Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04] 63,439 sequences; 2,073,344,508 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq107 257 2e-63 seq170 176 5e-39 seq35 138 1e-27 seq356 136 5e-27 seq52 86.0 7e-12 >seq107 Length=5366022 Score = 257 bits (284), Expect = 2e-63 Identities = 247/317 (78%), Gaps = 0/317 (0%) Strand=Plus/Minus Query 171072 GTGGTGACCCAGGATGAGAGGGTGCTGCTGAACACGCCAGCCTCCCTGAAATGCTCCCTG 171131 |||||||| || ||||| | |||||||||||| || || ||| | |||||| ||| Sbjct 5323896 GTGGTGACTCAAGATGAAAAAAAGCTGCTGAACACACCTGCTTCCTTACGATGCTCTCTG 5323837 Query 171132 CAGACTTCTCAGGAGGTGCTGATTGTCACCTGGCAGAAAATCAAGCCCACCATTCCAGAG 171191 ||||| | ||| || || |||| || ||||||||||||||| | || | ||||| Sbjct 5323836 GGAACTTCCCGGGAAGTCTTGGTTGTGACGTGGCAGAAAATCAAGGCTACTAGCCCAGAA 5323777 Query 171192 AACATGATAACTTTTAGCAAAGACCACGGGGTGGTGGTCCAGCCGGCTTATAAGGACAAG 171251 |||||| | || || ||||| ||| ||||| ||||||||||| || |||||||||||| Sbjct 5323776 AACATGGTCACCTTCAGCAAGTCCCATGGGGTTGTGGTCCAGCCAGCCTATAAGGACAAG 5323717 Query 171252 ATAAACATCACCCAGCTTGGACTCCAAAACTCAACCATCACTTTTTGGAATACCACCTTA 171311 || |||||||| |||| |||||||| ||||||||||| || || |||||||||||| | Sbjct 5323716 ATCAACATCACTGAGCTGGGACTCCAGAACTCAACCATTACCTTCTGGAATACCACCCTG 5323657 Query 171312 GAGGACGAGGGGTGCTACAACTGCCTCTTTAACACCTTTGGGTCTGGGAAAATCTCGGGG 171371 ||||| ||||| || ||| | ||||||||||| || ||||| |||||||| ||| || Sbjct 5323656 GAGGATGAGGGATGTTACCAATGCCTCTTTAATACATTTGGTTCTGGGAATGTCTTCGGA 5323597 Query 171372 GTGGCCTGCCTCACCCT 171388 ||||||||||| || Sbjct 5323596 AAAGCCTGCCTCACTCT 5323580 Score = 239 bits (264), Expect = 5e-58 Identities = 219/277 (79%), Gaps = 0/277 (0%) Strand=Plus/Minus Query 171393 GTGCAGCCCACTGTGTTTCTGCATTATAAATTTTTTGATGACCACCTGAACATCACCTGT 171452 ||||||||||| || | || | |||||||| ||||| |||||||| || ||||| || Sbjct 5321331 GTGCAGCCCACAGTAGTCCTCTACTATAAATTCTTTGACGACCACCTAAATATCACTTGC 5321272 Query 171453 TCTGCCAATGCCCGCCCGCCACCTCAGATTTTTTGGAAGATTTCGGGGTCAGAAATTGAA 171512 ||||||||||||||||| | ||| ||| | |||||| | || ||||||| ||| || Sbjct 5321271 TCTGCCAATGCCCGCCCAGCCCCTGTGATCTCCTGGAAGGTCTCTGGGTCAGGAATGGAC 5321212 Query 171513 AACAGTAGCGAGGTTCTTTCCCATTCTAATGGAACTACTTCTGTAACCAGTGTACTCCAA 171572 ||||||| ||| ||||||| ||| | ||||| || || ||||| |||||||| ||||| Sbjct 5321211 AACAGTACTGAGATTCTTTCACATCCCAATGGGACCACATCTGTCACCAGTGTCCTCCAT 5321152 Query 171573 GTTAAAGACCCCAAGAGTCAGTTGGGAAAGGAGGTTATCTGCCAAGTGTGGCACCTGGGA 171632 || |||||||||||||||||| ||||||| ||||| ||||||| ||| |||||| || Sbjct 5321151 GTCAAAGACCCCAAGAGTCAGGTGGGAAAAGAGGTCGTCTGCCAGGTGCTGCACCTAGGG 5321092 Query 171633 AATGTAACTAACTTAAGGGAAACTGTAAGCAAGGGTA 171669 | ||| || | ||| ||| ||||||| | ||| |||| Sbjct 5321091 ACTGTGACCAGCTTCAGGCAAACTGTGAACAAAGGTA 5321055 >seq170 Length=9568404 Score = 176 bits (194), Expect = 5e-39 Identities = 145/177 (82%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 146982 CTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAA 147041 ||| ||||| || | ||| || | ||||||||||||||| ||||||||||| |||||||| Sbjct 9399138 CTTCAGGCCAGTGATGTGCGCGATCATGTAGGTGAGCAGGGAGTAGCTGGCGATGTTGAA 9399079 Query 147042 GGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTC 147101 ||| ||||||||||||||||| | |||||||| ||||||||||| || ||||| |||| Sbjct 9399078 GGGCACCCCCAGGCCCATGTCTGCTGACCTCTGATACAGCTGGCAGGACAGCTCACCGTT 9399019 Query 147102 GGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCATGGCGGGCAGGTC 147158 ||||||| |||||||| ||| |||||||| || || |||||| ||||| || Sbjct 9399018 CACCACGTAGAACTGGCAAAGGGCATGGCACGGAGGTAGAGCCATGAGAGGCAGATC 9398962 Score = 91.5 bits (100), Expect = 2e-13 Identities = 116/160 (73%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 147283 GCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTCTGTGC 147342 |||||||| ||||||||||| ||||| || ||||| || | || || | ||||| Sbjct 9395613 GCCCCAAAATGCCTCCACTGAAAGCCATAAACTGGGCCTAAATCCCCTTCTTCTCTGTTG 9395554 Query 147343 GAGAAGCCCGCCCGCTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGATGCCCACTCCC 147402 ||||| ||| | | || || || ||||||||| ||| |||||||| | ||||||| Sbjct 9395553 GAGAATCCCAGGCTGTCCAGGAAGTCACGGGACCCGTTGGCATCCCAGATTCTCACTCCC 9395494 Query 147403 TTGGCGGAGAGCTCCTTAGAGTCCGTGGAGCCCCGGATGA 147442 |||| || || || |||| | ||||| ||| ||| || Sbjct 9395493 TTGGATGACAGTTCTTTAGCATTTGTGGATCCCTGGAAGA 9395454 >seq35 Length=5694442 Score = 138 bits (152), Expect = 1e-27 Identities = 537/840 (64%), Gaps = 33/840 (4%) Strand=Plus/Minus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669 |||| | ||||||||| |||| || | ||||| | |||||| | | | |||| Sbjct 3840019 GTACGCCCTGGTGTTTACAGTTGGTCTCCTGGGCAACGTGCTGGTGGTGGTGATTCTCAC 3839960 Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729 || |||| | | || | || ||||||||||||| |||| ||||| ||||| || ||| Sbjct 3839959 GAAATACAGGCGCCTTCGCATTATGACCAACATCTACCTGCTCAACTTGGCCATTTCTGA 3839900 Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACTTCCACTCGGGGGGAACTGGTGG 8789 | ||||| | | |||||||| ||||| |||||||||| || | |||| || Sbjct 3839899 CTTGCTGTTTCTATTCACCCTGCCCTTCTGGATTCACTATG--TCAAGTGGAA----TGA 3839846 Query 8790 GTGGGACGCCGACCACCACATGTGTAAGTTTATAGTGGGCCTTTGCAACGTGGCACTGTA 8849 ||||| | ||| | |||||||||||| | || | | || ||| |||| Sbjct 3839845 GTGGGTTTTTGGCCATCGCATGTGTAAGTTGCTCTCCGGGTTGTATTACATGGGCTTGTA 3839786 Query 8850 CAGCGAAGTCCTGTTTATCATCCTGTTGACTCTGGACAGGTATCTTGCAGTTGTGTACGC 8909 | | || || | || ||||||||| |||| | ||| | ||||| || | || |||| Sbjct 3839785 CGGGGAGATCTTTTTCATCATCCTGCTGACGATAGACCGATATCTGGCCATCGTCCACGC 3839726 Query 8910 GGTGGCTTACAGGCTGGTCCGCGTGGTACCAATAGGCATCCTCGCCAGCCTCCTGGCCTG 8969 ||| | | || || ||| || | | || ||| | ||| | || |||| Sbjct 3839725 TGTGTTTGCCCTGCGGGCCCGGACCGTCACTTTTGGTATCATAAGCAGTGTTCTCACCTG 3839666 Query 8970 GATTCTGGCTGTGTTGGGAACCATGCCAGAGTTTATCTTTTATGAATCCAATAATGCCAC 9029 | ||||| | | ||| | || | || || |||||||| |||| | | | | | | Sbjct 3839665 GGCCCTGGCAGGGCTGGCAGCCCTCCCTGAATTTATCTTCCATGAGTTCCAACAGGAGTC 3839606 Query 9030 AGGCAAGGGGGTCTGCCAAGCCTCCTACACAGA------------CTTTTGGAAGGGGGT 9077 || || | ||||| | ||| | || | |||||| | | Sbjct 3839605 TGGACAGAGTTTCTGCAGTTCACTTTACCCGGAGGACGAAGAGGACACCTGGAAGCGTTT 3839546 Query 9078 TGATGTTACCAGCATGACCATGGTCACCCTCATCCTGCCTTTGCTTATCATGGCCTTCTG 9137 | | | | || |||| | | |||| |||||| |||| || ||||| |||| Sbjct 3839545 TCACGCTGTGAGGATGAATGTCTTGGGTCTCACTCTGCCTCTGCTCATTATGGCTGTCTG 3839486 Query 9138 CTA--CTGGAAAATCATCAAGGTCCTCCTCA-AGGCCCACAACAGGTCGAGAAACCTGCA 9194 ||| | |||| |||| || |||| ||| | |||| ||| || ||| | Sbjct 3839485 CTATGCCGGAA--TCATTAAAACCCTCATCAGATGCCC----CAGTAGGAAAAAGTATAA 3839432 Query 9195 CGCCGTCAAGCTCATTTTGATCATGGTGGTGCTTTATTTTGTCTTTTGGATCCCCTACAA 9254 ||| || ||||||||| ||||| ||||| | | ||| | || ||| || ||||| Sbjct 3839431 GGCCATCCGGCTCATTTTTATCATCATGGTGGTCTTTTTCATTTTCTGGGGACCTTACAA 3839372 Query 9255 CGTCCTGCTCATTTTACACACCTACCAAGAGGCCATTTTTGGGCCAGACTGTGAAGCGCG 9314 | | ||| || | | | || ||| || | | |||| | | ||||||||| || Sbjct 3839371 CCTGGCTCTCCTTCTCTCCGCTTATCAAACGGTCTTCTTTGAGACCGACTGTGAA---CG 3839315 Query 9315 GCGCAG---GGTGGACATGGCCCTCTTGGTGGCTGAGATGATCGCCTGCACCCACTGCTG 9371 | ||| | |||| ||||| | ||||| | ||| ||||||||| ||| |||||||| Sbjct 3839314 GAGCAAACAGCTGGATGTGGCCATGCTGGTGACAGAGGTGATCGCCTACACGCACTGCTG 3839255 Query 9372 CGTCAACCCCGTCATCTACGCGTTTGTGGGCGAAAAGTTCCAACAGAACCTTCAGGACTT 9431 ||||||||| || |||||||| ||||| || || | ||||| || |||| || |||| Sbjct 3839254 CGTCAACCCTGTGATCTACGCCTTTGTCGGAGAGAGGTTCCGGGAGCACCTCCACCACTT 3839195 Score = 127 bits (140), Expect = 2e-24 Identities = 203/289 (70%), Gaps = 8/289 (3%) Strand=Plus/Plus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669 |||||| ||||| ||| | |||| || | |||||| |||||||| |||| |||||||| Sbjct 3869806 GTACTCCCTGGTATTTATCGTTGGCCTGGTCGGCAATACCCTGGTGGTCCTGGTCCTCAT 3869865 Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729 | |||||||||||| || |||||||| ||||| ||| ||||||||||| | || Sbjct 3869866 GCAACACAAGAGGCTCAAGAGCATGACCAGCATCTACCTCCTCAACCTGGCCATCTCCGA 3869925 Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACTTCCA-CTCGGGGGGAACTGGTG 8788 |||||| | | ||||| || ||||| |||||| ||| | | || | ||||||| Sbjct 3869926 CCTGCTCTTCCTCTTCACGCTGCCCTTCTGGATTGACTACAATCTGAAAGACAACTGGTC 3869985 Query 8789 GGTGGGACGCCGACCACCACATGTGTAAGTTTATAGTGGGCCTTTGCAACGTGGCACTGT 8848 | || || || |||||| ||| | | ||| |||| | || | | ||| Sbjct 3869986 TTTCGG-----GA--ACGGCATGTGCAAGCTGCTCTCGGGGCTTTACTACATCGGCTTGT 3870038 Query 8849 ACAGCGAAGTCCTGTTTATCATCCTGTTGACTCTGGACAGGTATCTTGC 8897 |||||| || | || || |||||| |||| | |||||||| || || Sbjct 3870039 TCAGCGAGATCTTTTTCATGATCCTGCTGACCATCGACAGGTACCTGGC 3870087 >seq356 Length=1899616 Score = 136 bits (150), Expect = 5e-27 Identities = 130/167 (78%), Gaps = 12/167 (7%) Strand=Plus/Plus Query 178231 AGGGTTACTTGGGTTGCCAGGCCTTGTCAGAGATGATTCAGTTTTACTTGGAGGAGGTGA 178290 |||||||| |||||||||| |||||||| |||||||| |||||||||||||||||||||| Sbjct 754421 AGGGTTACCTGGGTTGCCAAGCCTTGTCGGAGATGATCCAGTTTTACTTGGAGGAGGTGA 754480 Query 178291 TGCCTCAGGCCGAGAATCACAGCGGGGGTGGAGGCCCGGACATTAAGGAGCATGTAAACT 178350 |||| ||||| |||| || ||| ||| || || ||| |||| || |||| Sbjct 754481 TGCCCCAGGCTGAGAGCCA----------GGA--CCCAGAGATCAAGAAGCACGTGAACT 754528 Query 178351 CTCTGGGGGAAAAGCTAAAGACCCTTAGAGTGAGGCTGCGGCGATGT 178397 | || |||||||| || ||||| || || ||||||| |||| ||| Sbjct 754529 CCCTCGGGGAAAACCTGAAGACGCTCAGGCTGAGGCTCAGGCGCTGT 754575 Score = 93.3 bits (102), Expect = 5e-14 Identities = 62/69 (90%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 178165 CtttttttCAAATGAAGGACCAGCTGGACAACATGTTGTTAAATGGGTCCCTGCTGGAAG 178224 |||||| ||||||||||||||| |||||||||||||||| ||||||||| ||||||| | Sbjct 754081 CTTTTTAGCAAATGAAGGACCAGTTGGACAACATGTTGTTGAATGGGTCCTTGCTGGAGG 754140 Query 178225 ACTTTAAGG 178233 |||||| || Sbjct 754141 ACTTTACGG 754149 Score = 89.7 bits (98), Expect = 6e-13 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 178462 AGCTTCAAGAAAAGGGTGTTTACAAAGCTATGAGTGAGTTTGATATTTTTATTAACTACA 178521 |||| ||||| || || || |||||||| ||||||||||| ||||| || || ||||||| Sbjct 756674 AGCTCCAAGAGAAAGGGGTCTACAAAGCCATGAGTGAGTTCGATATCTTCATCAACTACA 756733 Query 178522 TAGAAGCTTACATGACA 178538 ||||||| ||||||||| Sbjct 756734 TAGAAGCCTACATGACA 756750 >seq52 Length=8508475 Score = 86.0 bits (94), Expect = 7e-12 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 8621 TGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCATAAAGTACAAGA 8680 ||||| | || || || | || || |||||||||||| ||||| | | || ||||| Sbjct 2297309 TGTTTGTCTTCGGTCTCCTGGGAAACAGCCTGGTGATCCTGGTCCTTGTCATGTGCAAGA 2297250 Query 8681 GGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGACCTGCTGCTGA 8740 ||| |||| ||| || || | ||||| |||||||||||||| |||||||| | Sbjct 2297249 AGCTGAGGAGCATCACAGACGTGTTCCTCTTCAACCTGGCCCTGTCCGACCTGCTTTTTG 2297190 Query 8741 TTTTCACCCTCCCCTTTTGGATTCACT 8767 | ||| || |||||||| || ||||| Sbjct 2297189 TCTTCTCCATCCCCTTTCAGACTCACT 2297163 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583025301309600