Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04]
63,439 sequences; 2,073,344,508 total letters
Query= NC_026421.1
Length=182380
Score E
Sequences producing significant alignments: (Bits) Value
seq107 257 2e-63
seq170 176 5e-39
seq35 138 1e-27
seq356 136 5e-27
seq52 86.0 7e-12
>seq107
Length=5366022
Score = 257 bits (284), Expect = 2e-63
Identities = 247/317 (78%), Gaps = 0/317 (0%)
Strand=Plus/Minus
Query 171072 GTGGTGACCCAGGATGAGAGGGTGCTGCTGAACACGCCAGCCTCCCTGAAATGCTCCCTG 171131
|||||||| || ||||| | |||||||||||| || || ||| | |||||| |||
Sbjct 5323896 GTGGTGACTCAAGATGAAAAAAAGCTGCTGAACACACCTGCTTCCTTACGATGCTCTCTG 5323837
Query 171132 CAGACTTCTCAGGAGGTGCTGATTGTCACCTGGCAGAAAATCAAGCCCACCATTCCAGAG 171191
||||| | ||| || || |||| || ||||||||||||||| | || | |||||
Sbjct 5323836 GGAACTTCCCGGGAAGTCTTGGTTGTGACGTGGCAGAAAATCAAGGCTACTAGCCCAGAA 5323777
Query 171192 AACATGATAACTTTTAGCAAAGACCACGGGGTGGTGGTCCAGCCGGCTTATAAGGACAAG 171251
|||||| | || || ||||| ||| ||||| ||||||||||| || ||||||||||||
Sbjct 5323776 AACATGGTCACCTTCAGCAAGTCCCATGGGGTTGTGGTCCAGCCAGCCTATAAGGACAAG 5323717
Query 171252 ATAAACATCACCCAGCTTGGACTCCAAAACTCAACCATCACTTTTTGGAATACCACCTTA 171311
|| |||||||| |||| |||||||| ||||||||||| || || |||||||||||| |
Sbjct 5323716 ATCAACATCACTGAGCTGGGACTCCAGAACTCAACCATTACCTTCTGGAATACCACCCTG 5323657
Query 171312 GAGGACGAGGGGTGCTACAACTGCCTCTTTAACACCTTTGGGTCTGGGAAAATCTCGGGG 171371
||||| ||||| || ||| | ||||||||||| || ||||| |||||||| ||| ||
Sbjct 5323656 GAGGATGAGGGATGTTACCAATGCCTCTTTAATACATTTGGTTCTGGGAATGTCTTCGGA 5323597
Query 171372 GTGGCCTGCCTCACCCT 171388
||||||||||| ||
Sbjct 5323596 AAAGCCTGCCTCACTCT 5323580
Score = 239 bits (264), Expect = 5e-58
Identities = 219/277 (79%), Gaps = 0/277 (0%)
Strand=Plus/Minus
Query 171393 GTGCAGCCCACTGTGTTTCTGCATTATAAATTTTTTGATGACCACCTGAACATCACCTGT 171452
||||||||||| || | || | |||||||| ||||| |||||||| || ||||| ||
Sbjct 5321331 GTGCAGCCCACAGTAGTCCTCTACTATAAATTCTTTGACGACCACCTAAATATCACTTGC 5321272
Query 171453 TCTGCCAATGCCCGCCCGCCACCTCAGATTTTTTGGAAGATTTCGGGGTCAGAAATTGAA 171512
||||||||||||||||| | ||| ||| | |||||| | || ||||||| ||| ||
Sbjct 5321271 TCTGCCAATGCCCGCCCAGCCCCTGTGATCTCCTGGAAGGTCTCTGGGTCAGGAATGGAC 5321212
Query 171513 AACAGTAGCGAGGTTCTTTCCCATTCTAATGGAACTACTTCTGTAACCAGTGTACTCCAA 171572
||||||| ||| ||||||| ||| | ||||| || || ||||| |||||||| |||||
Sbjct 5321211 AACAGTACTGAGATTCTTTCACATCCCAATGGGACCACATCTGTCACCAGTGTCCTCCAT 5321152
Query 171573 GTTAAAGACCCCAAGAGTCAGTTGGGAAAGGAGGTTATCTGCCAAGTGTGGCACCTGGGA 171632
|| |||||||||||||||||| ||||||| ||||| ||||||| ||| |||||| ||
Sbjct 5321151 GTCAAAGACCCCAAGAGTCAGGTGGGAAAAGAGGTCGTCTGCCAGGTGCTGCACCTAGGG 5321092
Query 171633 AATGTAACTAACTTAAGGGAAACTGTAAGCAAGGGTA 171669
| ||| || | ||| ||| ||||||| | ||| ||||
Sbjct 5321091 ACTGTGACCAGCTTCAGGCAAACTGTGAACAAAGGTA 5321055
>seq170
Length=9568404
Score = 176 bits (194), Expect = 5e-39
Identities = 145/177 (82%), Gaps = 0/177 (0%)
Strand=Plus/Minus
Query 146982 CTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAA 147041
||| ||||| || | ||| || | ||||||||||||||| ||||||||||| ||||||||
Sbjct 9399138 CTTCAGGCCAGTGATGTGCGCGATCATGTAGGTGAGCAGGGAGTAGCTGGCGATGTTGAA 9399079
Query 147042 GGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTC 147101
||| ||||||||||||||||| | |||||||| ||||||||||| || ||||| ||||
Sbjct 9399078 GGGCACCCCCAGGCCCATGTCTGCTGACCTCTGATACAGCTGGCAGGACAGCTCACCGTT 9399019
Query 147102 GGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCATGGCGGGCAGGTC 147158
||||||| |||||||| ||| |||||||| || || |||||| ||||| ||
Sbjct 9399018 CACCACGTAGAACTGGCAAAGGGCATGGCACGGAGGTAGAGCCATGAGAGGCAGATC 9398962
Score = 91.5 bits (100), Expect = 2e-13
Identities = 116/160 (73%), Gaps = 0/160 (0%)
Strand=Plus/Minus
Query 147283 GCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTCTGTGC 147342
|||||||| ||||||||||| ||||| || ||||| || | || || | |||||
Sbjct 9395613 GCCCCAAAATGCCTCCACTGAAAGCCATAAACTGGGCCTAAATCCCCTTCTTCTCTGTTG 9395554
Query 147343 GAGAAGCCCGCCCGCTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGATGCCCACTCCC 147402
||||| ||| | | || || || ||||||||| ||| |||||||| | |||||||
Sbjct 9395553 GAGAATCCCAGGCTGTCCAGGAAGTCACGGGACCCGTTGGCATCCCAGATTCTCACTCCC 9395494
Query 147403 TTGGCGGAGAGCTCCTTAGAGTCCGTGGAGCCCCGGATGA 147442
|||| || || || |||| | ||||| ||| ||| ||
Sbjct 9395493 TTGGATGACAGTTCTTTAGCATTTGTGGATCCCTGGAAGA 9395454
>seq35
Length=5694442
Score = 138 bits (152), Expect = 1e-27
Identities = 537/840 (64%), Gaps = 33/840 (4%)
Strand=Plus/Minus
Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669
|||| | ||||||||| |||| || | ||||| | |||||| | | | ||||
Sbjct 3840019 GTACGCCCTGGTGTTTACAGTTGGTCTCCTGGGCAACGTGCTGGTGGTGGTGATTCTCAC 3839960
Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729
|| |||| | | || | || ||||||||||||| |||| ||||| ||||| || |||
Sbjct 3839959 GAAATACAGGCGCCTTCGCATTATGACCAACATCTACCTGCTCAACTTGGCCATTTCTGA 3839900
Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACTTCCACTCGGGGGGAACTGGTGG 8789
| ||||| | | |||||||| ||||| |||||||||| || | |||| ||
Sbjct 3839899 CTTGCTGTTTCTATTCACCCTGCCCTTCTGGATTCACTATG--TCAAGTGGAA----TGA 3839846
Query 8790 GTGGGACGCCGACCACCACATGTGTAAGTTTATAGTGGGCCTTTGCAACGTGGCACTGTA 8849
||||| | ||| | |||||||||||| | || | | || ||| ||||
Sbjct 3839845 GTGGGTTTTTGGCCATCGCATGTGTAAGTTGCTCTCCGGGTTGTATTACATGGGCTTGTA 3839786
Query 8850 CAGCGAAGTCCTGTTTATCATCCTGTTGACTCTGGACAGGTATCTTGCAGTTGTGTACGC 8909
| | || || | || ||||||||| |||| | ||| | ||||| || | || ||||
Sbjct 3839785 CGGGGAGATCTTTTTCATCATCCTGCTGACGATAGACCGATATCTGGCCATCGTCCACGC 3839726
Query 8910 GGTGGCTTACAGGCTGGTCCGCGTGGTACCAATAGGCATCCTCGCCAGCCTCCTGGCCTG 8969
||| | | || || ||| || | | || ||| | ||| | || ||||
Sbjct 3839725 TGTGTTTGCCCTGCGGGCCCGGACCGTCACTTTTGGTATCATAAGCAGTGTTCTCACCTG 3839666
Query 8970 GATTCTGGCTGTGTTGGGAACCATGCCAGAGTTTATCTTTTATGAATCCAATAATGCCAC 9029
| ||||| | | ||| | || | || || |||||||| |||| | | | | | |
Sbjct 3839665 GGCCCTGGCAGGGCTGGCAGCCCTCCCTGAATTTATCTTCCATGAGTTCCAACAGGAGTC 3839606
Query 9030 AGGCAAGGGGGTCTGCCAAGCCTCCTACACAGA------------CTTTTGGAAGGGGGT 9077
|| || | ||||| | ||| | || | |||||| | |
Sbjct 3839605 TGGACAGAGTTTCTGCAGTTCACTTTACCCGGAGGACGAAGAGGACACCTGGAAGCGTTT 3839546
Query 9078 TGATGTTACCAGCATGACCATGGTCACCCTCATCCTGCCTTTGCTTATCATGGCCTTCTG 9137
| | | | || |||| | | |||| |||||| |||| || ||||| ||||
Sbjct 3839545 TCACGCTGTGAGGATGAATGTCTTGGGTCTCACTCTGCCTCTGCTCATTATGGCTGTCTG 3839486
Query 9138 CTA--CTGGAAAATCATCAAGGTCCTCCTCA-AGGCCCACAACAGGTCGAGAAACCTGCA 9194
||| | |||| |||| || |||| ||| | |||| ||| || ||| |
Sbjct 3839485 CTATGCCGGAA--TCATTAAAACCCTCATCAGATGCCC----CAGTAGGAAAAAGTATAA 3839432
Query 9195 CGCCGTCAAGCTCATTTTGATCATGGTGGTGCTTTATTTTGTCTTTTGGATCCCCTACAA 9254
||| || ||||||||| ||||| ||||| | | ||| | || ||| || |||||
Sbjct 3839431 GGCCATCCGGCTCATTTTTATCATCATGGTGGTCTTTTTCATTTTCTGGGGACCTTACAA 3839372
Query 9255 CGTCCTGCTCATTTTACACACCTACCAAGAGGCCATTTTTGGGCCAGACTGTGAAGCGCG 9314
| | ||| || | | | || ||| || | | |||| | | ||||||||| ||
Sbjct 3839371 CCTGGCTCTCCTTCTCTCCGCTTATCAAACGGTCTTCTTTGAGACCGACTGTGAA---CG 3839315
Query 9315 GCGCAG---GGTGGACATGGCCCTCTTGGTGGCTGAGATGATCGCCTGCACCCACTGCTG 9371
| ||| | |||| ||||| | ||||| | ||| ||||||||| ||| ||||||||
Sbjct 3839314 GAGCAAACAGCTGGATGTGGCCATGCTGGTGACAGAGGTGATCGCCTACACGCACTGCTG 3839255
Query 9372 CGTCAACCCCGTCATCTACGCGTTTGTGGGCGAAAAGTTCCAACAGAACCTTCAGGACTT 9431
||||||||| || |||||||| ||||| || || | ||||| || |||| || ||||
Sbjct 3839254 CGTCAACCCTGTGATCTACGCCTTTGTCGGAGAGAGGTTCCGGGAGCACCTCCACCACTT 3839195
Score = 127 bits (140), Expect = 2e-24
Identities = 203/289 (70%), Gaps = 8/289 (3%)
Strand=Plus/Plus
Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669
|||||| ||||| ||| | |||| || | |||||| |||||||| |||| ||||||||
Sbjct 3869806 GTACTCCCTGGTATTTATCGTTGGCCTGGTCGGCAATACCCTGGTGGTCCTGGTCCTCAT 3869865
Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729
| |||||||||||| || |||||||| ||||| ||| ||||||||||| | ||
Sbjct 3869866 GCAACACAAGAGGCTCAAGAGCATGACCAGCATCTACCTCCTCAACCTGGCCATCTCCGA 3869925
Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACTTCCA-CTCGGGGGGAACTGGTG 8788
|||||| | | ||||| || ||||| |||||| ||| | | || | |||||||
Sbjct 3869926 CCTGCTCTTCCTCTTCACGCTGCCCTTCTGGATTGACTACAATCTGAAAGACAACTGGTC 3869985
Query 8789 GGTGGGACGCCGACCACCACATGTGTAAGTTTATAGTGGGCCTTTGCAACGTGGCACTGT 8848
| || || || |||||| ||| | | ||| |||| | || | | |||
Sbjct 3869986 TTTCGG-----GA--ACGGCATGTGCAAGCTGCTCTCGGGGCTTTACTACATCGGCTTGT 3870038
Query 8849 ACAGCGAAGTCCTGTTTATCATCCTGTTGACTCTGGACAGGTATCTTGC 8897
|||||| || | || || |||||| |||| | |||||||| || ||
Sbjct 3870039 TCAGCGAGATCTTTTTCATGATCCTGCTGACCATCGACAGGTACCTGGC 3870087
>seq356
Length=1899616
Score = 136 bits (150), Expect = 5e-27
Identities = 130/167 (78%), Gaps = 12/167 (7%)
Strand=Plus/Plus
Query 178231 AGGGTTACTTGGGTTGCCAGGCCTTGTCAGAGATGATTCAGTTTTACTTGGAGGAGGTGA 178290
|||||||| |||||||||| |||||||| |||||||| ||||||||||||||||||||||
Sbjct 754421 AGGGTTACCTGGGTTGCCAAGCCTTGTCGGAGATGATCCAGTTTTACTTGGAGGAGGTGA 754480
Query 178291 TGCCTCAGGCCGAGAATCACAGCGGGGGTGGAGGCCCGGACATTAAGGAGCATGTAAACT 178350
|||| ||||| |||| || ||| ||| || || ||| |||| || ||||
Sbjct 754481 TGCCCCAGGCTGAGAGCCA----------GGA--CCCAGAGATCAAGAAGCACGTGAACT 754528
Query 178351 CTCTGGGGGAAAAGCTAAAGACCCTTAGAGTGAGGCTGCGGCGATGT 178397
| || |||||||| || ||||| || || ||||||| |||| |||
Sbjct 754529 CCCTCGGGGAAAACCTGAAGACGCTCAGGCTGAGGCTCAGGCGCTGT 754575
Score = 93.3 bits (102), Expect = 5e-14
Identities = 62/69 (90%), Gaps = 0/69 (0%)
Strand=Plus/Plus
Query 178165 CtttttttCAAATGAAGGACCAGCTGGACAACATGTTGTTAAATGGGTCCCTGCTGGAAG 178224
|||||| ||||||||||||||| |||||||||||||||| ||||||||| ||||||| |
Sbjct 754081 CTTTTTAGCAAATGAAGGACCAGTTGGACAACATGTTGTTGAATGGGTCCTTGCTGGAGG 754140
Query 178225 ACTTTAAGG 178233
|||||| ||
Sbjct 754141 ACTTTACGG 754149
Score = 89.7 bits (98), Expect = 6e-13
Identities = 66/77 (86%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 178462 AGCTTCAAGAAAAGGGTGTTTACAAAGCTATGAGTGAGTTTGATATTTTTATTAACTACA 178521
|||| ||||| || || || |||||||| ||||||||||| ||||| || || |||||||
Sbjct 756674 AGCTCCAAGAGAAAGGGGTCTACAAAGCCATGAGTGAGTTCGATATCTTCATCAACTACA 756733
Query 178522 TAGAAGCTTACATGACA 178538
||||||| |||||||||
Sbjct 756734 TAGAAGCCTACATGACA 756750
>seq52
Length=8508475
Score = 86.0 bits (94), Expect = 7e-12
Identities = 107/147 (73%), Gaps = 0/147 (0%)
Strand=Plus/Minus
Query 8621 TGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCATAAAGTACAAGA 8680
||||| | || || || | || || |||||||||||| ||||| | | || |||||
Sbjct 2297309 TGTTTGTCTTCGGTCTCCTGGGAAACAGCCTGGTGATCCTGGTCCTTGTCATGTGCAAGA 2297250
Query 8681 GGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGACCTGCTGCTGA 8740
||| |||| ||| || || | ||||| |||||||||||||| |||||||| |
Sbjct 2297249 AGCTGAGGAGCATCACAGACGTGTTCCTCTTCAACCTGGCCCTGTCCGACCTGCTTTTTG 2297190
Query 8741 TTTTCACCCTCCCCTTTTGGATTCACT 8767
| ||| || |||||||| || |||||
Sbjct 2297189 TCTTCTCCATCCCCTTTCAGACTCACT 2297163
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 583025301309600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |