Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04]
63,439 sequences; 2,073,344,508 total letters
Query= NC_028491.1
Length=98392
Score E
Sequences producing significant alignments: (Bits) Value
seq25626 107 1e-18
seq19201 105 4e-18
seq55541 100 2e-16
seq683 100 2e-16
seq61295 98.7 6e-16
seq21504 95.1 8e-15
seq10281 93.3 3e-14
seq58060 89.7 3e-13
seq40511 82.4 5e-11
>seq25626
Length=405
Score = 107 bits (118), Expect = 1e-18
Identities = 141/193 (73%), Gaps = 2/193 (1%)
Strand=Plus/Minus
Query 34515 CTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAA 34574
|||||| |||||||| || || | | || || |||||||||| || || ||||| ||
Sbjct 321 CTCCTTCTGAATGTTGTAGTCGGCTAAGGTGCGGCCGTCTTCAAGCTGCTTCCCGGCGAA 262
Query 34575 TATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGA 34634
|| || | ||| |||||||| || | ||||||||||| ||| || | || |||
Sbjct 261 GATCAATCTCTGCTGGTCCGGAGGAATACCCTCCTTGTC-CTGAATCTTAGCCTTGACGT 203
Query 34635 TA-AAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCA 34693
|| ||| |||||| |||||| || |||| || || || || ||||| | || ||||
Sbjct 202 TATCAATGGTGTCTGAGCTCTCAACCTCCAAAGTAATAGTCTTTCCGGTGAGAGTCTTCA 143
Query 34694 CAAAAATCTGCAT 34706
|||| ||||||||
Sbjct 142 CAAAGATCTGCAT 130
>seq19201
Length=536
Score = 105 bits (116), Expect = 4e-18
Identities = 168/236 (71%), Gaps = 4/236 (2%)
Strand=Plus/Plus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
|| ||||| ||||| | ||||| || || || |||||| || ||||| ||||| |
Sbjct 279 CCTCCTCTCAGACGGAGAACCAAGTGAAGCGTCGACTCCTTCTGGATGTTGTAATCCGCG 338
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
||||| | ||||||| || || || || || ||||| | ||||| || ||||| ||
Sbjct 339 AGTGTCCTTCCGTCTTCCAGCTGCTTCCCCGCGAATATCAGCCGCTGCTGATCCGGTGGG 398
Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAA-ATTGTGTCTT-CGCTCTCCA 34657
| ||| |||||||| |||||| | || || | || ||||| || | || |
Sbjct 399 ATTCCTTCCTTGTCCTGGATCTTC-GCCTTCACATTGTCGATCGTGTCGGACGAT-TCAA 456
Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTGATT 34713
| || | ||||||||| || || |||| ||||||||||| |||||||| ||| ||
Sbjct 457 CCTCTAGGGTTATCGTCTTCCCCGTTAGGGTTTTCACAAAGATCTGCATTTTGCTT 512
>seq55541
Length=216
Score = 100 bits (110), Expect = 2e-16
Identities = 87/108 (81%), Gaps = 0/108 (0%)
Strand=Plus/Minus
Query 34515 CTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAA 34574
||||||||| ||||| || || | || ||||| |||| |||||||| || ||||||||
Sbjct 127 CTCCTTTTGTATGTTGTAGTCAGCGAGAGTTCGGCCGTCCTCAAGTTGCTTTCCGGCAAA 68
Query 34575 TATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTT 34622
|| || | |||||||||||| || | ||||||||||||| ||||||
Sbjct 67 GATCAACCTCTGTTGGTCCGGAGGAATTCCCTCCTTGTCTTGGATCTT 20
>seq683
Length=758919
Score = 100 bits (110), Expect = 2e-16
Identities = 155/219 (71%), Gaps = 2/219 (1%)
Strand=Plus/Plus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
|||| | |||||| || |||||| ||| || || |||||||| ||||| || || ||
Sbjct 117134 AGACAAAGCACCAAGTGCAGAGTGGACTCTTTCTGGATGTTATAGTCTGAGAGAGTGCGG 117193
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
| || || || ||||| || ||||| || | | |||| ||||| || || | ||||||
Sbjct 117194 CCATCCTCCAGCTGTTTGCCCGCAAAAATCAGATGCTGCTGGTCAGGTGGGATGCCCTCC 117253
Query 34609 TTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667
|||||| ||| ||| | ||| || | ||| ||||| | || || || | ||
Sbjct 117254 TTGTCTTGGAT-TTTGGCTTTGACATTTTCAATAGTGTCACTGGGCTTGACCTCGAGTGT 117312
Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|| || || || || | ||||||||||| ||||||||
Sbjct 117313 GATGGTCTTGCCCGTCAGGGTTTTCACAAAGATCTGCAT 117351
>seq61295
Length=203
Score = 98.7 bits (108), Expect = 6e-16
Identities = 118/158 (75%), Gaps = 2/158 (1%)
Strand=Plus/Minus
Query 34550 CGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCT 34609
|||||||||| || || ||||| || || || | ||| |||||||| || | |||||||
Sbjct 193 CGTCTTCAAGCTGCTTCCCGGCGAAGATCAACCTCTGCTGGTCCGGAGGAATACCCTCCT 134
Query 34610 TGTCTGTGATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCACTTCCACGGTT 34668
|||| |||| || | || ||| || ||| ||||| ||||||||| |||| ||
Sbjct 133 TGTCCTGGATC-TTGGCCTTGACGTTATCAATGGTGTCGGAGCTCTCCACCTCCAAAGTA 75
Query 34669 ATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|| || || ||||| | || |||||||| ||||||||
Sbjct 74 ATGGTCTTTCCGGTGAGAGTCTTCACAAAGATCTGCAT 37
>seq21504
Length=484
Score = 95.1 bits (104), Expect = 8e-15
Identities = 157/222 (71%), Gaps = 6/222 (3%)
Strand=Plus/Minus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTG--AAAGTGTTC 34546
||||| | ||||| || || || ||||| || ||||| || || | |||||| |
Sbjct 460 AGACGAAGGACCAAGTGAAGGGTCGATTCCTTCTGGATGTTGTAGTCGGCCAAAGTG--C 403
Query 34547 GCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCT 34606
| | || ||||| || || || || || || | |||||| |||||||| || | ||||
Sbjct 402 GACCATCCTCAAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGTGGGATGCCCT 343
Query 34607 CCTTGTCTGTGATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCACTTCCACG 34665
||||||| ||| ||| | ||| ||| || ||| ||||| |||||||||||| | |
Sbjct 342 CCTTGTC-CTGAATTTTGGCTTTCACGTTATCAATGGTGTCAGAGCTCTCCACTTCGAGG 284
Query 34666 GTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707
|| || || || || || | || || || || || ||||||
Sbjct 283 GTGATAGTCTTGCCTGTAAGGGTCTTGACGAAGATTTGCATG 242
>seq10281
Length=966
Score = 93.3 bits (102), Expect = 3e-14
Identities = 154/220 (70%), Gaps = 2/220 (1%)
Strand=Plus/Minus
Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557
||||| ||||| ||| ||| || || ||||| || || | | ||||| |||||||
Sbjct 243 ACCAAGTGGAGCGTGGACTCTTTCTGGATGTTGTAGTCGGCCAAAGTTCGGCCGTCTTCG 184
Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617
|| ||||| ||||| || || | | ||| ||||||||||| | || ||||| || |
Sbjct 183 AGCTGTTTGCCGGCGAAGATAAGCCTCTGCTGGTCCGGCGGGATGCCTTCCTTATCCTGG 124
Query 34618 ATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTT 34676
||| || ||||||| | || ||||| ||| ||||| || | ||| || || ||
Sbjct 123 ATC-TTGACTTTAACGTTGTCGATGGTGTCAGAGCTTTCCACCTCGAGGGTGATTGTCTT 65
Query 34677 ACCGGTTAACGTTTTCACAAAAATCTGCATGTTGATTGTA 34716
||||| | || || | || ||||||| |||| ||||
Sbjct 64 TCCGGTGAGAGTCTTAATGAAGGTCTGCATCTTGACTGTA 25
>seq58060
Length=210
Score = 89.7 bits (98), Expect = 3e-13
Identities = 130/179 (73%), Gaps = 6/179 (3%)
Strand=Plus/Minus
Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTG--AAAGTGTTCGCTCGTCTT 34555
||||| || || || ||| || |||||||| || || | |||||| || |||| |
Sbjct 176 ACCAAGTGAAGGGTCGACTCTTTCTGAATGTTGTAGTCAGCCAAAGTG--CGACCGTCCT 119
Query 34556 CAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTG 34615
|||| || || || || || || | |||||| |||||||| || | || ||||||||
Sbjct 118 CAAGCTGCTTCCCAGCGAAGATGAGACGCTGCTGGTCCGGTGGGATGCCTTCCTTGTCCT 59
Query 34616 TGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGT 34673
|||||| | |||||| || ||| ||||| |||||||||||||| ||| || ||
Sbjct 58 GGATCTTA-GCCTTAACGTTATCAATGGTGTCGGAGCTCTCCACTTCCAAGGTGATAGT 1
>seq40511
Length=266
Score = 82.4 bits (90), Expect = 5e-11
Identities = 121/169 (72%), Gaps = 2/169 (1%)
Strand=Plus/Minus
Query 34515 CTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAA 34574
|||||| || ||||| || || | || ||||| |||| || ||||| || ||||| ||
Sbjct 177 CTCCTTCTGGATGTTGTAGTCAGCGAGAGTTCGGCCGTCCTCGAGTTGCTTTCCGGCGAA 118
Query 34575 TATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGA 34634
|| | | ||| |||||||| || | ||||||||||||| ||| ||| | || |||
Sbjct 117 AATCAGCCTCTGCTGGTCCGGTGGGATTCCCTCCTTGTCTTGGAT-TTTGGCCTTGACGT 59
Query 34635 T-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGT 34682
| || ||||| ||| ||||| || | || ||||| || |||||
Sbjct 58 TGTCTATCGTGTCAGAGCTTTCCACCTCGAGTGTGATCGTCTTTCCGGT 10
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 314486262777287
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |