Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04] 63,439 sequences; 2,073,344,508 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq19370 86.0 6e-12 seq21504 82.4 7e-11 seq93 82.4 7e-11 seq73 82.4 7e-11 >seq19370 Length=533 Score = 86.0 bits (94), Expect = 6e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || ||||||||||| ||||||||| || |||||| ||| ||||||||||| |||| Sbjct 179 GATTCTTTTTGAATATTGTAGTCGGCCAAGGTACGGCCATCCTCGAGCTGTTTTCCGGCG 120 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTT 132039 |||| | | ||| ||||| ||||| |||||||| || || |||||| Sbjct 119 AAGATCAACCTCTGCTGATCCGGAGGGATGCCTTCCTTGTCTTGAATTTT 70 >seq21504 Length=484 Score = 82.4 bits (90), Expect = 7e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 ||||| ||||| || | |||||||||| || ||||||||||| | || || | Sbjct 229 CGCAAGACCAAGTGAAGTGTTGACTCTTTCTGGATGTTGTAGTCAGCAAGAGTTCGTCCA 170 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 |||||||| || || |||| |||||| | || || || || || |||||||| || Sbjct 169 TCTTCGAGTTGCTTTCCGGCGAAGATTAACCTTTGCTGGTCCGGTGGGATGCCTTCCTTG 110 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || || || ||||| | || | ||| |||| |||||| |||| || | | Sbjct 109 TCCTGTATCTTGGTTTTCACGTTGTCGATAGTGTCGGAGCTCTCCACCTCGAGGGTGATC 50 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || || || || || || | ||| |||||||| Sbjct 49 GTCTTTCCGGTGAGTGTCTTGACGAAGATCTGCAT 15 >seq93 Length=2374459 Score = 82.4 bits (90), Expect = 7e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 147505 TACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTG 147564 |||| || ||||| | |||||| ||||||||||| || ||||| || ||||| ||| Sbjct 51187 TACTCTACTATTTCTGTGCACAGATTGCTGCATTTGATCGTTCCCAGGTTCTGCTGGTTG 51246 Query 147565 CTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGG 147602 |||||||| || || | |||||| |||||||||| || Sbjct 51247 CTTTTCCGGTTACAGGAATCTTTGTAGAGCATGTATGG 51284 >seq73 Length=6645612 Score = 82.4 bits (90), Expect = 7e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 ||||| || | ||| | | ||||| ||| |||||||| ||| || || || | Sbjct 5748475 CGCAACACAAGATGAAGAGTGGACTCCTTTGGAATGTTGCAGTTAGACAAAGTGCGTCCA 5748416 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 |||| || || || || ||| || |||| | || ||| | ||||| || ||||||||| Sbjct 5748415 GCTTCCAGTTGCTTGCCAGAAAAGCTTAGTCTTTGCTGAACAGGAGGAATTCCTTCTTTA 5748356 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || || || || | | ||||| ||||| || || || |||| || | Sbjct 5748355 TCCTGGATCTTGGCCTTTACATTGTCCACTGTATCCAAGGGTTCAACCTCGAGAGTAATA 5748296 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| ||||| |||||| | |||||||||||||| Sbjct 5748295 GTTTTCCCAGTAAGAGTTCTCATGAAAATCTGCAT 5748261 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476233253276040