Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04] 63,439 sequences; 2,073,344,508 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq25626 107 1e-18 seq19201 105 4e-18 seq55541 100 2e-16 seq683 100 2e-16 seq61295 98.7 6e-16 seq21504 95.1 8e-15 seq10281 93.3 3e-14 seq58060 89.7 3e-13 seq40511 82.4 5e-11 >seq25626 Length=405 Score = 107 bits (118), Expect = 1e-18 Identities = 141/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 34515 CTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAA 34574 |||||| |||||||| || || | | || || |||||||||| || || ||||| || Sbjct 321 CTCCTTCTGAATGTTGTAGTCGGCTAAGGTGCGGCCGTCTTCAAGCTGCTTCCCGGCGAA 262 Query 34575 TATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGA 34634 || || | ||| |||||||| || | ||||||||||| ||| || | || ||| Sbjct 261 GATCAATCTCTGCTGGTCCGGAGGAATACCCTCCTTGTC-CTGAATCTTAGCCTTGACGT 203 Query 34635 TA-AAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCA 34693 || ||| |||||| |||||| || |||| || || || || ||||| | || |||| Sbjct 202 TATCAATGGTGTCTGAGCTCTCAACCTCCAAAGTAATAGTCTTTCCGGTGAGAGTCTTCA 143 Query 34694 CAAAAATCTGCAT 34706 |||| |||||||| Sbjct 142 CAAAGATCTGCAT 130 >seq19201 Length=536 Score = 105 bits (116), Expect = 4e-18 Identities = 168/236 (71%), Gaps = 4/236 (2%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| ||||| | ||||| || || || |||||| || ||||| ||||| | Sbjct 279 CCTCCTCTCAGACGGAGAACCAAGTGAAGCGTCGACTCCTTCTGGATGTTGTAATCCGCG 338 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 ||||| | ||||||| || || || || || ||||| | ||||| || ||||| || Sbjct 339 AGTGTCCTTCCGTCTTCCAGCTGCTTCCCCGCGAATATCAGCCGCTGCTGATCCGGTGGG 398 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAA-ATTGTGTCTT-CGCTCTCCA 34657 | ||| |||||||| |||||| | || || | || ||||| || | || | Sbjct 399 ATTCCTTCCTTGTCCTGGATCTTC-GCCTTCACATTGTCGATCGTGTCGGACGAT-TCAA 456 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTGATT 34713 | || | ||||||||| || || |||| ||||||||||| |||||||| ||| || Sbjct 457 CCTCTAGGGTTATCGTCTTCCCCGTTAGGGTTTTCACAAAGATCTGCATTTTGCTT 512 >seq55541 Length=216 Score = 100 bits (110), Expect = 2e-16 Identities = 87/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 34515 CTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAA 34574 ||||||||| ||||| || || | || ||||| |||| |||||||| || |||||||| Sbjct 127 CTCCTTTTGTATGTTGTAGTCAGCGAGAGTTCGGCCGTCCTCAAGTTGCTTTCCGGCAAA 68 Query 34575 TATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTT 34622 || || | |||||||||||| || | ||||||||||||| |||||| Sbjct 67 GATCAACCTCTGTTGGTCCGGAGGAATTCCCTCCTTGTCTTGGATCTT 20 >seq683 Length=758919 Score = 100 bits (110), Expect = 2e-16 Identities = 155/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 |||| | |||||| || |||||| ||| || || |||||||| ||||| || || || Sbjct 117134 AGACAAAGCACCAAGTGCAGAGTGGACTCTTTCTGGATGTTATAGTCTGAGAGAGTGCGG 117193 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || || ||||| || ||||| || | | |||| ||||| || || | |||||| Sbjct 117194 CCATCCTCCAGCTGTTTGCCCGCAAAAATCAGATGCTGCTGGTCAGGTGGGATGCCCTCC 117253 Query 34609 TTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 |||||| ||| ||| | ||| || | ||| ||||| | || || || | || Sbjct 117254 TTGTCTTGGAT-TTTGGCTTTGACATTTTCAATAGTGTCACTGGGCTTGACCTCGAGTGT 117312 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || || || | ||||||||||| |||||||| Sbjct 117313 GATGGTCTTGCCCGTCAGGGTTTTCACAAAGATCTGCAT 117351 >seq61295 Length=203 Score = 98.7 bits (108), Expect = 6e-16 Identities = 118/158 (75%), Gaps = 2/158 (1%) Strand=Plus/Minus Query 34550 CGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCT 34609 |||||||||| || || ||||| || || || | ||| |||||||| || | ||||||| Sbjct 193 CGTCTTCAAGCTGCTTCCCGGCGAAGATCAACCTCTGCTGGTCCGGAGGAATACCCTCCT 134 Query 34610 TGTCTGTGATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCACTTCCACGGTT 34668 |||| |||| || | || ||| || ||| ||||| ||||||||| |||| || Sbjct 133 TGTCCTGGATC-TTGGCCTTGACGTTATCAATGGTGTCGGAGCTCTCCACCTCCAAAGTA 75 Query 34669 ATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || ||||| | || |||||||| |||||||| Sbjct 74 ATGGTCTTTCCGGTGAGAGTCTTCACAAAGATCTGCAT 37 >seq21504 Length=484 Score = 95.1 bits (104), Expect = 8e-15 Identities = 157/222 (71%), Gaps = 6/222 (3%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTG--AAAGTGTTC 34546 ||||| | ||||| || || || ||||| || ||||| || || | |||||| | Sbjct 460 AGACGAAGGACCAAGTGAAGGGTCGATTCCTTCTGGATGTTGTAGTCGGCCAAAGTG--C 403 Query 34547 GCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCT 34606 | | || ||||| || || || || || || | |||||| |||||||| || | |||| Sbjct 402 GACCATCCTCAAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGTGGGATGCCCT 343 Query 34607 CCTTGTCTGTGATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCACTTCCACG 34665 ||||||| ||| ||| | ||| ||| || ||| ||||| |||||||||||| | | Sbjct 342 CCTTGTC-CTGAATTTTGGCTTTCACGTTATCAATGGTGTCAGAGCTCTCCACTTCGAGG 284 Query 34666 GTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || || || || || || | || || || || || |||||| Sbjct 283 GTGATAGTCTTGCCTGTAAGGGTCTTGACGAAGATTTGCATG 242 >seq10281 Length=966 Score = 93.3 bits (102), Expect = 3e-14 Identities = 154/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557 ||||| ||||| ||| ||| || || ||||| || || | | ||||| ||||||| Sbjct 243 ACCAAGTGGAGCGTGGACTCTTTCTGGATGTTGTAGTCGGCCAAAGTTCGGCCGTCTTCG 184 Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617 || ||||| ||||| || || | | ||| ||||||||||| | || ||||| || | Sbjct 183 AGCTGTTTGCCGGCGAAGATAAGCCTCTGCTGGTCCGGCGGGATGCCTTCCTTATCCTGG 124 Query 34618 ATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTT 34676 ||| || ||||||| | || ||||| ||| ||||| || | ||| || || || Sbjct 123 ATC-TTGACTTTAACGTTGTCGATGGTGTCAGAGCTTTCCACCTCGAGGGTGATTGTCTT 65 Query 34677 ACCGGTTAACGTTTTCACAAAAATCTGCATGTTGATTGTA 34716 ||||| | || || | || ||||||| |||| |||| Sbjct 64 TCCGGTGAGAGTCTTAATGAAGGTCTGCATCTTGACTGTA 25 >seq58060 Length=210 Score = 89.7 bits (98), Expect = 3e-13 Identities = 130/179 (73%), Gaps = 6/179 (3%) Strand=Plus/Minus Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTG--AAAGTGTTCGCTCGTCTT 34555 ||||| || || || ||| || |||||||| || || | |||||| || |||| | Sbjct 176 ACCAAGTGAAGGGTCGACTCTTTCTGAATGTTGTAGTCAGCCAAAGTG--CGACCGTCCT 119 Query 34556 CAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTG 34615 |||| || || || || || || | |||||| |||||||| || | || |||||||| Sbjct 118 CAAGCTGCTTCCCAGCGAAGATGAGACGCTGCTGGTCCGGTGGGATGCCTTCCTTGTCCT 59 Query 34616 TGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGT 34673 |||||| | |||||| || ||| ||||| |||||||||||||| ||| || || Sbjct 58 GGATCTTA-GCCTTAACGTTATCAATGGTGTCGGAGCTCTCCACTTCCAAGGTGATAGT 1 >seq40511 Length=266 Score = 82.4 bits (90), Expect = 5e-11 Identities = 121/169 (72%), Gaps = 2/169 (1%) Strand=Plus/Minus Query 34515 CTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAA 34574 |||||| || ||||| || || | || ||||| |||| || ||||| || ||||| || Sbjct 177 CTCCTTCTGGATGTTGTAGTCAGCGAGAGTTCGGCCGTCCTCGAGTTGCTTTCCGGCGAA 118 Query 34575 TATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGA 34634 || | | ||| |||||||| || | ||||||||||||| ||| ||| | || ||| Sbjct 117 AATCAGCCTCTGCTGGTCCGGTGGGATTCCCTCCTTGTCTTGGAT-TTTGGCCTTGACGT 59 Query 34635 T-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGT 34682 | || ||||| ||| ||||| || | || ||||| || ||||| Sbjct 58 TGTCTATCGTGTCAGAGCTTTCCACCTCGAGTGTGATCGTCTTTCCGGT 10 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314486262777287