Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04] 63,439 sequences; 2,073,344,508 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq17663 86.0 8e-12 seq8305 86.0 8e-12 seq8090 86.0 8e-12 seq93 82.4 1e-10 >seq17663 Length=579 Score = 86.0 bits (94), Expect = 8e-12 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 122659 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCT 122718 ||||| || ||| || |||||||||| ||| ||||| || |||||||| | ||| Sbjct 220 GCAAAGTCACAGTGAAGCCCCTCATCTCTGGATATAAGCTCGTTTGAGAAAGTCAAACCC 279 Query 122719 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 122778 ||||| ||||| | |||||| | ||| | || || || || || ||||||||||| Sbjct 280 GGCATAAGACCTCTCTTCTTAAGCCAGAAGATGGCACAAAAGCTTCCCGAGAAGAAGATT 339 Query 122779 CCCTCCACACACGCAAACGCAA 122800 || || || || ||||| |||| Sbjct 340 CCTTCGACGCATGCAAAAGCAA 361 >seq8305 Length=1166 Score = 86.0 bits (94), Expect = 8e-12 Identities = 95/125 (76%), Gaps = 4/125 (3%) Strand=Plus/Plus Query 11539 AAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGG 11598 ||||||||||||||| || | | |||||||| || ||||| |||||||||||| | Sbjct 1029 AAAGCCATCCATCTCCGTTAAAAGCTGATTAATCGTCTGTTCCCTCTCATCATTTCC--A 1086 Query 11599 CATACC--ACCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATA 11656 | | || ||| || | | |||| | || || |||||||||||||| || || |||||| Sbjct 1087 CCTCCCATACCTGCTCCTCTTTGCCTACCAACAGCATCAATCTCATCTATAAAAACAATA 1146 Query 11657 CATGG 11661 || || Sbjct 1147 CAAGG 1151 >seq8090 Length=1192 Score = 86.0 bits (94), Expect = 8e-12 Identities = 171/252 (68%), Gaps = 6/252 (2%) Strand=Plus/Minus Query 11450 CGATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCC 11509 || |||||||| || || | || | |||| ||||| ||||| | | || || || Sbjct 249 CGGTCAAAACGCCCTGGTCTCAGCAAGGCGGAGTCAAGAATATCTGCTCTGTTGGTAGCA 190 Query 11510 GCAATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGTAATTGATTA 11569 |||| || | || ||||| | | ||||| ||||||||||| || || | |||||| Sbjct 189 GCAACTACGATAACACCAGTGTTACCCTCAAAACCATCCATCTCCGTCAGCAGCTGATTA 130 Query 11570 ATTGTTTGTTCTCTCTCATCATTTGCTGGCATACCA---CCAGCACTGCGTTGCTTGCCC 11626 | || |||||||| |||||||| || |||| || | | | |||| |||| Sbjct 129 AGCGTCTGTTCTCTTTCATCATTACCT---CCACCAATTCCGGTTCCTCTTTGCCTGCCA 73 Query 11627 ACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAG 11686 || ||||| || ||||| | || ||||| || || |||||| ||| ||| || Sbjct 72 ACAGCATCTATTTCATCCACAAAAACAATGCAAGGAGCATTTTCCTTGGCTTTTTTGAAA 13 Query 11687 AGATCGCGAACC 11698 ||||| || ||| Sbjct 12 AGATCACGGACC 1 >seq93 Length=2374459 Score = 82.4 bits (90), Expect = 1e-10 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 111265 CTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCC 111324 |||||| || ||| ||||||| |||||||| || | ||| | || ||||| || Sbjct 51171 CTCATCTTTGCTTGTATACTCTACTATTTCTGTGCACAGATTGCTGCATTTGATCGTTCC 51230 Query 111325 CAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCC 111384 || |||| ||||| || ||| ||| || | ||| |||||||||||||| || || || Sbjct 51231 CAGGTTCTGCTGGTTGCTTTTCCGGTTACAGGAATCTTTGTAGAGCATGTATGGGGTACC 51290 Query 111385 CGTCTCCGTCTGTGA 111399 ||||| ||||| || Sbjct 51291 TGTCTCTGTCTGCGA 51305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627533978474400