCTTTC-ACGTTGTCGATGGTATCAGAGCT---CTC 542 Query 33699 CACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 ||| || | || ||||| || || || || ||||| |||||||| |||||| Sbjct 541 CACCTCCAAAGTAATCGTCTTCCCCGTCAAGGTTTTAACAAAGATTTGCATA 490 >seq17446 Length=585 Score = 84.2 bits (92), Expect = 1e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||||| | | || || | || ||||| |||||| || ||||||||||| | Sbjct 148 CCACCTCTGAGCCTCAAGACGAGGTGAAGAGTAGACTCTTTCTGAATGTTGTAATCCGCT 89 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || || | || |||| ||| ||||||||||| |||| | ||| |||||| | || Sbjct 88 AGGGTTCGGCCATCTTCCAGTTGCTTTCCGGCAAATATCAGCCTCTGTTGATCTGGTGGT 29 Query 33643 ACACCTTCTTTGTC 33656 | |||||||||||| Sbjct 28 ATACCTTCTTTGTC 15 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328449858290880