Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04] 63,439 sequences; 2,073,344,508 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq782 226 4e-54 seq3 138 2e-27 seq93 132 7e-26 seq514 113 6e-20 seq17663 105 9e-18 seq794 84.2 3e-11 >seq782 Length=486663 Score = 226 bits (250), Expect = 4e-54 Identities = 328/460 (71%), Gaps = 11/460 (2%) Strand=Plus/Minus Query 68395 GCGGGTTTTGTACGTAGATAGTACATACCGGTTTTCAGACCTAGACTCCATCCGTAGAAA 68454 || ||| ||| | || || |||||||| || || | ||| | |||| |||||||| Sbjct 446739 GCTGGTGCTGTCCTTAAGTAATACATACCAGTCTTTAAACCCTGCTTCCAGCCGTAGAAG 446680 Query 68455 TGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATATTCATCGATTGACTT 68514 |||||||| || |||||| ||| | | | || || || |||| || || ||| Sbjct 446679 TGCATACTAGTGAGTTTGCCATAGTTAGCA------ATGTGGATGTTCAGAGACTGGCTT 446626 Query 68515 TGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCTTTTGAGGAATTTCC 68574 ||||| |||||||| ||||| || || ||||| || | ||| | || |||| |||||| Sbjct 446625 TGATCAATGAAAGCACCTCTCTCAGCTGCCATCTTGAGAATGGTTTTCTGAGAGATTTCC 446566 Query 68575 CAAATAGTCTTAAAAATCTGTTTGATATCATCTGGAAGGCTCGTATTTTGAATGGATCCA 68634 || | ||||||| ||| || || | ||||| |||| || || | ||||| | Sbjct 446565 CATACAGTCTTATAAAGTTGCTTCAAGTCATCAGGAATT-TCTGATATGCTCTGGATAGA 446507 Query 68635 -CCATCGGATATAATTAT---ATTCTTGATCTCATCATTCCACAATTTTCTCTCCGTTAA 68690 |||| | || ||| || ||| || ||||| ||||||||||| ||| | | Sbjct 446506 GCCATTGCATGCAATAATCTGATTTTTCATCTCTTCATTCCACAAGCCCTGCTCAATCAG 446447 Query 68691 AACTCTAAGGAGATGCGGATTAACTATTTGAAATTCCCCAGATAACACTCTACGAGTGTA 68750 | || | || | || ||||| || || |||||||| || || || ||||| |||||||| Sbjct 446446 ATCTTTCAGTAAGTGAGGATTTACAATCTGAAATTCTCCTGACAAGACTCTGCGAGTGTA 446387 Query 68751 AATATTACTGGTATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGC 68810 || || |||||| ||||||| | || |||||||||||||| || ||||||||||| || Sbjct 446386 GATGTTGCTGGTACATGGTTCAATGGACTCATTATTTCCCAGGATCTGAGCAGTTGAAGC 446327 Query 68811 AGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCA 68850 ||| ||||| || || | | |||||||||||| | |||| Sbjct 446326 AGTAGGCATCGGGGCAATAAGTAAACTATTTCTTATACCA 446287 >seq3 Length=9954913 Score = 138 bits (152), Expect = 2e-27 Identities = 106/126 (84%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 |||||||||| ||||| | ||| || ||||||||||| |||||||| || || || || | Sbjct 27230 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 27171 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 ||||||| ||||| | |||||||| |||||||||||||| ||||||||||| ||||| | Sbjct 27170 TGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCTACTGCGGCAAAAG 27111 Query 39759 CAACAA 39764 | |||| Sbjct 27110 CTACAA 27105 >seq93 Length=2374459 Score = 132 bits (146), Expect = 7e-26 Identities = 109/133 (82%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 68719 TGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 68778 |||||||| || || || ||||| |||||||| || || |||||||||||||| | || Sbjct 38943 TGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTGCTGGTATATGGTTCAATGGAC 39002 Query 68779 TCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTA 68838 |||||||||||||| || ||||||||||| ||||| ||||| || || | | ||||||| Sbjct 39003 TCATTATTTCCCAGGATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAACTA 39062 Query 68839 TTTCTAAGACCAT 68851 ||||| | ||||| Sbjct 39063 TTTCTTATACCAT 39075 Score = 86.0 bits (94), Expect = 9e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 69507 ATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACA 69566 ||||||| || ||||| ||||||||||| ||||||| |||||||| ||||||||||| Sbjct 52055 ATATAGCTTCTCAAATTCCTCTCCCCAAACCTCATCCAGACCAGGACACTCATTTGGACA 52114 Query 69567 CATCAATGACCA 69578 |||||| ||||| Sbjct 52115 CATCAAAGACCA 52126 >seq514 Length=1022489 Score = 113 bits (124), Expect = 6e-20 Identities = 98/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 39641 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTG 39700 |||||||| || || | ||| || ||||| |||||||||||||| ||||| | || || Sbjct 284463 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATAAGACCTCTTTTCTTT 284522 Query 39701 AGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCA 39760 | ||| ||||| |||||||||||||| || ||||| || |||||||| || ||||| || Sbjct 284523 AACCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGGCC 284582 Query 39761 AC 39762 || Sbjct 284583 AC 284584 >seq17663 Length=579 Score = 105 bits (116), Expect = 9e-18 Identities = 245/364 (67%), Gaps = 4/364 (1%) Strand=Plus/Plus Query 39617 CAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGT 39676 || || |||||||| || || ||||||||||| || | ||||| || || || | Sbjct 217 CAAGCAAAGTCACAGTGAAGCCCCTCATCTCTGGATATAAGCTCGTTTGAGAAAGTCAAA 276 Query 39677 CCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAG-ATCCAGAAAAGAA 39735 || ||||| ||||| | ||| || ||||| || |||||| |||||| ||| || ||||| Sbjct 277 CCCGGCATAAGACCTCTCTTCTTAAGCCAGAAGATGGCA-CAAAAGCTTCCCGAGAAGAA 335 Query 39736 GATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTATGTAT 39795 ||| ||||| || |||||| ||||| || ||| | | || || | | || || Sbjct 336 GATTCCTTCGACGCATGCAAAAGCAACCAGCCTCACAGCAAAAGACATAGGACTTTGAAT 395 Query 39796 CCACTTCTGTGC-CCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAA 39854 ||| ||| | ||| | || ||||| | ||||| || || || |||||||| | Sbjct 396 CCA-ATCTAAACACCATTTTGCCTTCTTGGAAATGCAAGGAATGGTCTCGATAGCATTGA 454 Query 39855 AGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTT 39914 | || || || || | ||| || | | |||| || | | | || ||||| | Sbjct 455 ACAGTCTATCCTTCTCCTGCGAATCCTTTATAAATGTCTCCAGAAGTTGGCTGTACATCT 514 Query 39915 CTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTT 39974 | ||||| ||||| || || || || ||||| || || ||| | || |||| || || Sbjct 515 CCGAATGAATGTTCTCCATGGCAATTTGAAACCCATAGAAAGCACGAGCCTCAGGAACTT 574 Query 39975 GTAC 39978 | || Sbjct 575 GGAC 578 >seq794 Length=452738 Score = 84.2 bits (92), Expect = 3e-11 Identities = 180/266 (68%), Gaps = 6/266 (2%) Strand=Plus/Minus Query 37338 TTATTTCAGTCCTGTTGATCCAAACCCT--TGAGCTCCTCTATCTGTACCATCTAGAGAT 37395 ||| ||| ||| || || ||||| ||| ||| | ||| | | || |||||| | | Sbjct 433763 TTAATTCTTTCCAGTGGAACCAAAACCTCCTGAACCCCTTTTTA-GTGTCATCTAAAACT 433705 Query 37396 TGTACTTCATTCAGATCAGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCG 37455 || ||||| | | ||||||||| | || | || | | || ||||| || |||| || Sbjct 433704 TGAACTTCCTCTATTTCAGGATAAAAAATCCATTCACAAATGAGCTGTGCAATTCGGTCA 433645 Query 37456 CCCGTATTTATTTTAAAATTACATTTTCCATTATTTATCAGAATGACTCCAATATTCCCC 37515 ||| | || | || ||| || || ||| || | ||| | || |||||||| || Sbjct 433644 CCCTTTTTGACTTCAAACTTTTCCTTGCCAAAATCAAACAGTACAACACCAATATTTCCT 433585 Query 37516 CTATAATCTTCATCGATTACTCCGCCTCCTACATCAAT---ACCTTTTAGAGACAAACCC 37572 || ||||||||||| || || || ||||||| | || |||| || ||| || Sbjct 433584 CTGTAATCTTCATCTATGACACCAGCTCCTACGTATATGAAGTGTTTTGTAGCCAATCCA 433525 Query 37573 GATCTAGGAGCTATTCTTCCATAACA 37598 || | ||||||| ||||||||| || Sbjct 433524 GAACGTGGAGCTACTCTTCCATAGCA 433499 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686364089907960