Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04] 63,439 sequences; 2,073,344,508 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq17663 96.9 4e-15 >seq17663 Length=579 Score = 96.9 bits (106), Expect = 4e-15 Identities = 215/315 (68%), Gaps = 7/315 (2%) Strand=Plus/Plus Query 129884 GAGTTCATACCGATGAGGTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCC 129943 |||||||| || || || | |||||| || || | ||| ||| | ||||||| ||| Sbjct 88 GAGTTCATTCCAATAAGATCACATGGAAGGGCCTTGCAGACAAACTCTGTCTCAATTTCC 147 Query 129944 ACAGCTTCCCGCACGATGGCGTGAATGGTCTCCGT-GCCAGGT-CTATTGC-GCAAAGTC 130000 || || || | || || | || ||||| | || | || ||| ||||| | Sbjct 148 ACTGCCTCATGAACAATCTGATAAACTTTCTCCACAGGGAGCTGCTTCTGCAGCAAACTG 207 Query 130001 TTGAAGAGTTCCACGGCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTC 130060 | ||||| || | |||| || ||| || ||||| || | ||| || || || || Sbjct 208 TACAAGAGA--CAAG-CAAAGTCACAGTGAAGCCCCTCATCTCTGGATATAAGCTCGTTT 264 Query 130061 GAGAAGCACAGACCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAG 130120 ||||| || ||| ||||| ||||| | |||||| | |||||| || |||||||| Sbjct 265 GAGAAAGTCAAACCCGGCATAAGACCTCTCTTCTTAAGCCAGAAGATGGCACAAAAGCTT 324 Query 130121 CCAGAGAAGAAGATCCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGA-GCG 130179 || ||||||||||| || || || || || || |||| || | | ||||||| || Sbjct 325 CCCGAGAAGAAGATTCCTTCGACGCATGCAAAAGCAACCAGCCTCACAGCAAAAGACATA 384 Query 130180 GGACTTTGTATCAAA 130194 |||||||| ||| || Sbjct 385 GGACTTTGAATCCAA 399 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 617944788616840