Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04] 63,439 sequences; 2,073,344,508 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq7730 150 1e-31 seq17663 138 9e-28 seq3 111 1e-19 seq514 102 6e-17 seq3926 93.3 3e-14 >seq7730 Length=1237 Score = 150 bits (166), Expect = 1e-31 Identities = 329/490 (67%), Gaps = 2/490 (0%) Strand=Plus/Plus Query 40676 CAATTTGAGAAATCAGTTTCCGTTGCTAACTACaaaaaaaaTGTTTTGGAAAGGCATTGC 40735 ||||||| | | | ||||| | || || ||||| | | | || |||| ||| ||| Sbjct 306 CAATTTGCGCAGGAATTTTCCACTTCTGACGACAAAGAGAGTATTCTGGAGAGGTGTTGT 365 Query 40736 AGAAGAACTGTTATGGTTTATCAAAGGTTGTACTAATGCTAAGAAATTATCAGAAAGAGG 40795 || ||||| | ||||| || | |||| || ||||| ||| | | ||||| || Sbjct 366 TGAGGAACTTCTTTGGTTCATAAGCGGTTCAACCAATGCAAAGTTACTTCAAGAAAAGGG 425 Query 40796 AGTGCACATTTGGAATGCGCACAGTTCTAAAACATATTTGTCTAGCATAGGATTACAAGA 40855 | || || ||| ||| | | || | ||| ||| | | | || ||| | || Sbjct 426 TATCCATATATGGGATGGGAATGCGTCAAGAACTTATCTTGATGGTATTGGACTGACTGA 485 Query 40856 TAGGGATGAAGGTGATCTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCAAA 40915 || || |||||||| ||||| || |||||||||||||| | | |||| ||||| || || Sbjct 486 GAGAGAAGAAGGTGACCTTGGACCCGTTTATGGATTTCAATGGAGACACTTTGGTGCTAA 545 Query 40916 ATATGACAC-TATGTACTCTGATTATACCAATAAAGGAATGGATCAATTACAGTGCGTTA 40974 || ||| |||| | |||||||||| ||||| | ||||| | | || | Sbjct 546 GTAC-ACAGATATGCATGCTGATTATACTGGCCAAGGATTTGATCAGCTCTCGGATGTAA 604 Query 40975 TAGATACGATTAAATCCGATCCCGATAGCCGACGTATAATATTGTGCGCGTGGAACCCAA 41034 | | | ||| || | |||| ||| ||||| |||||| ||| || ||||| || Sbjct 605 TTAACAAGATCAAGAACAATCCTGATGATCGACGGATAATAATGTCGGCTTGGAATCCTT 664 Query 41035 CGGACGTACATTTGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCA 41094 | ||| | | ||||||||| | || || || || |||| |||||||| ||| | Sbjct 665 CTGACCTTAAGTTGATGGCACTTCCTCCATGCCACATGTTTGCGCAGTTTTATGTTACAA 724 Query 41095 ATGGTGAACTGTCATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGT 41154 |||| || || || |||||| ||||||| | |||| || ||||| || || || |||| Sbjct 725 ATGGAGAGCTTTCGTGTCAAATGTATCAGCGCTCAGCCGATATGGGTCTTGGTGTACCGT 784 Query 41155 TTAACATAGC 41164 ||||||| || Sbjct 785 TTAACATTGC 794 >seq17663 Length=579 Score = 138 bits (152), Expect = 9e-28 Identities = 250/364 (69%), Gaps = 4/364 (1%) Strand=Plus/Minus Query 43919 GTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCAT 43978 || ||| | || || || || ||| |||||||||||||||||||| || || |||||| Sbjct 578 GTCCAAGTTCCTGAGGCTCGTGCTTTCTATGGGTTTCAAATTGCCATGGAGAACATTCAT 519 Query 43979 TCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGCATCGA 44038 ||||| |||||||| | || | || || | || || ||| ||| |||||| || || Sbjct 518 TCGGAGATGTACAGCCAACTTCTGGAGACATTTATAAAGGATTCGCAGGAGAAGGATAGA 459 Query 44039 TTGTTTAATGCGATAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAA 44098 |||| ||||| || || || | ||| ||| | || ||| | ||| | | Sbjct 458 CTGTTCAATGCTATCGAGACCATTCCTTGCATTTCCAAGAAGGCAAAATGGTGTTTAGAT 399 Query 44099 TGGAT--AAATTCAAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAG 44156 ||||| ||| || ||| ||||||| | | || || || |||||| || |||| Sbjct 398 TGGATTCAAAGTCCTATG--TCTTTTGCTGTGAGGCTGGTTGCTTTTGCATGCGTCGAAG 341 Query 44157 GCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGC 44216 | || ||||| || ||| ||| ||||| || ||| | ||||| ||||| | |||| Sbjct 340 GAATCTTCTTCTCGGGAAGCTTTTGTGCCATCTTCTGGCTTAAGAAGAGAGGTCTTATGC 281 Query 44217 CTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTG 44276 | || ||||| || ||||| ||| | ||| | ||||| || | || || || |||| Sbjct 280 CGGGTTTGACTTTCTCAAACGAGCTTATATCCAGAGATGAGGGGCTTCACTGTGACTTTG 221 Query 44277 CTTG 44280 |||| Sbjct 220 CTTG 217 >seq3 Length=9954913 Score = 111 bits (122), Expect = 1e-19 Identities = 97/118 (82%), Gaps = 2/118 (2%) Strand=Plus/Plus Query 43904 CGGTTTGCGCAAGAAGTTCA-ATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGC 43962 |||||| ||||||||||| |||| ||||||| || ||||| ||||| || |||||||| Sbjct 25213 CGGTTTAGCCAAGAAGTTCAGATTA-CAGAAGCCCGCTGTTTCTATGGCTTCCAAATTGC 25271 Query 43963 CATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 ||| ||||| || ||||| || ||||| ||||| || || ||||| ||||| |||||| Sbjct 25272 CATGGAAAACATACATTCTGAGATGTATAGTCTCCTCATTGATACTTACATTAAAGAT 25329 Score = 93.3 bits (102), Expect = 3e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 44123 GGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCG 44182 |||||||| |||| || ||||| | || ||||| || |||||||| || || ||||| Sbjct 27095 GGAGAACGTGTTGTAGCTTTTGCCGCAGTAGAAGGAATCTTCTTTTCTGGTTCTTTTGCA 27154 Query 44183 GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTA 44242 | ||||| ||| | ||||||||||| |||||||||| | || ||||| ||||| | Sbjct 27155 TCAATATTCTGGCTCAAGAAACGAGGACTGATGCCTGGCCTCACATTTTCCAATGAACTT 27214 Query 44243 ATAAGTCGTGATGA 44256 || || | ||||| Sbjct 27215 ATTAGCAGAGATGA 27228 Score = 93.3 bits (102), Expect = 3e-14 Identities = 80/99 (81%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 44489 GTACAAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTT 44548 ||| ||||||||||||| || ||||| |||||||| ||||||| || || ||||| ||| Sbjct 28482 GTAGAAAACCCGTTTGACTTCATGGAGAATATTTCACTGGAAGGGAAGACTAACTTCTTT 28541 Query 44549 GAAAAACGCGTTGGAGAATATCAGCGAATGGGCGTCATG 44587 ||||| | || || || |||||| ||||||| || ||| Sbjct 28542 GAAAAGAGAGTAGGCGAGTATCAGAGAATGGGAGTGATG 28580 >seq514 Length=1022489 Score = 102 bits (112), Expect = 6e-17 Identities = 97/124 (78%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 44135 GTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGG 44194 || || ||||| | ||| ||||| |||||||| || ||||| ||||| || ||||| ||| Sbjct 284584 GTGGCCTTTGCTGCTGTAGAAGGAATTTTCTTCTCGGGATCTTTTGCTGCTATATTCTGG 284525 Query 44195 TTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGAT 44254 ||||||||| ||||| | |||||||| | || ||||| ||||| | || || | ||| Sbjct 284524 TTAAAGAAAAGAGGTCTTATGCCTGGACTCACTTTTTCCAATGAACTCATCAGCAGAGAT 284465 Query 44255 GAAG 44258 |||| Sbjct 284464 GAAG 284461 Score = 89.7 bits (98), Expect = 4e-13 Identities = 69/82 (84%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 44493 AAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAA 44552 |||| || ||||||||||||||||| ||||| || ||||| |||||||| || ||||| | Sbjct 275202 AAAATCCCTTTGATTTTATGGAAAACATTTCTTTAGAAGGGAAAACAAATTTCTTTGAGA 275143 Query 44553 AACGCGTTGGAGAATATCAGCG 44574 |||| ||| ||| |||||||| Sbjct 275142 AACGAGTTTCAGAGTATCAGCG 275121 Score = 87.8 bits (96), Expect = 1e-12 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 43700 TTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCG 43759 |||||| | |||||||| || || | |||||| ||| ||||||| ||| | ||||||||| Sbjct 301540 TTTGTCATCTTTCCAATCCAGTACCCTGACATTTGGAAAATGTATAAACAGGCACAGGCG 301481 Query 43760 TCATTTTGGACAGCAGAAGAAGT 43782 || || |||||||||||||| || Sbjct 301480 TCCTTCTGGACAGCAGAAGAGGT 301458 >seq3926 Length=2432 Score = 93.3 bits (102), Expect = 3e-14 Identities = 298/461 (65%), Gaps = 10/461 (2%) Strand=Plus/Plus Query 19260 AGAGTTTTCTGAAATCTTTCGTAGAGCATTTGTGTCGCGTGTTTTTTCTGCAGATGTCAT 19319 ||||||| |||| || ||| | ||||| |||| || ||||| ||| || | |||||| Sbjct 719 AGAGTTTGCTGATATATTTAGGAGAGCTTTTGCTTCTCGTGTATTTCCTCCTCATGTCAC 778 Query 19320 TAAACAATTGGGATGTAAACATGTTCGTGGACTTTTGCTTTATGGGCCACCGGGTTGTGG 19379 | |||||| || || ||| ||| | | |||| ||| || || ||| ||| Sbjct 779 GAGCAGATTGGGGATAAAGCACGTTAAGGGAATGCTTCTTTTTGGACCTCCTGGTACTGG 838 Query 19380 AAAAACATTAATTGCGAGAGAACTTAGTAAATTACTTACAAAACAACCTCCCAAAATTGT 19439 ||||| | || || | || || | ||| | || | | | ||| || || || Sbjct 839 CAAAACCCTGATGGCACGGCAAATTGGAAAAATGCTGAATGGAAAGGATCCAAAGATCGT 898 Query 19440 AAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAATGTACGACGTTT 19499 ||||||||||| | | | || | ||| ||| | | ||| ||||||| ||| || Sbjct 899 TAATGGTCCTGAGGTGCTGAGCAAGTTTGTTGGTGAGACAGAAAAAAATGTGCGAGACTT 958 Query 19500 GTTTGCTGACGCTGAAGAAGAACAAA--AACGTTTAGGGCGCAAAAGTTCTTTGCACATT 19557 |||||||| ||||| |||| || | | | || | || ||| ||||| | Sbjct 959 ATTTGCTGATGCTGAGCAAGACCAGAGGACCCTTGGTGATGC--TAGTGAGTTGCATGTC 1016 Query 19558 ATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTC------TGGTGTAAAT 19611 || || | |||||| | || || || |||||| ||||||||| | || | Sbjct 1017 ATTATTTTTGATGAAATTGATGCTATTTGTAAGTCAAGAGGTTCAACCAGAGATGGCACA 1076 Query 19612 GGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTTAACCAACTG 19671 || || ||||| | | |||| || || || || |||| |||| ||||| | || Sbjct 1077 GGTGTCCATGATAGTATTGTAAACCAGCTTTTGACAAAGATAGATGGTGTGGAGGCCTTG 1136 Query 19672 AATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATT 19712 || ||| |||| ||||||| ||||| || ||| ||| || Sbjct 1137 AACAATGTTTTGCTTATTGGAATGACAAACAGAAAGGATTT 1177 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397148701801195