Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04]
63,439 sequences; 2,073,344,508 total letters
Query= NC_028091.1
Length=196300
Score E
Sequences producing significant alignments: (Bits) Value
seq17663 86.0 8e-12
seq8305 86.0 8e-12
seq8090 86.0 8e-12
seq93 82.4 1e-10
>seq17663
Length=579
Score = 86.0 bits (94), Expect = 8e-12
Identities = 104/142 (73%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 122659 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCT 122718
||||| || ||| || |||||||||| ||| ||||| || |||||||| | |||
Sbjct 220 GCAAAGTCACAGTGAAGCCCCTCATCTCTGGATATAAGCTCGTTTGAGAAAGTCAAACCC 279
Query 122719 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 122778
||||| ||||| | |||||| | ||| | || || || || || |||||||||||
Sbjct 280 GGCATAAGACCTCTCTTCTTAAGCCAGAAGATGGCACAAAAGCTTCCCGAGAAGAAGATT 339
Query 122779 CCCTCCACACACGCAAACGCAA 122800
|| || || || ||||| ||||
Sbjct 340 CCTTCGACGCATGCAAAAGCAA 361
>seq8305
Length=1166
Score = 86.0 bits (94), Expect = 8e-12
Identities = 95/125 (76%), Gaps = 4/125 (3%)
Strand=Plus/Plus
Query 11539 AAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGG 11598
||||||||||||||| || | | |||||||| || ||||| |||||||||||| |
Sbjct 1029 AAAGCCATCCATCTCCGTTAAAAGCTGATTAATCGTCTGTTCCCTCTCATCATTTCC--A 1086
Query 11599 CATACC--ACCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATA 11656
| | || ||| || | | |||| | || || |||||||||||||| || || ||||||
Sbjct 1087 CCTCCCATACCTGCTCCTCTTTGCCTACCAACAGCATCAATCTCATCTATAAAAACAATA 1146
Query 11657 CATGG 11661
|| ||
Sbjct 1147 CAAGG 1151
>seq8090
Length=1192
Score = 86.0 bits (94), Expect = 8e-12
Identities = 171/252 (68%), Gaps = 6/252 (2%)
Strand=Plus/Minus
Query 11450 CGATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCC 11509
|| |||||||| || || | || | |||| ||||| ||||| | | || || ||
Sbjct 249 CGGTCAAAACGCCCTGGTCTCAGCAAGGCGGAGTCAAGAATATCTGCTCTGTTGGTAGCA 190
Query 11510 GCAATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGTAATTGATTA 11569
|||| || | || ||||| | | ||||| ||||||||||| || || | ||||||
Sbjct 189 GCAACTACGATAACACCAGTGTTACCCTCAAAACCATCCATCTCCGTCAGCAGCTGATTA 130
Query 11570 ATTGTTTGTTCTCTCTCATCATTTGCTGGCATACCA---CCAGCACTGCGTTGCTTGCCC 11626
| || |||||||| |||||||| || |||| || | | | |||| ||||
Sbjct 129 AGCGTCTGTTCTCTTTCATCATTACCT---CCACCAATTCCGGTTCCTCTTTGCCTGCCA 73
Query 11627 ACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAG 11686
|| ||||| || ||||| | || ||||| || || |||||| ||| ||| ||
Sbjct 72 ACAGCATCTATTTCATCCACAAAAACAATGCAAGGAGCATTTTCCTTGGCTTTTTTGAAA 13
Query 11687 AGATCGCGAACC 11698
||||| || |||
Sbjct 12 AGATCACGGACC 1
>seq93
Length=2374459
Score = 82.4 bits (90), Expect = 1e-10
Identities = 99/135 (73%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 111265 CTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCC 111324
|||||| || ||| ||||||| |||||||| || | ||| | || ||||| ||
Sbjct 51171 CTCATCTTTGCTTGTATACTCTACTATTTCTGTGCACAGATTGCTGCATTTGATCGTTCC 51230
Query 111325 CAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCC 111384
|| |||| ||||| || ||| ||| || | ||| |||||||||||||| || || ||
Sbjct 51231 CAGGTTCTGCTGGTTGCTTTTCCGGTTACAGGAATCTTTGTAGAGCATGTATGGGGTACC 51290
Query 111385 CGTCTCCGTCTGTGA 111399
||||| ||||| ||
Sbjct 51291 TGTCTCTGTCTGCGA 51305
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 627533978474400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |