Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04] 63,439 sequences; 2,073,344,508 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq19201 145 7e-30 seq25626 132 4e-26 seq475 111 1e-19 seq10281 100 3e-16 seq61295 96.9 3e-15 seq683 95.1 1e-14 seq58060 91.5 1e-13 seq42717 91.5 1e-13 seq58 89.7 5e-13 seq19370 87.8 2e-12 seq671 86.0 6e-12 seq21504 84.2 2e-11 seq40511 82.4 7e-11 >seq19201 Length=536 Score = 145 bits (160), Expect = 7e-30 Identities = 160/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 35528 ACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCC 35587 ||||| || | ||| |||||| || ||||||||||| || | || | |||| ||| Sbjct 297 ACCAAGTGAAGCGTCGACTCCTTCTGGATGTTGTAATCCGCGAGTGTCCTTCCGTCTTCC 356 Query 35588 AGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATG 35647 |||||||| ||||| ||||||| ||||||||| |||| || | | ||||||||| | Sbjct 357 AGCTGCTTCCCCGCGAATATCAGCCGCTGCTGATCCGGTGGGATTCCTTCCTTGTCCTGG 416 Query 35648 ATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTA 35707 ||||| ||||| | | | | ||||||| |||||| ||||| | || ||||| || Sbjct 417 ATCTTCGCCTTCACATTGTCGATCGTGTCGGACGATTCAACCTCTAGGGTTATCGTCTTC 476 Query 35708 CCCGTCAAAGTTTTCACAAATATCTGCATTCTG 35740 ||||| | ||||||||||| ||||||||| || Sbjct 477 CCCGTTAGGGTTTTCACAAAGATCTGCATTTTG 509 >seq25626 Length=405 Score = 132 bits (146), Expect = 4e-26 Identities = 168/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | ||| | || | |||||| || |||||| ||||||||||| ||||| Sbjct 356 CCACCACGAAGCCTGAGAACAAGATGTAAAGTCGACTCCTTCTGAATGTTGTAGTCGGCT 297 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 ||||| || |||| || |||||||| || || || ||||| | ||||||||||| |||| Sbjct 296 AAGGTGCGGCCGTCTTCAAGCTGCTTCCCGGCGAAGATCAATCTCTGCTGGTCCGGAGGA 237 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTC---GCTCGATTCC 35686 | | |||||||||| ||||| ||| | | | | ||||| |||| || Sbjct 236 ATACCCTCCTTGTCCTGAATCTTAGCCTTGACGTTATCAATGGTGTCTGAGCTC---TCA 180 Query 35687 ACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||||||| || || || || || || | ||| |||||||| |||||||| Sbjct 179 ACCTCCAAAGTAATAGTCTTTCCGGTGAGAGTCTTCACAAAGATCTGCAT 130 Score = 87.8 bits (96), Expect = 2e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 || ||||| | ||| | || | |||||| || ||| ||||| |||||||| || ||| Sbjct 128 CCTCCACGAAGCCTGAGAACAAGATGTAAAGTCGACTCTTTTTGGATGTTGTAGTCAGCC 69 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || |||| |||| || |||||||| || || || ||||| | ||||||||||| |||| Sbjct 68 AATGTTCTGCCGTCTTCAAGCTGCTTTCCGGCGAAGATCAATCTCTGCTGGTCCGGAGGA 9 Query 35630 A 35630 | Sbjct 8 A 8 >seq475 Length=1570329 Score = 111 bits (122), Expect = 1e-19 Identities = 142/196 (72%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || || |||||||| || | | || || | || ||||||||||| |||||||| Sbjct 1256071 CTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCCGCAAA 1256012 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | || ||||||||| | || | || |||||| ||| |||||| ||||| | | Sbjct 1256011 GATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATCTTGGCCTTCACATT 1255952 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | |||||||| | |||||||||| ||||| || || || |||| || ||||| Sbjct 1255951 CTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCAC 1255892 Query 35725 AAATATCTGCATTCTG 35740 || || |||||| || Sbjct 1255891 GAAAATTTGCATTTTG 1255876 >seq10281 Length=966 Score = 100 bits (110), Expect = 3e-16 Identities = 163/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | ||| | ||||| || | ||| ||| || || |||||||| |||||| Sbjct 261 CCACCACGGAGCCTGAGGACCAAGTGGAGCGTGGACTCTTTCTGGATGTTGTAGTCGGCC 202 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || ||||| |||| || ||||| || || || || || | || ||||||||||| || Sbjct 201 AAAGTTCGGCCGTCTTCGAGCTGTTTGCCGGCGAAGATAAGCCTCTGCTGGTCCGGCGGG 142 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTC---GCTCGATTC 35685 | || ||||| ||| |||| || ||| | |||| | | ||||| ||| ||| Sbjct 141 ATGCCTTCCTTATCCTGGATC-TTGACTTTAACGTTGTCGATGGTGTCAGAGCT---TTC 86 Query 35686 CACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||||| | ||||| || || || || | ||| || | || ||||||| Sbjct 85 CACCTCGAGGGTGATTGTCTTTCCGGTGAGAGTCTTAATGAAGGTCTGCAT 35 >seq61295 Length=203 Score = 96.9 bits (106), Expect = 3e-15 Identities = 118/160 (74%), Gaps = 6/160 (4%) Strand=Plus/Minus Query 35580 CGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCT 35639 |||| || |||||||| || || || ||||||| ||||||||||| ||||| | ||||| Sbjct 193 CGTCTTCAAGCTGCTTCCCGGCGAAGATCAACCTCTGCTGGTCCGGAGGAATACCCTCCT 134 Query 35640 TGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTC---GCTCGATTCCACCTCCACCG 35696 ||||| |||||| ||| | | | | ||||| |||| |||||||||| | Sbjct 133 TGTCCTGGATCTTGGCCTTGACGTTATCAATGGTGTCGGAGCTC---TCCACCTCCAAAG 77 Query 35697 TGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 | || || || || || | ||| |||||||| |||||||| Sbjct 76 TAATGGTCTTTCCGGTGAGAGTCTTCACAAAGATCTGCAT 37 >seq683 Length=758919 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586 |||||| || | || ||| || || ||||| || || | | || || | || || Sbjct 117142 CACCAAGTGCAGAGTGGACTCTTTCTGGATGTTATAGTCTGAGAGAGTGCGGCCATCCTC 117201 Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCAT 35646 |||||| || |||||||| |||| |||||||||| | || | || ||||||||| Sbjct 117202 CAGCTGTTTGCCCGCAAAAATCAGATGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCTTG 117261 Query 35647 GATCTTTTGCTTC-AGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTT 35705 ||| ||| |||| | | || | | ||||| || | | ||||| | ||||| || | Sbjct 117262 GAT-TTTGGCTTTGACATTTTCAATAGTGTCACTGGGCTTGACCTCGAGTGTGATGGTCT 117320 Query 35706 TACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 | ||||||| ||||||||||| |||||||| Sbjct 117321 TGCCCGTCAGGGTTTTCACAAAGATCTGCAT 117351 >seq58060 Length=210 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | ||| | ||||| || | || ||| || ||||||||||| || ||| Sbjct 194 CCACCACGGAGCCTGAGAACCAAGTGAAGGGTCGACTCTTTCTGAATGTTGTAGTCAGCC 135 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || || || |||| || |||||||| || || || || | ||||||||||||| || Sbjct 134 AAAGTGCGACCGTCCTCAAGCTGCTTCCCAGCGAAGATGAGACGCTGCTGGTCCGGTGGG 75 Query 35630 ACGCTCTCCTTGTCCATGATCTT 35652 | || ||||||||| |||||| Sbjct 74 ATGCCTTCCTTGTCCTGGATCTT 52 >seq42717 Length=256 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | ||| | || | |||||| || |||||||||||||||||| || ||| Sbjct 179 CCACCACGAAGCCTGAGAACAAGATGTAAAGTCGACTCCTTTTGAATGTTGTAGTCAGCC 120 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || || || | || || || || || || || || || | || |||||| |||| ||| Sbjct 119 AAAGTCCGGCCATCTTCAAGTTGTTTTCCGGCGAAGATAAGCCTCTGCTGATCCGGAGGG 60 Query 35630 ACGCTCTCCTTGTCCATGATCTT 35652 | || ||||||||| |||||| Sbjct 59 ATGCCTTCCTTGTCCTGGATCTT 37 >seq58 Length=4472761 Score = 89.7 bits (98), Expect = 5e-13 Identities = 161/233 (69%), Gaps = 3/233 (1%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | |||||||| | ||| | || ||||||| |||||||||| || | | Sbjct 4394499 CCACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTGGAATGTTGTAGTCAGAC 4394558 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || | | |||| ||||| || ||||| ||| | ||||| | | || | Sbjct 4394559 A--GTGCGTCCAGCTTCCACTTGCTTGCCAGCAAAGCTCAGTCTTTGCTGAGCAGGAGCA 4394616 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | ||||| ||| ||||||| ||| | | || | | || || | ||| ||| Sbjct 4394617 ATTCCTTCCTTATCCTGGATCTTTGTCTTTATATTTTCTATTGTATCCAAGGGTTCAACC 4394676 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTCTGTG 35742 || | ||||| ||||| || || | ||||||||||| ||||||| |||||| Sbjct 4394677 TCGAGGGTGATAGTTTTCCCAGTAAGGGTTTTCACAAAAATCTGCA-TCTGTG 4394728 >seq19370 Length=533 Score = 87.8 bits (96), Expect = 2e-12 Identities = 127/177 (72%), Gaps = 2/177 (1%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 || |||||||| ||||| ||||||||||| || | || || ||||| || || || || Sbjct 176 TCTTTTTGAATATTGTAGTCGGCCAAGGTACGGCCATCCTCGAGCTGTTTTCCGGCGAAG 117 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTG-CTTCAGAGT 35664 ||||||| |||||| |||| ||| | || ||||||| | ||| ||| | ||| | | | Sbjct 116 ATCAACCTCTGCTGATCCGGAGGGATGCCTTCCTTGT-CTTGAATTTTGGCCTTGACATT 58 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTT 35721 | | |||||||| || ||||| | ||||| || || || || | ||||| Sbjct 57 GTCGATGGTGTCGCTGCTCTCGACCTCGAGAGTGATGGTCTTGCCGGTTAGGGTTTT 1 >seq671 Length=818080 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||| |||| | |||||||||| ||| | || |||||||||||||||||| || | | Sbjct 168642 CCATCACGAAGTCTCAACACCAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGAC 168583 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || || | || ||||||||||| || ||||| |||| | ||||| | | |||| Sbjct 168582 AAAGTACATCAATCTTCCAGCTGCTTGCCAGCAAAGATCAGTCTTTGCTGAGCAGGAGGA 168523 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | ||||| ||| | |||| ||| | | || | | || | | ||| ||| Sbjct 168522 ATTCCTTCCTTATCCTGGGTCTTGGCCTTTATATTTTCTATTGTACCCGAGGGTTCAACC 168463 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | ||||| || || || || | |||||||| || | |||||| Sbjct 168462 TCAAGGGTGATGGTCTTCCCAGTAAGGGTTTTCACGAAAAGCTGCAT 168416 >seq21504 Length=484 Score = 84.2 bits (92), Expect = 2e-11 Identities = 138/195 (71%), Gaps = 8/195 (4%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| || |||||||| |||||||| || || | || || |||||||| || || || Sbjct 433 TCCTTCTGGATGTTGTAGTCGGCCAAAGTGCGACCATCCTCAAGCTGCTTGCCAGCGAAG 374 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAGT 35664 || | ||||||||||||| || | || |||||||||| ||| ||| || |||| | Sbjct 373 ATGAGACGCTGCTGGTCCGGTGGGATGCCCTCCTTGTCC-TGAATTTTGGCTTTCACGTT 315 Query 35665 TGCCACCGTGTC---GCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTT 35721 | | ||||| |||| ||||| || | ||||| || || || || | || || Sbjct 314 ATCAATGGTGTCAGAGCTC---TCCACTTCGAGGGTGATAGTCTTGCCTGTAAGGGTCTT 258 Query 35722 CACAAATATCTGCAT 35736 || || || ||||| Sbjct 257 GACGAAGATTTGCAT 243 >seq40511 Length=266 Score = 82.4 bits (90), Expect = 7e-11 Identities = 129/181 (71%), Gaps = 8/181 (4%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || || | ||||| |||| || || ||||| || || || Sbjct 177 CTCCTTCTGGATGTTGTAGTCAGCGAGAGTTCGGCCGTCCTCGAGTTGCTTTCCGGCGAA 118 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| || ||||||||||| || | | ||||||||| ||| ||| || | || Sbjct 117 AATCAGCCTCTGCTGGTCCGGTGGGATTCCCTCCTTGTCTTGGAT-TTTGGCCTTGACGT 59 Query 35665 TG-CCACCGTGTC---GCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTT 35720 || | | |||||| ||| ||||||||| | |||||||| || || || | ||| | Sbjct 58 TGTCTATCGTGTCAGAGCT---TTCCACCTCGAGTGTGATCGTCTTTCCGGTGAGAGTCT 2 Query 35721 T 35721 | Sbjct 1 T 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450436126310120