Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04] 63,439 sequences; 2,073,344,508 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq19201 131 1e-25 seq25626 127 2e-24 seq273 125 6e-24 seq10281 122 8e-23 seq94 100 2e-16 seq48301 96.9 3e-15 seq29432 96.9 3e-15 seq42717 91.5 1e-13 seq40511 91.5 1e-13 seq19370 89.7 4e-13 seq59367 87.8 2e-12 seq17446 87.8 2e-12 seq58060 84.2 2e-11 >seq19201 Length=536 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| ||||| || || || ||| | || || || || || ||| ||||| Sbjct 505 ATGCAGATCTTTGTGAAAACCCTAACGGGGAAGACGATAACCCTAGAGGTTGAATCGTCC 446 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| |||| || | || || || || || ||||| ||||| || ||||| ||||| Sbjct 445 GACACGATCGACAATGTGAAGGCGAAGATCCAGGACAAGGAAGGAATCCCACCGGATCAG 386 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | |||| ||| || || || |||||||| | ||| | | ||||||||| Sbjct 385 CAGCGGCTGATATTCGCGGGGAAGCAGCTGGAAGACGGAAGGACACTCGCGGATTACAAC 326 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || || ||||||||||| | || |||||| | ||| || | || || Sbjct 325 ATCCAGAAGGAGTCGACGCTTCACTTGGTTCTCCGTCTGAGAGGAGG 279 >seq25626 Length=405 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || ||||| ||||| ||| |||||||| | || || || || Sbjct 130 ATGCAGATCTTTGTGAAGACTCTCACCGGAAAGACTATTACTTTGGAGGTTGAGAGCTCA 189 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | ||||| || ||||| ||||| || || || || || || || Sbjct 190 GACACCATTGATAACGTCAAGGCTAAGATTCAGGACAAGGAGGGTATTCCTCCGGACCAG 249 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | || || | |||||| || || | |||||| | ||| | |||| |||||| Sbjct 250 CAGAGATTGATCTTCGCCGGGAAGCAGCTTGAAGACGGCCGCACCTTAGCCGACTACAAC 309 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| ||||||||||| |||||| | ||| | | | || |||||||| Sbjct 310 ATTCAGAAGGAGTCGACTTTACATCTTGTTCTCAGGCTTCGTGGTGGCAT 359 >seq273 Length=4066651 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || ||||||| ||| | || || || || ||||| || Sbjct 887415 ATGCAGATCTTTGTGAAGACCTTGACCGGTAAGACCATCACCCTGGAGGTGGAGCCCAGT 887356 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| ||||| || || ||||||||||| ||||| || || || || Sbjct 887355 GACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCCCCTGACCAG 887296 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | || || | ||||||||||| ||||||||| | ||| | ||||| |||||| Sbjct 887295 CAGAGGTTGATCTTTGCCGGCAAACAGTTGGAAGACGGACGCACCCTGTCCGACTACAAC 887236 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || || || ||||| || | || |||| |||| ||| |||| || Sbjct 887235 ATCCAGAAAGAGTCCACTCTGCACCTGGTCCTGCGCTTGAGGGGAGG 887189 >seq10281 Length=966 Score = 122 bits (134), Expect = 8e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| ||||| |||| || ||| | |||||| | || ||||| || Sbjct 491 ATGCAAATCTTTGTTAAAACCTTGACGGGGAAGACGATTACTTTGGAGGTGGAGAGCTCT 550 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | || ||| ||||| ||||||||||||||||| ||||| ||||| Sbjct 551 GATACCATCGACAACGTGAAAGCCAAAATCCAAGACAAAGAAGGCATCCCACCGGATCAG 610 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | || || | || || || || | |||||| | ||| | | || |||||| Sbjct 611 CAGAGATTGATCTTTGCAGGAAAGCAGCTCGAAGACGGCCGGACTTTGGCTGACTACAAC 670 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||| || | || ||||| |||||| | || |||||||| Sbjct 671 ATCCAGAAGGAGTCTACGCTTCACTTGGTCTTGCGTCTCCGTGGTGGCAT 720 Score = 102 bits (112), Expect = 7e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || || || || ||| | || ||||| || || || || Sbjct 718 CATGCAGATCTTCGTCAAGACCCTTACGGGGAAGACCATCACTCTGGAGGTCGAGAGTTC 777 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 || | || || | ||||| ||||| |||||||||||||| || ||||| || || Sbjct 778 TGATACTATCGACAACGTCAAGGCTAAAATCCAAGACAAAGAAGGTATCCCACCGGACCA 837 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||| | || | ||| || || || | || || || || | | || ||||| Sbjct 838 GCAGCGTCTCATCTTCGCTGGAAAGCAGCTTGAGGATGGTCGCACATTGGCTGACTACAA 897 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || || ||||||||| | || |||||| | ||| | || ||||| || Sbjct 898 CATCCAGAAAGAGTCGACCCTCCACTTGGTTCTTCGTCTACGTGGTGGTAT 948 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||||| || | || ||||| ||||| ||| | || || || || |||||| || Sbjct 35 ATGCAGACCTTCATTAAGACTCTCACCGGAAAGACAATCACCCTCGAGGTGGAAAGCTCT 94 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || ||| || || || || || |||||||| || || || || Sbjct 95 GACACCATCGACAACGTTAAAGTCAAGATCCAGGATAAGGAAGGCATCCCGCCGGACCAG 154 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTT-TCCGATTACAA 27166 ||| | | || | |||||||||||| | |||||| | ||| | || |||| ||||| Sbjct 155 CAGAGGCTTATCTTCGCCGGCAAACAGCTCGAAGAC-GGCCGAACTTTGGCCGACTACAA 213 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGT 27196 ||| || || ||||| || | || ||||| Sbjct 214 CATCCAGAAAGAGTCCACGCTCCACTTGGT 243 >seq94 Length=5588587 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || ||||| |||||| | || || || || || || || Sbjct 3280253 ATGCAGATCTTTGTGAAGACCCTGACAGGCAAGACCATCACACTCGAGGTCGAGCCCAGT 3280312 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | | ||||| |||||| ||| | ||| |||| || ||||| ||||| || || Sbjct 3280313 GACACTACTGAGAATGTCAAAGCTAAAGTCCAACACAAGGAGGGCATCCCACCTGACCAG 3280372 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||| | || | ||||||||||| |||| || | | || | || || || || Sbjct 3280373 CATCGTCTGATTTTTGCCGGCAAACAGATGGAGGATGGCTGCACTCTCTCAGACTAAAAT 3280432 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 | || || ||||| || | || ||||| | | | |||||||||| || Sbjct 3280433 GTCCAGAAAGAGTCCACTCTGCACTTGGTGCTTCTTCTGCGGGGTGGTAT 3280482 >seq48301 Length=236 Score = 96.9 bits (106), Expect = 3e-15 Identities = 154/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 26997 TTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATT 27056 || || || || ||||||| ||| | || |||||||| ||||| ||||| | ||| Sbjct 1 TTCGTTAAGACATTGACCGGGAAGACCATCACTCTTGAGGTGGAGAGCTCCGATACTATT 60 Query 27057 GAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTA 27116 || | |||||| || || || ||||| ||||| || || || || || || ||| | Sbjct 61 GACAACGTCAAAGCTAAGATCCAGGACAAGGAAGGTATTCCCCCGGACCAGCAACGTCTC 120 Query 27117 ATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAG 27176 || | ||| || || || | || || || || | | || |||||||| || ||| Sbjct 121 ATCTTCGCTGGAAAGCAGCTCGAGGATGGTCGCACATTGGCTGACTACAACATCCAGAAG 180 Query 27177 GAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||||||| | || |||||| | ||| | || ||||| || Sbjct 181 GAGTCGACCCTTCACTTGGTTCTTCGTCTTCGTGGTGGTAT 221 >seq29432 Length=351 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || ||||| || ||||||||| | || || || || || || | || Sbjct 338 ATGCAGATCTTCGTGAAAACCCTAACCGGCAAGACCATCACCCTCGAGGTCGAGTCCTCT 279 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | ||||| || || |||||||||||||| || || || ||||| Sbjct 278 GACACCATCGACAATGTCAAGGCCAAGATCCAAGACAAAGAAGGAATCCCTCCGGATCAG 219 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| || || | ||| || ||||| | |||||| | || | | || |||||| Sbjct 218 CAGCGATTGATCTTCGCTGGAAAACAGCTCGAAGACGGGCGTACTTTGGCTGACTACAAC 159 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTG 27200 || || || || || || | ||| | || ||| Sbjct 158 ATCCAGAAAGAATCCACGCTTCATCTTGTGTTG 126 >seq42717 Length=256 Score = 91.5 bits (100), Expect = 1e-13 Identities = 112/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 27045 TCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGAT 27104 |||||| | || || | || ||| || || || ||||| |||||||| || || ||| Sbjct 10 TCCGACACCATCGACAATGTTAAAGCCAAGATCCAGGACAAGGAAGGCATCCCTCCGGAT 69 Query 27105 CAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTAC 27164 || ||| | | || | |||||| |||||| | ||||| | ||| | | || ||| Sbjct 70 CAGCAGAGGCTTATCTTCGCCGGAAAACAACTTGAAGATGGCCGGACTTTGGCTGACTAC 129 Query 27165 AACATTCAAAAGGAGTCGACCTTACATTTGGTT 27197 |||||||||||||||||||| |||||| | ||| Sbjct 130 AACATTCAAAAGGAGTCGACTTTACATCTTGTT 162 >seq40511 Length=266 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 27003 AAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATG 27062 || ||||| ||||| ||| | || || || || |||||| || ||| |||| || | Sbjct 1 AAGACTCTCACCGGAAAGACGATCACACTCGAGGTGGAAAGCTCTGACACGATAGACAAC 60 Query 27063 GTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATAC 27122 ||||| ||||| |||||||| || || || ||||| || || ||| | | || | | Sbjct 61 GTCAAGGCCAAAATCCAAGACAAGGAGGGAATCCCACCGGACCAGCAGAGGCTGATTTTC 120 Query 27123 GCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCG 27182 ||||| || ||| | || ||| | || | | || |||||||| || ||||||||| Sbjct 121 GCCGGAAAGCAACTCGAGGACGGCCGAACTCTCGCTGACTACAACATCCAGAAGGAGTCG 180 Query 27183 ACCTTACATTTGGTT 27197 ||| | ||| | ||| Sbjct 181 ACCCTTCATCTCGTT 195 >seq19370 Length=533 Score = 89.7 bits (98), Expect = 4e-13 Identities = 129/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 27003 AAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATG 27062 ||||| || ||||||||| | || ||||| || || || |||| | || || | Sbjct 1 AAAACCCTAACCGGCAAGACCATCACTCTCGAGGTCGAGAGCAGCGACACCATCGACAAT 60 Query 27063 GTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATAC 27122 ||||| |||||||||||||| |||||||| || || ||||| ||| | || || | | Sbjct 61 GTCAAGGCCAAAATTCAAGACAAGGAAGGCATCCCTCCGGATCAGCAGAGGTTGATCTTC 120 Query 27123 GCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCG 27182 ||||| ||||| | || || | ||| | |||| ||||| |||||||| || || Sbjct 121 GCCGGAAAACAGCTCGAGGATGGCCGTACCTTGGCCGACTACAATATTCAAAAAGAATCT 180 Query 27183 AC 27184 || Sbjct 181 AC 182 >seq59367 Length=207 Score = 87.8 bits (96), Expect = 2e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 27072 AAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAA 27131 || || || || || ||||| || ||||| ||||| ||| | | || | |||||| ||| Sbjct 16 AAGATCCAGGATAAGGAAGGTATCCCACCGGATCAGCAGAGGCTCATCTTCGCCGGAAAA 75 Query 27132 CAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACAT 27191 ||| | |||||| | || | |||| |||||||| |||||||||||||| |||||| Sbjct 76 CAACTTGAAGACGGCAGAACTTTGGCCGACTACAACATCCAAAAGGAGTCGACTTTACAT 135 Query 27192 TTGGTTTTGCGTTTGCGGGGTGGCAT 27217 | ||| | | | || |||||||| Sbjct 136 CTCGTTCTCAGGCTTCGTGGTGGCAT 161 >seq17446 Length=585 Score = 87.8 bits (96), Expect = 2e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 27072 AAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAA 27131 ||||| || ||||||||||| |||||||| ||||||||| | | |||| ||||| || Sbjct 6 AAAATCCAGGACAAAGAAGGTATACCACCAGATCAACAGAGGCTGATATTTGCCGGAAAG 65 Query 27132 CAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGAC 27184 ||| ||||||| | ||| | | |||||||||||||| || ||||| || Sbjct 66 CAACTGGAAGATGGCCGAACCCTAGCGGATTACAACATTCAGAAAGAGTCTAC 118 >seq58060 Length=210 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 27022 CTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAG 27081 |||| || | |||||||| |||||| | ||||| | || || || || || | Sbjct 2 CTATCACCTTGGAAGTGGAGAGCTCCGACACCATTGATAACGTTAAGGCTAAGATCCAGG 61 Query 27082 ACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAG 27141 |||| |||||||| ||||| || || |||||| | || | ||| || || || | || | Sbjct 62 ACAAGGAAGGCATCCCACCGGACCAGCAGCGTCTCATCTTCGCTGGGAAGCAGCTTGAGG 121 Query 27142 ACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGC 27201 || || || | | || ||||||||||| || ||||||||| | || |||||| | Sbjct 122 ACGGTCGCACTTTGGCTGACTACAACATTCAGAAAGAGTCGACCCTTCACTTGGTTCTCA 181 Query 27202 GTTTGCGGGGTGGC 27215 | | || |||||| Sbjct 182 GGCTCCGTGGTGGC 195 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434573515145280