Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04]
63,439 sequences; 2,073,344,508 total letters
Query= NC_028636.1
Length=135952
Score E
Sequences producing significant alignments: (Bits) Value
seq19201 131 1e-25
seq25626 127 2e-24
seq273 125 6e-24
seq10281 122 8e-23
seq94 100 2e-16
seq48301 96.9 3e-15
seq29432 96.9 3e-15
seq42717 91.5 1e-13
seq40511 91.5 1e-13
seq19370 89.7 4e-13
seq59367 87.8 2e-12
seq17446 87.8 2e-12
seq58060 84.2 2e-11
>seq19201
Length=536
Score = 131 bits (144), Expect = 1e-25
Identities = 165/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| ||||| ||||| || || || ||| | || || || || || ||| |||||
Sbjct 505 ATGCAGATCTTTGTGAAAACCCTAACGGGGAAGACGATAACCCTAGAGGTTGAATCGTCC 446
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| |||| || | || || || || || ||||| ||||| || ||||| |||||
Sbjct 445 GACACGATCGACAATGTGAAGGCGAAGATCCAGGACAAGGAAGGAATCCCACCGGATCAG 386
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
||||| | |||| ||| || || || |||||||| | ||| | | |||||||||
Sbjct 385 CAGCGGCTGATATTCGCGGGGAAGCAGCTGGAAGACGGAAGGACACTCGCGGATTACAAC 326
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214
|| || ||||||||||| | || |||||| | ||| || | || ||
Sbjct 325 ATCCAGAAGGAGTCGACGCTTCACTTGGTTCTCCGTCTGAGAGGAGG 279
>seq25626
Length=405
Score = 127 bits (140), Expect = 2e-24
Identities = 166/230 (72%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| ||||| || ||||| ||||| ||| |||||||| | || || || ||
Sbjct 130 ATGCAGATCTTTGTGAAGACTCTCACCGGAAAGACTATTACTTTGGAGGTTGAGAGCTCA 189
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| | ||||| | ||||| || ||||| ||||| || || || || || || ||
Sbjct 190 GACACCATTGATAACGTCAAGGCTAAGATTCAGGACAAGGAGGGTATTCCTCCGGACCAG 249
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
||| | || || | |||||| || || | |||||| | ||| | |||| ||||||
Sbjct 250 CAGAGATTGATCTTCGCCGGGAAGCAGCTTGAAGACGGCCGCACCTTAGCCGACTACAAC 309
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
||||| ||||||||||| |||||| | ||| | | | || ||||||||
Sbjct 310 ATTCAGAAGGAGTCGACTTTACATCTTGTTCTCAGGCTTCGTGGTGGCAT 359
>seq273
Length=4066651
Score = 125 bits (138), Expect = 6e-24
Identities = 164/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| ||||| || || ||||||| ||| | || || || || ||||| ||
Sbjct 887415 ATGCAGATCTTTGTGAAGACCTTGACCGGTAAGACCATCACCCTGGAGGTGGAGCCCAGT 887356
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| | || |||| ||||| || || ||||||||||| ||||| || || || ||
Sbjct 887355 GACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCCCCTGACCAG 887296
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
||| | || || | ||||||||||| ||||||||| | ||| | ||||| ||||||
Sbjct 887295 CAGAGGTTGATCTTTGCCGGCAAACAGTTGGAAGACGGACGCACCCTGTCCGACTACAAC 887236
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214
|| || || ||||| || | || |||| |||| ||| |||| ||
Sbjct 887235 ATCCAGAAAGAGTCCACTCTGCACCTGGTCCTGCGCTTGAGGGGAGG 887189
>seq10281
Length=966
Score = 122 bits (134), Expect = 8e-23
Identities = 165/230 (72%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
||||| || ||||| ||||| |||| || ||| | |||||| | || ||||| ||
Sbjct 491 ATGCAAATCTTTGTTAAAACCTTGACGGGGAAGACGATTACTTTGGAGGTGGAGAGCTCT 550
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
|| | || || | || ||| ||||| ||||||||||||||||| ||||| |||||
Sbjct 551 GATACCATCGACAACGTGAAAGCCAAAATCCAAGACAAAGAAGGCATCCCACCGGATCAG 610
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
||| | || || | || || || || | |||||| | ||| | | || ||||||
Sbjct 611 CAGAGATTGATCTTTGCAGGAAAGCAGCTCGAAGACGGCCGGACTTTGGCTGACTACAAC 670
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
|| || |||||||| || | || ||||| |||||| | || ||||||||
Sbjct 671 ATCCAGAAGGAGTCTACGCTTCACTTGGTCTTGCGTCTCCGTGGTGGCAT 720
Score = 102 bits (112), Expect = 7e-17
Identities = 161/231 (70%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046
||||||||| || || || || || || || ||| | || ||||| || || || ||
Sbjct 718 CATGCAGATCTTCGTCAAGACCCTTACGGGGAAGACCATCACTCTGGAGGTCGAGAGTTC 777
Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106
|| | || || | ||||| ||||| |||||||||||||| || ||||| || ||
Sbjct 778 TGATACTATCGACAACGTCAAGGCTAAAATCCAAGACAAAGAAGGTATCCCACCGGACCA 837
Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166
|||||| | || | ||| || || || | || || || || | | || |||||
Sbjct 838 GCAGCGTCTCATCTTCGCTGGAAAGCAGCTTGAGGATGGTCGCACATTGGCTGACTACAA 897
Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
||| || || ||||||||| | || |||||| | ||| | || ||||| ||
Sbjct 898 CATCCAGAAAGAGTCGACCCTCCACTTGGTTCTTCGTCTACGTGGTGGTAT 948
Score = 87.8 bits (96), Expect = 2e-12
Identities = 147/210 (70%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
||||||| || | || ||||| ||||| ||| | || || || || |||||| ||
Sbjct 35 ATGCAGACCTTCATTAAGACTCTCACCGGAAAGACAATCACCCTCGAGGTGGAAAGCTCT 94
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| | || || | || ||| || || || || || |||||||| || || || ||
Sbjct 95 GACACCATCGACAACGTTAAAGTCAAGATCCAGGATAAGGAAGGCATCCCGCCGGACCAG 154
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTT-TCCGATTACAA 27166
||| | | || | |||||||||||| | |||||| | ||| | || |||| |||||
Sbjct 155 CAGAGGCTTATCTTCGCCGGCAAACAGCTCGAAGAC-GGCCGAACTTTGGCCGACTACAA 213
Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGT 27196
||| || || ||||| || | || |||||
Sbjct 214 CATCCAGAAAGAGTCCACGCTCCACTTGGT 243
>seq94
Length=5588587
Score = 100 bits (110), Expect = 2e-16
Identities = 160/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| ||||| || || ||||| |||||| | || || || || || || ||
Sbjct 3280253 ATGCAGATCTTTGTGAAGACCCTGACAGGCAAGACCATCACACTCGAGGTCGAGCCCAGT 3280312
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| | | ||||| |||||| ||| | ||| |||| || ||||| ||||| || ||
Sbjct 3280313 GACACTACTGAGAATGTCAAAGCTAAAGTCCAACACAAGGAGGGCATCCCACCTGACCAG 3280372
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
|| ||| | || | ||||||||||| |||| || | | || | || || || ||
Sbjct 3280373 CATCGTCTGATTTTTGCCGGCAAACAGATGGAGGATGGCTGCACTCTCTCAGACTAAAAT 3280432
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
| || || ||||| || | || ||||| | | | |||||||||| ||
Sbjct 3280433 GTCCAGAAAGAGTCCACTCTGCACTTGGTGCTTCTTCTGCGGGGTGGTAT 3280482
>seq48301
Length=236
Score = 96.9 bits (106), Expect = 3e-15
Identities = 154/221 (70%), Gaps = 0/221 (0%)
Strand=Plus/Plus
Query 26997 TTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATT 27056
|| || || || ||||||| ||| | || |||||||| ||||| ||||| | |||
Sbjct 1 TTCGTTAAGACATTGACCGGGAAGACCATCACTCTTGAGGTGGAGAGCTCCGATACTATT 60
Query 27057 GAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTA 27116
|| | |||||| || || || ||||| ||||| || || || || || || ||| |
Sbjct 61 GACAACGTCAAAGCTAAGATCCAGGACAAGGAAGGTATTCCCCCGGACCAGCAACGTCTC 120
Query 27117 ATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAG 27176
|| | ||| || || || | || || || || | | || |||||||| || |||
Sbjct 121 ATCTTCGCTGGAAAGCAGCTCGAGGATGGTCGCACATTGGCTGACTACAACATCCAGAAG 180
Query 27177 GAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
||||||||| | || |||||| | ||| | || ||||| ||
Sbjct 181 GAGTCGACCCTTCACTTGGTTCTTCGTCTTCGTGGTGGTAT 221
>seq29432
Length=351
Score = 96.9 bits (106), Expect = 3e-15
Identities = 149/213 (70%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| || || ||||| || ||||||||| | || || || || || || | ||
Sbjct 338 ATGCAGATCTTCGTGAAAACCCTAACCGGCAAGACCATCACCCTCGAGGTCGAGTCCTCT 279
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| | || || | ||||| || || |||||||||||||| || || || |||||
Sbjct 278 GACACCATCGACAATGTCAAGGCCAAGATCCAAGACAAAGAAGGAATCCCTCCGGATCAG 219
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
||||| || || | ||| || ||||| | |||||| | || | | || ||||||
Sbjct 218 CAGCGATTGATCTTCGCTGGAAAACAGCTCGAAGACGGGCGTACTTTGGCTGACTACAAC 159
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTG 27200
|| || || || || || | ||| | || |||
Sbjct 158 ATCCAGAAAGAATCCACGCTTCATCTTGTGTTG 126
>seq42717
Length=256
Score = 91.5 bits (100), Expect = 1e-13
Identities = 112/153 (73%), Gaps = 0/153 (0%)
Strand=Plus/Plus
Query 27045 TCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGAT 27104
|||||| | || || | || ||| || || || ||||| |||||||| || || |||
Sbjct 10 TCCGACACCATCGACAATGTTAAAGCCAAGATCCAGGACAAGGAAGGCATCCCTCCGGAT 69
Query 27105 CAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTAC 27164
|| ||| | | || | |||||| |||||| | ||||| | ||| | | || |||
Sbjct 70 CAGCAGAGGCTTATCTTCGCCGGAAAACAACTTGAAGATGGCCGGACTTTGGCTGACTAC 129
Query 27165 AACATTCAAAAGGAGTCGACCTTACATTTGGTT 27197
|||||||||||||||||||| |||||| | |||
Sbjct 130 AACATTCAAAAGGAGTCGACTTTACATCTTGTT 162
>seq40511
Length=266
Score = 91.5 bits (100), Expect = 1e-13
Identities = 137/195 (70%), Gaps = 0/195 (0%)
Strand=Plus/Plus
Query 27003 AAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATG 27062
|| ||||| ||||| ||| | || || || || |||||| || ||| |||| || |
Sbjct 1 AAGACTCTCACCGGAAAGACGATCACACTCGAGGTGGAAAGCTCTGACACGATAGACAAC 60
Query 27063 GTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATAC 27122
||||| ||||| |||||||| || || || ||||| || || ||| | | || | |
Sbjct 61 GTCAAGGCCAAAATCCAAGACAAGGAGGGAATCCCACCGGACCAGCAGAGGCTGATTTTC 120
Query 27123 GCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCG 27182
||||| || ||| | || ||| | || | | || |||||||| || |||||||||
Sbjct 121 GCCGGAAAGCAACTCGAGGACGGCCGAACTCTCGCTGACTACAACATCCAGAAGGAGTCG 180
Query 27183 ACCTTACATTTGGTT 27197
||| | ||| | |||
Sbjct 181 ACCCTTCATCTCGTT 195
>seq19370
Length=533
Score = 89.7 bits (98), Expect = 4e-13
Identities = 129/182 (71%), Gaps = 0/182 (0%)
Strand=Plus/Plus
Query 27003 AAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATG 27062
||||| || ||||||||| | || ||||| || || || |||| | || || |
Sbjct 1 AAAACCCTAACCGGCAAGACCATCACTCTCGAGGTCGAGAGCAGCGACACCATCGACAAT 60
Query 27063 GTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATAC 27122
||||| |||||||||||||| |||||||| || || ||||| ||| | || || | |
Sbjct 61 GTCAAGGCCAAAATTCAAGACAAGGAAGGCATCCCTCCGGATCAGCAGAGGTTGATCTTC 120
Query 27123 GCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCG 27182
||||| ||||| | || || | ||| | |||| ||||| |||||||| || ||
Sbjct 121 GCCGGAAAACAGCTCGAGGATGGCCGTACCTTGGCCGACTACAATATTCAAAAAGAATCT 180
Query 27183 AC 27184
||
Sbjct 181 AC 182
>seq59367
Length=207
Score = 87.8 bits (96), Expect = 2e-12
Identities = 107/146 (73%), Gaps = 0/146 (0%)
Strand=Plus/Plus
Query 27072 AAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAA 27131
|| || || || || ||||| || ||||| ||||| ||| | | || | |||||| |||
Sbjct 16 AAGATCCAGGATAAGGAAGGTATCCCACCGGATCAGCAGAGGCTCATCTTCGCCGGAAAA 75
Query 27132 CAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACAT 27191
||| | |||||| | || | |||| |||||||| |||||||||||||| ||||||
Sbjct 76 CAACTTGAAGACGGCAGAACTTTGGCCGACTACAACATCCAAAAGGAGTCGACTTTACAT 135
Query 27192 TTGGTTTTGCGTTTGCGGGGTGGCAT 27217
| ||| | | | || ||||||||
Sbjct 136 CTCGTTCTCAGGCTTCGTGGTGGCAT 161
>seq17446
Length=585
Score = 87.8 bits (96), Expect = 2e-12
Identities = 87/113 (77%), Gaps = 0/113 (0%)
Strand=Plus/Plus
Query 27072 AAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAA 27131
||||| || ||||||||||| |||||||| ||||||||| | | |||| ||||| ||
Sbjct 6 AAAATCCAGGACAAAGAAGGTATACCACCAGATCAACAGAGGCTGATATTTGCCGGAAAG 65
Query 27132 CAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGAC 27184
||| ||||||| | ||| | | |||||||||||||| || ||||| ||
Sbjct 66 CAACTGGAAGATGGCCGAACCCTAGCGGATTACAACATTCAGAAAGAGTCTAC 118
>seq58060
Length=210
Score = 84.2 bits (92), Expect = 2e-11
Identities = 135/194 (70%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 27022 CTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAG 27081
|||| || | |||||||| |||||| | ||||| | || || || || || |
Sbjct 2 CTATCACCTTGGAAGTGGAGAGCTCCGACACCATTGATAACGTTAAGGCTAAGATCCAGG 61
Query 27082 ACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAG 27141
|||| |||||||| ||||| || || |||||| | || | ||| || || || | || |
Sbjct 62 ACAAGGAAGGCATCCCACCGGACCAGCAGCGTCTCATCTTCGCTGGGAAGCAGCTTGAGG 121
Query 27142 ACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGC 27201
|| || || | | || ||||||||||| || ||||||||| | || |||||| |
Sbjct 122 ACGGTCGCACTTTGGCTGACTACAACATTCAGAAAGAGTCGACCCTTCACTTGGTTCTCA 181
Query 27202 GTTTGCGGGGTGGC 27215
| | || ||||||
Sbjct 182 GGCTCCGTGGTGGC 195
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 434573515145280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |