Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04]
63,439 sequences; 2,073,344,508 total letters
Query= NC_026511.1
Length=140913
Score E
Sequences producing significant alignments: (Bits) Value
seq19201 145 7e-30
seq25626 132 4e-26
seq475 111 1e-19
seq10281 100 3e-16
seq61295 96.9 3e-15
seq683 95.1 1e-14
seq58060 91.5 1e-13
seq42717 91.5 1e-13
seq58 89.7 5e-13
seq19370 87.8 2e-12
seq671 86.0 6e-12
seq21504 84.2 2e-11
seq40511 82.4 7e-11
>seq19201
Length=536
Score = 145 bits (160), Expect = 7e-30
Identities = 160/213 (75%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 35528 ACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCC 35587
||||| || | ||| |||||| || ||||||||||| || | || | |||| |||
Sbjct 297 ACCAAGTGAAGCGTCGACTCCTTCTGGATGTTGTAATCCGCGAGTGTCCTTCCGTCTTCC 356
Query 35588 AGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATG 35647
|||||||| ||||| ||||||| ||||||||| |||| || | | ||||||||| |
Sbjct 357 AGCTGCTTCCCCGCGAATATCAGCCGCTGCTGATCCGGTGGGATTCCTTCCTTGTCCTGG 416
Query 35648 ATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTA 35707
||||| ||||| | | | | ||||||| |||||| ||||| | || ||||| ||
Sbjct 417 ATCTTCGCCTTCACATTGTCGATCGTGTCGGACGATTCAACCTCTAGGGTTATCGTCTTC 476
Query 35708 CCCGTCAAAGTTTTCACAAATATCTGCATTCTG 35740
||||| | ||||||||||| ||||||||| ||
Sbjct 477 CCCGTTAGGGTTTTCACAAAGATCTGCATTTTG 509
>seq25626
Length=405
Score = 132 bits (146), Expect = 4e-26
Identities = 168/230 (73%), Gaps = 6/230 (3%)
Strand=Plus/Minus
Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569
|||||||| | ||| | || | |||||| || |||||| ||||||||||| |||||
Sbjct 356 CCACCACGAAGCCTGAGAACAAGATGTAAAGTCGACTCCTTCTGAATGTTGTAGTCGGCT 297
Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629
||||| || |||| || |||||||| || || || ||||| | ||||||||||| ||||
Sbjct 296 AAGGTGCGGCCGTCTTCAAGCTGCTTCCCGGCGAAGATCAATCTCTGCTGGTCCGGAGGA 237
Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTC---GCTCGATTCC 35686
| | |||||||||| ||||| ||| | | | | ||||| |||| ||
Sbjct 236 ATACCCTCCTTGTCCTGAATCTTAGCCTTGACGTTATCAATGGTGTCTGAGCTC---TCA 180
Query 35687 ACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736
||||||| || || || || || || | ||| |||||||| ||||||||
Sbjct 179 ACCTCCAAAGTAATAGTCTTTCCGGTGAGAGTCTTCACAAAGATCTGCAT 130
Score = 87.8 bits (96), Expect = 2e-12
Identities = 92/121 (76%), Gaps = 0/121 (0%)
Strand=Plus/Minus
Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569
|| ||||| | ||| | || | |||||| || ||| ||||| |||||||| || |||
Sbjct 128 CCTCCACGAAGCCTGAGAACAAGATGTAAAGTCGACTCTTTTTGGATGTTGTAGTCAGCC 69
Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629
|| |||| |||| || |||||||| || || || ||||| | ||||||||||| ||||
Sbjct 68 AATGTTCTGCCGTCTTCAAGCTGCTTTCCGGCGAAGATCAATCTCTGCTGGTCCGGAGGA 9
Query 35630 A 35630
|
Sbjct 8 A 8
>seq475
Length=1570329
Score = 111 bits (122), Expect = 1e-19
Identities = 142/196 (72%), Gaps = 0/196 (0%)
Strand=Plus/Minus
Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604
||| || || |||||||| || | | || || | || ||||||||||| ||||||||
Sbjct 1256071 CTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCCGCAAA 1256012
Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664
|| | || ||||||||| | || | || |||||| ||| |||||| ||||| | |
Sbjct 1256011 GATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATCTTGGCCTTCACATT 1255952
Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724
| | |||||||| | |||||||||| ||||| || || || |||| || |||||
Sbjct 1255951 CTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCAC 1255892
Query 35725 AAATATCTGCATTCTG 35740
|| || |||||| ||
Sbjct 1255891 GAAAATTTGCATTTTG 1255876
>seq10281
Length=966
Score = 100 bits (110), Expect = 3e-16
Identities = 163/231 (71%), Gaps = 8/231 (3%)
Strand=Plus/Minus
Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569
|||||||| | ||| | ||||| || | ||| ||| || || |||||||| ||||||
Sbjct 261 CCACCACGGAGCCTGAGGACCAAGTGGAGCGTGGACTCTTTCTGGATGTTGTAGTCGGCC 202
Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629
|| ||||| |||| || ||||| || || || || || | || ||||||||||| ||
Sbjct 201 AAAGTTCGGCCGTCTTCGAGCTGTTTGCCGGCGAAGATAAGCCTCTGCTGGTCCGGCGGG 142
Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTC---GCTCGATTC 35685
| || ||||| ||| |||| || ||| | |||| | | ||||| ||| |||
Sbjct 141 ATGCCTTCCTTATCCTGGATC-TTGACTTTAACGTTGTCGATGGTGTCAGAGCT---TTC 86
Query 35686 CACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736
|||||| | ||||| || || || || | ||| || | || |||||||
Sbjct 85 CACCTCGAGGGTGATTGTCTTTCCGGTGAGAGTCTTAATGAAGGTCTGCAT 35
>seq61295
Length=203
Score = 96.9 bits (106), Expect = 3e-15
Identities = 118/160 (74%), Gaps = 6/160 (4%)
Strand=Plus/Minus
Query 35580 CGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCT 35639
|||| || |||||||| || || || ||||||| ||||||||||| ||||| | |||||
Sbjct 193 CGTCTTCAAGCTGCTTCCCGGCGAAGATCAACCTCTGCTGGTCCGGAGGAATACCCTCCT 134
Query 35640 TGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTC---GCTCGATTCCACCTCCACCG 35696
||||| |||||| ||| | | | | ||||| |||| |||||||||| |
Sbjct 133 TGTCCTGGATCTTGGCCTTGACGTTATCAATGGTGTCGGAGCTC---TCCACCTCCAAAG 77
Query 35697 TGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736
| || || || || || | ||| |||||||| ||||||||
Sbjct 76 TAATGGTCTTTCCGGTGAGAGTCTTCACAAAGATCTGCAT 37
>seq683
Length=758919
Score = 95.1 bits (104), Expect = 1e-14
Identities = 149/211 (71%), Gaps = 2/211 (1%)
Strand=Plus/Plus
Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586
|||||| || | || ||| || || ||||| || || | | || || | || ||
Sbjct 117142 CACCAAGTGCAGAGTGGACTCTTTCTGGATGTTATAGTCTGAGAGAGTGCGGCCATCCTC 117201
Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCAT 35646
|||||| || |||||||| |||| |||||||||| | || | || |||||||||
Sbjct 117202 CAGCTGTTTGCCCGCAAAAATCAGATGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCTTG 117261
Query 35647 GATCTTTTGCTTC-AGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTT 35705
||| ||| |||| | | || | | ||||| || | | ||||| | ||||| || |
Sbjct 117262 GAT-TTTGGCTTTGACATTTTCAATAGTGTCACTGGGCTTGACCTCGAGTGTGATGGTCT 117320
Query 35706 TACCCGTCAAAGTTTTCACAAATATCTGCAT 35736
| ||||||| ||||||||||| ||||||||
Sbjct 117321 TGCCCGTCAGGGTTTTCACAAAGATCTGCAT 117351
>seq58060
Length=210
Score = 91.5 bits (100), Expect = 1e-13
Identities = 106/143 (74%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569
|||||||| | ||| | ||||| || | || ||| || ||||||||||| || |||
Sbjct 194 CCACCACGGAGCCTGAGAACCAAGTGAAGGGTCGACTCTTTCTGAATGTTGTAGTCAGCC 135
Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629
|| || || |||| || |||||||| || || || || | ||||||||||||| ||
Sbjct 134 AAAGTGCGACCGTCCTCAAGCTGCTTCCCAGCGAAGATGAGACGCTGCTGGTCCGGTGGG 75
Query 35630 ACGCTCTCCTTGTCCATGATCTT 35652
| || ||||||||| ||||||
Sbjct 74 ATGCCTTCCTTGTCCTGGATCTT 52
>seq42717
Length=256
Score = 91.5 bits (100), Expect = 1e-13
Identities = 106/143 (74%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569
|||||||| | ||| | || | |||||| || |||||||||||||||||| || |||
Sbjct 179 CCACCACGAAGCCTGAGAACAAGATGTAAAGTCGACTCCTTTTGAATGTTGTAGTCAGCC 120
Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629
|| || || | || || || || || || || || || | || |||||| |||| |||
Sbjct 119 AAAGTCCGGCCATCTTCAAGTTGTTTTCCGGCGAAGATAAGCCTCTGCTGATCCGGAGGG 60
Query 35630 ACGCTCTCCTTGTCCATGATCTT 35652
| || ||||||||| ||||||
Sbjct 59 ATGCCTTCCTTGTCCTGGATCTT 37
>seq58
Length=4472761
Score = 89.7 bits (98), Expect = 5e-13
Identities = 161/233 (69%), Gaps = 3/233 (1%)
Strand=Plus/Plus
Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569
|||||||| | |||||||| | ||| | || ||||||| |||||||||| || | |
Sbjct 4394499 CCACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTGGAATGTTGTAGTCAGAC 4394558
Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629
| || || | | |||| ||||| || ||||| ||| | ||||| | | || |
Sbjct 4394559 A--GTGCGTCCAGCTTCCACTTGCTTGCCAGCAAAGCTCAGTCTTTGCTGAGCAGGAGCA 4394616
Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689
| | ||||| ||| ||||||| ||| | | || | | || || | ||| |||
Sbjct 4394617 ATTCCTTCCTTATCCTGGATCTTTGTCTTTATATTTTCTATTGTATCCAAGGGTTCAACC 4394676
Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTCTGTG 35742
|| | ||||| ||||| || || | ||||||||||| ||||||| ||||||
Sbjct 4394677 TCGAGGGTGATAGTTTTCCCAGTAAGGGTTTTCACAAAAATCTGCA-TCTGTG 4394728
>seq19370
Length=533
Score = 87.8 bits (96), Expect = 2e-12
Identities = 127/177 (72%), Gaps = 2/177 (1%)
Strand=Plus/Minus
Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605
|| |||||||| ||||| ||||||||||| || | || || ||||| || || || ||
Sbjct 176 TCTTTTTGAATATTGTAGTCGGCCAAGGTACGGCCATCCTCGAGCTGTTTTCCGGCGAAG 117
Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTG-CTTCAGAGT 35664
||||||| |||||| |||| ||| | || ||||||| | ||| ||| | ||| | | |
Sbjct 116 ATCAACCTCTGCTGATCCGGAGGGATGCCTTCCTTGT-CTTGAATTTTGGCCTTGACATT 58
Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTT 35721
| | |||||||| || ||||| | ||||| || || || || | |||||
Sbjct 57 GTCGATGGTGTCGCTGCTCTCGACCTCGAGAGTGATGGTCTTGCCGGTTAGGGTTTT 1
>seq671
Length=818080
Score = 86.0 bits (94), Expect = 6e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569
||| |||| | |||||||||| ||| | || |||||||||||||||||| || | |
Sbjct 168642 CCATCACGAAGTCTCAACACCAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGAC 168583
Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629
|| || | || ||||||||||| || ||||| |||| | ||||| | | ||||
Sbjct 168582 AAAGTACATCAATCTTCCAGCTGCTTGCCAGCAAAGATCAGTCTTTGCTGAGCAGGAGGA 168523
Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689
| | ||||| ||| | |||| ||| | | || | | || | | ||| |||
Sbjct 168522 ATTCCTTCCTTATCCTGGGTCTTGGCCTTTATATTTTCTATTGTACCCGAGGGTTCAACC 168463
Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736
|| | ||||| || || || || | |||||||| || | ||||||
Sbjct 168462 TCAAGGGTGATGGTCTTCCCAGTAAGGGTTTTCACGAAAAGCTGCAT 168416
>seq21504
Length=484
Score = 84.2 bits (92), Expect = 2e-11
Identities = 138/195 (71%), Gaps = 8/195 (4%)
Strand=Plus/Minus
Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605
||||| || |||||||| |||||||| || || | || || |||||||| || || ||
Sbjct 433 TCCTTCTGGATGTTGTAGTCGGCCAAAGTGCGACCATCCTCAAGCTGCTTGCCAGCGAAG 374
Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAGT 35664
|| | ||||||||||||| || | || |||||||||| ||| ||| || |||| |
Sbjct 373 ATGAGACGCTGCTGGTCCGGTGGGATGCCCTCCTTGTCC-TGAATTTTGGCTTTCACGTT 315
Query 35665 TGCCACCGTGTC---GCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTT 35721
| | ||||| |||| ||||| || | ||||| || || || || | || ||
Sbjct 314 ATCAATGGTGTCAGAGCTC---TCCACTTCGAGGGTGATAGTCTTGCCTGTAAGGGTCTT 258
Query 35722 CACAAATATCTGCAT 35736
|| || || |||||
Sbjct 257 GACGAAGATTTGCAT 243
>seq40511
Length=266
Score = 82.4 bits (90), Expect = 7e-11
Identities = 129/181 (71%), Gaps = 8/181 (4%)
Strand=Plus/Minus
Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604
|||||| || |||||||| || || | ||||| |||| || || ||||| || || ||
Sbjct 177 CTCCTTCTGGATGTTGTAGTCAGCGAGAGTTCGGCCGTCCTCGAGTTGCTTTCCGGCGAA 118
Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664
|||| || ||||||||||| || | | ||||||||| ||| ||| || | ||
Sbjct 117 AATCAGCCTCTGCTGGTCCGGTGGGATTCCCTCCTTGTCTTGGAT-TTTGGCCTTGACGT 59
Query 35665 TG-CCACCGTGTC---GCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTT 35720
|| | | |||||| ||| ||||||||| | |||||||| || || || | ||| |
Sbjct 58 TGTCTATCGTGTCAGAGCT---TTCCACCTCGAGTGTGATCGTCTTTCCGGTGAGAGTCT 2
Query 35721 T 35721
|
Sbjct 1 T 1
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 450436126310120
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