Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04] 63,439 sequences; 2,073,344,508 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq25626 105 6e-18 seq29432 104 2e-17 seq10281 100 2e-16 seq273 95.1 1e-14 seq21504 93.3 4e-14 seq19201 93.3 4e-14 seq683 89.7 4e-13 >seq25626 Length=405 Score = 105 bits (116), Expect = 6e-18 Identities = 148/208 (71%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 27044 ATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTG 27103 |||||| || || || || ||||| ||||||||| | | |||| ||||||| ||||| Sbjct 333 ATGTAAAGTCGACTCCTTCTGAATGTTGTAGTCGGCTAAGGTGCGGCCGTCTTCAAGCTG 274 Query 27104 TTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTT 27163 || |||||| | || | | ||| || ||||| || | |||||| || || ||||| Sbjct 273 CTTCCCGGCGAAGATCAATCTCTGCTGGTCCGGAGGAATACCCTCCTTGTCCTGAATCTT 214 Query 27164 GTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGT 27223 || | | | || | ||||||| | ||||| || | ||| |||| || || || Sbjct 213 AGCCTTGACGTTATCAATGGTGTCTGAGCTCTCAACCTCCAAAGTAATAGTCTTTCCGGT 154 Query 27224 CAGAGTTTTCACAAAGATTTGCATAGCT 27251 ||||| ||||||||||| |||||| || Sbjct 153 GAGAGTCTTCACAAAGATCTGCATACCT 126 >seq29432 Length=351 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| | | || ||| || | ||| | ||| || ||||| || || |||||||| | Sbjct 112 CCTCCTCTGAGCCTCAACACAAGATGAAGCGTGGATTCTTTCTGGATGTTGTAGTCAGCC 171 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | ||| |||||||||||||||| || ||| | || | ||||| |||||||| || Sbjct 172 AAAGTACGCCCGTCTTCGAGCTGTTTTCCAGCGAAGATCAATCGCTGCTGATCCGGAGGG 231 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | || ||||| || ||||||| || | | || | ||||| | || || || Sbjct 232 ATTCCTTCTTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTGTCAGAGGACTCGACC 291 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || | ||||| || || |||||||| ||||| ||||| Sbjct 292 TCGAGGGTGATGGTCTTGCCGGTTAGGGTTTTCACGAAGATCTGCAT 338 >seq10281 Length=966 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| || || | ||||| ||||| || | |||||| || || || || |||||||| Sbjct 719 TGCCACCACGGAGACGCAAGACCAAGTGAAGCGTAGACTCCTTCTGGATGTTGTAGTCAG 660 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 || | || ||||||||||||| || || || | || | | ||| |||||||| | Sbjct 659 CCAAAGTCCGGCCGTCTTCGAGCTGCTTTCCTGCAAAGATCAATCTCTGCTGATCCGGTG 600 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | || ||||| || ||| ||| ||||| | | || | || || | | || | Sbjct 599 GGATGCCTTCTTTGTCTTGGATTTTGGCTTTCACGTTGTCGATGGTATCAGAGCTCTCCA 540 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 | || | ||| || | || ||||||| ||||| ||||||||||||||| Sbjct 539 CCTCCAAAGTAATCGTCTTCCCCGTCAAGGTTTTAACAAAGATTTGCATA 490 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| || | ||| || ||||| || || ||||||||| || | || |||||||| Sbjct 243 ACCAAGTGGAGCGTGGACTCTTTCTGGATGTTGTAGTCGGCCAAAGTTCGGCCGTCTTCG 184 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 |||||||| |||||| | || || | ||| || |||||||| | || || ||||| | Sbjct 183 AGCTGTTTGCCGGCGAAGATAAGCCTCTGCTGGTCCGGCGGGATGCCTTCCTTATCCTGG 124 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 |||||| ||| | | | || | ||||| | | ||| || || || || || | || Sbjct 123 ATCTTGACTTTAACGTTGTCGATGGTGTCAGAGCTTTCCACCTCGAGGGTGATTGTCTTT 64 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || ||||| || | ||| | ||||| Sbjct 63 CCGGTGAGAGTCTTAATGAAGGTCTGCAT 35 >seq273 Length=4066651 Score = 95.1 bits (104), Expect = 1e-14 Identities = 165/239 (69%), Gaps = 1/239 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| | ||| |||| |||| || | || || ||||| || || ||||||||| | Sbjct 887189 CCTCCCCTCAAGCGCAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCGGAC 887248 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | |||| ||||||| | |||||| ||||| | || | | ||| || || || || Sbjct 887249 AGGGTGCGTCCGTCTTCCAACTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGG 887308 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | |||||||| || ||||||| || | | || | ||||| ||| || || Sbjct 887309 ATGCCCTCTTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACC 887368 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAG-CTGCTAAAA 27258 || || || || | || || |||| || ||||||||||| ||||| | ||| ||||| Sbjct 887369 TCCAGGGTGATGGTCTTACCGGTCAAGGTCTTCACAAAGATCTGCATTGTCTGGTAAAA 887427 >seq21504 Length=484 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| || | || || || || || || ||||||||| || |||| | || || Sbjct 451 ACCAAGTGAAGGGTCGATTCCTTCTGGATGTTGTAGTCGGCCAAAGTGCGACCATCCTCA 392 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 ||||| || || ||| | ||||||||||| || ||||| || | ||||| || || Sbjct 391 AGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGTGGGATGCCCTCCTTGTCCTGA 332 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 || ||| ||||| | | || | ||||| | | || ||||| || || |||| ||| Sbjct 331 ATTTTGGCTTTCACGTTATCAATGGTGTCAGAGCTCTCCACTTCGAGGGTGATAGTCTTG 272 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || || || ||||||||||| Sbjct 271 CCTGTAAGGGTCTTGACGAAGATTTGCAT 243 >seq19201 Length=536 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| | || || | ||||| || | ||| || || || || || ||||| || | | Sbjct 279 CCTCCTCTCAGACGGAGAACCAAGTGAAGCGTCGACTCCTTCTGGATGTTGTAATC-CGC 337 Query 27081 ATGTTGCGCTC-GTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 || | || |||||| ||||| || || ||| | || || ||||| |||||||| || Sbjct 338 GAGTGTCCTTCCGTCTTCCAGCTGCTTCCCCGCGAATATCAGCCGCTGCTGATCCGGTGG 397 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | || || || || |||||| |||| | || | ||||| | | |||||| Sbjct 398 GATTCCTTCCTTGTCCTGGATCTTCGCCTTCACATTGTCGATCGTGTCGGACGATTCAAC 457 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 ||||| ||||| | || ||||| || |||||||||||||| ||||| Sbjct 458 CTCTAGGGTTATCGTCTTCCCCGTTAGGGTTTTCACAAAGATCTGCAT 505 >seq683 Length=758919 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| || | || || ||||| || || || ||||| | |||| | || || Sbjct 117143 ACCAAGTGCAGAGTGGACTCTTTCTGGATGTTATAGTCTGAGAGAGTGCGGCCATCCTCC 117202 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 |||||||| || || |||| ||| |||| || || || || | ||||| || || | Sbjct 117203 AGCTGTTTGCCCGCAAAAATCAGATGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCTTGG 117262 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 || ||| ||| | |||| | |||||| ||| | || || || || || | ||| Sbjct 117263 ATTTTGGCTTTGACATTTTCAATAGTGTCACTGGGCTTGACCTCGAGTGTGATGGTCTTG 117322 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 |||||||| |||||||||||||| ||||| Sbjct 117323 CCCGTCAGGGTTTTCACAAAGATCTGCAT 117351 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424605856524168