Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04]
63,439 sequences; 2,073,344,508 total letters
Query= NC_027778.1
Length=124244
Score E
Sequences producing significant alignments: (Bits) Value
seq7730 150 1e-31
seq17663 138 9e-28
seq3 111 1e-19
seq514 102 6e-17
seq3926 93.3 3e-14
>seq7730
Length=1237
Score = 150 bits (166), Expect = 1e-31
Identities = 329/490 (67%), Gaps = 2/490 (0%)
Strand=Plus/Plus
Query 40676 CAATTTGAGAAATCAGTTTCCGTTGCTAACTACaaaaaaaaTGTTTTGGAAAGGCATTGC 40735
||||||| | | | ||||| | || || ||||| | | | || |||| ||| |||
Sbjct 306 CAATTTGCGCAGGAATTTTCCACTTCTGACGACAAAGAGAGTATTCTGGAGAGGTGTTGT 365
Query 40736 AGAAGAACTGTTATGGTTTATCAAAGGTTGTACTAATGCTAAGAAATTATCAGAAAGAGG 40795
|| ||||| | ||||| || | |||| || ||||| ||| | | ||||| ||
Sbjct 366 TGAGGAACTTCTTTGGTTCATAAGCGGTTCAACCAATGCAAAGTTACTTCAAGAAAAGGG 425
Query 40796 AGTGCACATTTGGAATGCGCACAGTTCTAAAACATATTTGTCTAGCATAGGATTACAAGA 40855
| || || ||| ||| | | || | ||| ||| | | | || ||| | ||
Sbjct 426 TATCCATATATGGGATGGGAATGCGTCAAGAACTTATCTTGATGGTATTGGACTGACTGA 485
Query 40856 TAGGGATGAAGGTGATCTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCAAA 40915
|| || |||||||| ||||| || |||||||||||||| | | |||| ||||| || ||
Sbjct 486 GAGAGAAGAAGGTGACCTTGGACCCGTTTATGGATTTCAATGGAGACACTTTGGTGCTAA 545
Query 40916 ATATGACAC-TATGTACTCTGATTATACCAATAAAGGAATGGATCAATTACAGTGCGTTA 40974
|| ||| |||| | |||||||||| ||||| | ||||| | | || |
Sbjct 546 GTAC-ACAGATATGCATGCTGATTATACTGGCCAAGGATTTGATCAGCTCTCGGATGTAA 604
Query 40975 TAGATACGATTAAATCCGATCCCGATAGCCGACGTATAATATTGTGCGCGTGGAACCCAA 41034
| | | ||| || | |||| ||| ||||| |||||| ||| || ||||| ||
Sbjct 605 TTAACAAGATCAAGAACAATCCTGATGATCGACGGATAATAATGTCGGCTTGGAATCCTT 664
Query 41035 CGGACGTACATTTGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCA 41094
| ||| | | ||||||||| | || || || || |||| |||||||| ||| |
Sbjct 665 CTGACCTTAAGTTGATGGCACTTCCTCCATGCCACATGTTTGCGCAGTTTTATGTTACAA 724
Query 41095 ATGGTGAACTGTCATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGT 41154
|||| || || || |||||| ||||||| | |||| || ||||| || || || ||||
Sbjct 725 ATGGAGAGCTTTCGTGTCAAATGTATCAGCGCTCAGCCGATATGGGTCTTGGTGTACCGT 784
Query 41155 TTAACATAGC 41164
||||||| ||
Sbjct 785 TTAACATTGC 794
>seq17663
Length=579
Score = 138 bits (152), Expect = 9e-28
Identities = 250/364 (69%), Gaps = 4/364 (1%)
Strand=Plus/Minus
Query 43919 GTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCAT 43978
|| ||| | || || || || ||| |||||||||||||||||||| || || ||||||
Sbjct 578 GTCCAAGTTCCTGAGGCTCGTGCTTTCTATGGGTTTCAAATTGCCATGGAGAACATTCAT 519
Query 43979 TCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGCATCGA 44038
||||| |||||||| | || | || || | || || ||| ||| |||||| || ||
Sbjct 518 TCGGAGATGTACAGCCAACTTCTGGAGACATTTATAAAGGATTCGCAGGAGAAGGATAGA 459
Query 44039 TTGTTTAATGCGATAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAA 44098
|||| ||||| || || || | ||| ||| | || ||| | ||| | |
Sbjct 458 CTGTTCAATGCTATCGAGACCATTCCTTGCATTTCCAAGAAGGCAAAATGGTGTTTAGAT 399
Query 44099 TGGAT--AAATTCAAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAG 44156
||||| ||| || ||| ||||||| | | || || || |||||| || ||||
Sbjct 398 TGGATTCAAAGTCCTATG--TCTTTTGCTGTGAGGCTGGTTGCTTTTGCATGCGTCGAAG 341
Query 44157 GCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGC 44216
| || ||||| || ||| ||| ||||| || ||| | ||||| ||||| | ||||
Sbjct 340 GAATCTTCTTCTCGGGAAGCTTTTGTGCCATCTTCTGGCTTAAGAAGAGAGGTCTTATGC 281
Query 44217 CTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTG 44276
| || ||||| || ||||| ||| | ||| | ||||| || | || || || ||||
Sbjct 280 CGGGTTTGACTTTCTCAAACGAGCTTATATCCAGAGATGAGGGGCTTCACTGTGACTTTG 221
Query 44277 CTTG 44280
||||
Sbjct 220 CTTG 217
>seq3
Length=9954913
Score = 111 bits (122), Expect = 1e-19
Identities = 97/118 (82%), Gaps = 2/118 (2%)
Strand=Plus/Plus
Query 43904 CGGTTTGCGCAAGAAGTTCA-ATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGC 43962
|||||| ||||||||||| |||| ||||||| || ||||| ||||| || ||||||||
Sbjct 25213 CGGTTTAGCCAAGAAGTTCAGATTA-CAGAAGCCCGCTGTTTCTATGGCTTCCAAATTGC 25271
Query 43963 CATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020
||| ||||| || ||||| || ||||| ||||| || || ||||| ||||| ||||||
Sbjct 25272 CATGGAAAACATACATTCTGAGATGTATAGTCTCCTCATTGATACTTACATTAAAGAT 25329
Score = 93.3 bits (102), Expect = 3e-14
Identities = 101/134 (75%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 44123 GGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCG 44182
|||||||| |||| || ||||| | || ||||| || |||||||| || || |||||
Sbjct 27095 GGAGAACGTGTTGTAGCTTTTGCCGCAGTAGAAGGAATCTTCTTTTCTGGTTCTTTTGCA 27154
Query 44183 GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTA 44242
| ||||| ||| | ||||||||||| |||||||||| | || ||||| ||||| |
Sbjct 27155 TCAATATTCTGGCTCAAGAAACGAGGACTGATGCCTGGCCTCACATTTTCCAATGAACTT 27214
Query 44243 ATAAGTCGTGATGA 44256
|| || | |||||
Sbjct 27215 ATTAGCAGAGATGA 27228
Score = 93.3 bits (102), Expect = 3e-14
Identities = 80/99 (81%), Gaps = 0/99 (0%)
Strand=Plus/Plus
Query 44489 GTACAAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTT 44548
||| ||||||||||||| || ||||| |||||||| ||||||| || || ||||| |||
Sbjct 28482 GTAGAAAACCCGTTTGACTTCATGGAGAATATTTCACTGGAAGGGAAGACTAACTTCTTT 28541
Query 44549 GAAAAACGCGTTGGAGAATATCAGCGAATGGGCGTCATG 44587
||||| | || || || |||||| ||||||| || |||
Sbjct 28542 GAAAAGAGAGTAGGCGAGTATCAGAGAATGGGAGTGATG 28580
>seq514
Length=1022489
Score = 102 bits (112), Expect = 6e-17
Identities = 97/124 (78%), Gaps = 0/124 (0%)
Strand=Plus/Minus
Query 44135 GTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGG 44194
|| || ||||| | ||| ||||| |||||||| || ||||| ||||| || ||||| |||
Sbjct 284584 GTGGCCTTTGCTGCTGTAGAAGGAATTTTCTTCTCGGGATCTTTTGCTGCTATATTCTGG 284525
Query 44195 TTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGAT 44254
||||||||| ||||| | |||||||| | || ||||| ||||| | || || | |||
Sbjct 284524 TTAAAGAAAAGAGGTCTTATGCCTGGACTCACTTTTTCCAATGAACTCATCAGCAGAGAT 284465
Query 44255 GAAG 44258
||||
Sbjct 284464 GAAG 284461
Score = 89.7 bits (98), Expect = 4e-13
Identities = 69/82 (84%), Gaps = 0/82 (0%)
Strand=Plus/Minus
Query 44493 AAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAA 44552
|||| || ||||||||||||||||| ||||| || ||||| |||||||| || ||||| |
Sbjct 275202 AAAATCCCTTTGATTTTATGGAAAACATTTCTTTAGAAGGGAAAACAAATTTCTTTGAGA 275143
Query 44553 AACGCGTTGGAGAATATCAGCG 44574
|||| ||| ||| ||||||||
Sbjct 275142 AACGAGTTTCAGAGTATCAGCG 275121
Score = 87.8 bits (96), Expect = 1e-12
Identities = 69/83 (83%), Gaps = 0/83 (0%)
Strand=Plus/Minus
Query 43700 TTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCG 43759
|||||| | |||||||| || || | |||||| ||| ||||||| ||| | |||||||||
Sbjct 301540 TTTGTCATCTTTCCAATCCAGTACCCTGACATTTGGAAAATGTATAAACAGGCACAGGCG 301481
Query 43760 TCATTTTGGACAGCAGAAGAAGT 43782
|| || |||||||||||||| ||
Sbjct 301480 TCCTTCTGGACAGCAGAAGAGGT 301458
>seq3926
Length=2432
Score = 93.3 bits (102), Expect = 3e-14
Identities = 298/461 (65%), Gaps = 10/461 (2%)
Strand=Plus/Plus
Query 19260 AGAGTTTTCTGAAATCTTTCGTAGAGCATTTGTGTCGCGTGTTTTTTCTGCAGATGTCAT 19319
||||||| |||| || ||| | ||||| |||| || ||||| ||| || | ||||||
Sbjct 719 AGAGTTTGCTGATATATTTAGGAGAGCTTTTGCTTCTCGTGTATTTCCTCCTCATGTCAC 778
Query 19320 TAAACAATTGGGATGTAAACATGTTCGTGGACTTTTGCTTTATGGGCCACCGGGTTGTGG 19379
| |||||| || || ||| ||| | | |||| ||| || || ||| |||
Sbjct 779 GAGCAGATTGGGGATAAAGCACGTTAAGGGAATGCTTCTTTTTGGACCTCCTGGTACTGG 838
Query 19380 AAAAACATTAATTGCGAGAGAACTTAGTAAATTACTTACAAAACAACCTCCCAAAATTGT 19439
||||| | || || | || || | ||| | || | | | ||| || || ||
Sbjct 839 CAAAACCCTGATGGCACGGCAAATTGGAAAAATGCTGAATGGAAAGGATCCAAAGATCGT 898
Query 19440 AAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAATGTACGACGTTT 19499
||||||||||| | | | || | ||| ||| | | ||| ||||||| ||| ||
Sbjct 899 TAATGGTCCTGAGGTGCTGAGCAAGTTTGTTGGTGAGACAGAAAAAAATGTGCGAGACTT 958
Query 19500 GTTTGCTGACGCTGAAGAAGAACAAA--AACGTTTAGGGCGCAAAAGTTCTTTGCACATT 19557
|||||||| ||||| |||| || | | | || | || ||| ||||| |
Sbjct 959 ATTTGCTGATGCTGAGCAAGACCAGAGGACCCTTGGTGATGC--TAGTGAGTTGCATGTC 1016
Query 19558 ATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTC------TGGTGTAAAT 19611
|| || | |||||| | || || || |||||| ||||||||| | || |
Sbjct 1017 ATTATTTTTGATGAAATTGATGCTATTTGTAAGTCAAGAGGTTCAACCAGAGATGGCACA 1076
Query 19612 GGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTTAACCAACTG 19671
|| || ||||| | | |||| || || || || |||| |||| ||||| | ||
Sbjct 1077 GGTGTCCATGATAGTATTGTAAACCAGCTTTTGACAAAGATAGATGGTGTGGAGGCCTTG 1136
Query 19672 AATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATT 19712
|| ||| |||| ||||||| ||||| || ||| ||| ||
Sbjct 1137 AACAATGTTTTGCTTATTGGAATGACAAACAGAAAGGATTT 1177
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397148701801195
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |