Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04]
63,439 sequences; 2,073,344,508 total letters
Query= NC_028093.1
Length=182309
Score E
Sequences producing significant alignments: (Bits) Value
seq17663 96.9 4e-15
seq93 95.1 1e-14
>seq17663
Length=579
Score = 96.9 bits (106), Expect = 4e-15
Identities = 130/180 (72%), Gaps = 1/180 (1%)
Strand=Plus/Minus
Query 94777 TTTGATACAAAGTCGCGT-TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGG 94835
|| ||| ||||||| | || ||||||| | | || | || ||||| || || || ||
Sbjct 399 TTGGATTCAAAGTCCTATGTCTTTTGCTGTGAGGCTGGTTGCTTTTGCATGCGTCGAAGG 340
Query 94836 TATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCC 94895
||||||||||| || ||| || || || | ||||| |||||| ||||||| |||||
Sbjct 339 AATCTTCTTCTCGGGAAGCTTTTGTGCCATCTTCTGGCTTAAGAAGAGAGGTCTTATGCC 280
Query 94896 AGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955
||| | ||||| ||||||||||| || | || ||||| || ||| || |||||
Sbjct 279 GGGTTTGACTTTCTCAAACGAGCTTATATCCAGAGATGAGGGGCTTCACTGTGACTTTGC 220
>seq93
Length=2374459
Score = 95.1 bits (104), Expect = 1e-14
Identities = 103/137 (75%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 104904 AGTCTCAAACCGAGACTGGTACACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGA 104963
|||| || || ||||| ||||| ||||||||||| |||||||| ||||||||| || |
Sbjct 51307 AGTCGCAGACAGAGACAGGTACCCCATACATGCTCTACAAAGATTCCTGTAACCGGAAAA 51248
Query 104964 GTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAAT 105023
| || || |||| |||| |||||| | |||||| || |||||||| | || |
Sbjct 51247 GCAACCAGCAGAACCTGGGAACGATCAAATGCAGCAATCTGTGCACAGAAATAGTAGAGT 51188
Query 105024 TTACAGACAAAGATGAG 105040
|||| ||||||||||
Sbjct 51187 ATACAAGCAAAGATGAG 51171
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 582798281476360
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |