Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04] 63,439 sequences; 2,073,344,508 total letters Query= NC_028767.1 Length=45653 Score E Sequences producing significant alignments: (Bits) Value seq6600 610 2e-170 >seq6600 Length=1418 Score = 610 bits (676), Expect = 2e-170 Identities = 960/1365 (70%), Gaps = 22/1365 (2%) Strand=Plus/Plus Query 18461 GGATCAAGTCCAAATTTGTGTGTAAATTCC--CTCAGCTAGA----CTGTGCTACATAAT 18514 |||||||||||||| ||||||||||| | ||| | |||| ||| |||||| || Sbjct 50 GGATCAAGTCCAAAATTGTGTGTAAAAAGCTCCTCGGTTAGATAAGCTGC-CTACATGAT 108 Query 18515 GCGAGTCACTTTGGCATCGGACTTTGGCCGATCC---TTCCGCCATTCCATGTACTCGGT 18571 ||| ||||| || || | |||| || || ||||| | ||| || Sbjct 109 GCGTGTCACCTTACTATGTGTTTTTGCTGAATGGCTTTTGCGCCAGGTGAAGTAATCTTC 168 Query 18572 CATGTCGAGATATTTCTTGCCGGCTGCCCATTTTTCATCCTGTTCCATCAATAGAGCACC 18631 ||| ||||| |||||| || ||||| || |||||||||||||| | || || || Sbjct 169 CATATCGAGGTATTTCCGACCACTGGCCCACTTCTCATCCTGTTCCATGAGTAAGGCCCC 228 Query 18632 AATAAGACGAATCACGGATTCACGGTTTGGGAAGATGCGAATGACACGTTCCCGGCGTCT 18691 | ||||||||||| |||| ||||| || || |||||||| ||||||||||| | | Sbjct 229 CAACAGACGAATCACCGATTGGCGGTTGGGAAAAATGCGAATCACACGTTCCCGTCTGCG 288 Query 18692 AACCTCTTCGTTGAGACGCTCAACGCTATTTGTCGTGCGCAGCCGTTTTCGGTAACGCTC 18751 | |||||||| | ||||| ||||| || || || ||||| || || ||||| ||| Sbjct 289 GATTTCTTCGTTCAACCGCTCGACGCTGTTGGTGGTACGCAGTCGCTTACGGTACTTCTC 348 Query 18752 TGGCAGCATTAAGACGGCGGTAGCATCGTCAAATCCGCTTTCCAGCACGCCCATCGCCTT 18811 || | || |||||||| ||||| ||||| ||| |||||| | | ||| || || Sbjct 349 AGGGAAAGCCAAAACGGCGGTGGCATCATCAAACCCGTTTTCCAAAATACGCATGGCTTT 408 Query 18812 ACCCGCCTTATCTTCATAAGCCGCTAAG-GTCTGTTTTAATAAAAACCTTGCCGTTCCAG 18870 | ||| || |||||| ||| | | || || | || || | | || || ||| | Sbjct 409 AGGCGCTTTCTCTTCA-AAGACTTTCAGCGTTTCGTTCAAAAGCATTCTGGCTGTTTCGA 467 Query 18871 TATCAGGAGCATCTAGAATCGACCGTAGACGGCCATGGATCTCATCCTTCAAGGCTTTGG 18930 |||| | ||||| || || || | | ||| ||| | || || ||| ||||| | Sbjct 468 TATCCGCTGCATCCAGGATGCCACGGACATGGCGATGAACTTCGTCTCTCAGCGCTTTTG 527 Query 18931 GTGAGGCTTCTAATACATTTCGCGTGAAGTGAGTCTGGCATCGCTGCCATGTTACCCCTT 18990 ||| ||| || | | ||| ||| | || || || || || || ||||| || ||||||| Sbjct 528 GTGTGGCATCCAGAATATTACGCATCAAATGGGTTTGACAGCGTTGCCAGGTGACCCCTT 587 Query 18991 GCAGCTGCTGCCGTACCGCGCGTACAAGGCCGCCATGATCGTCGGAGGTAATGAGATCCA 19050 | | || || || | || || || | |||||||| || || ||||| || | ||| | Sbjct 588 GGAAATGGTGACGAATGGCACGGACTAAACCGCCATGGTCATCAGAGGTGATCAAATCGA 647 Query 19051 CACCTCGTAATCCACGTCCTTTTAGAGAGCTGAAAAACTCACTCCAGCTTGCTTCAGATT 19110 |||| | | |||||| ||||| | |||||||| || |||||||| ||||| |||| Sbjct 648 CACCACCAAGACCACGTTGTTTTAACCAACTGAAAAATTCGCTCCAGCTGGCTTCCGATT 707 Query 19111 CTGTGTCACCCAGCATCAGGCCAAGGACTTCACGATAGCCCTCGGTGTTTACACCAATGG 19170 | |||||||| ||| | || | |||||| || || || || ||||| ||||| || Sbjct 708 CCGTGTCACCGGTCATGATCCCCAAGACTTCCCGGTAACCGTCTGTGTTGACACCGATTC 767 Query 19171 CAATCATGATGCCTCGTGAGCGTACACGACCGTCTTCACGGACCTTGAGATACATCGCAT 19230 | ||||| | |||| || ||||| || || || |||||||| ||||| |||| |||| Sbjct 768 CTATCATCACTCCTCTGGACCGTACCCGGCCATCCTCACGGACTTTGAGGTACAAGGCAT 827 Query 19231 CTACGAGAACAAACGGAAAGAGGCTGTCTGCCAGGCTTCGATTATTCCAAGCAGTTACGA 19290 | || || |||||||| || ||| ||||| || |||| ||||||||| || | Sbjct 828 CCACCAGCACAAACGGGAACCGGCGGTCTGAAAGCGGACGATAATTCCAAGCCTCCACAA 887 Query 19291 TGGGATCCAGCCGCTTACAAAGGTCTGAAACAGTGGATTTAGAAAACTCGGTTCCGCAGA 19350 | ||||| |||| || || ||||||||||| ||||| || ||||| | || ||||| | Sbjct 888 TAGGATCAAGCCTTTTGCACAGGTCTGAAACGGTGGACTTGGAAAAATGAGTGCCGCAAA 947 Query 19351 GTTCTTCGGTTACTTGCGAGACTTTACGCGTAGAGACGCCGTTTACGACCATTTCCATCA 19410 | |||||||| | || | |||||||| || || || || || |||||||||||||||| Sbjct 948 GCTCTTCGGTAATCTGAGTCACTTTACGTGTGGAAACCCCATTCACGACCATTTCCATCA 1007 Query 19411 TCGCTAAGATTAACGCTTGTTCACTTCTCTGGTAACGACTAAAGAGCTCTGTCGTGAACT 19470 || || | || ||||| || || | |||||||| ||| || || || | ||||| Sbjct 1008 AAGCCAACACCAAAGCTTGCTCGCTCCGTTGGTAACGGGCAAACAGTTCAGTGGAGAACT 1067 Query 19471 TCCCGCCACGGATGCGCGGAACACTTAGTGTAATGGTTCCCACCCGCGTATGCAGCCCAT 19530 ||| || || || ||||||| || |||||||| |||||||| || | || Sbjct 1068 GACCGTTTCGAATCCGTGGAACACGTAACGTAATGGTCCCCACCCGAGTGGTTAATTGAT 1127 Query 19531 GTGGATACGATCCATTCCGGTACGCTTTTCGATTCTCTGTTCGTTCATAACGATCTGCTT 19590 | ||||| |||||||| || || ||| || || || |||||||| || || ||| Sbjct 1128 GAGGATAGGATCCATTGCGATAGCCTTGACGGGAATCCGTGCGTTCATAGCGTTCAGCTG 1187 Query 19591 CCACTTGTTCACTCACCTGTGCTTGTAAGACTTGGTTCAGTACAGACTCGAGCAGCTTGG 19650 ||| ||||| ||||||| ||||| | | |||||| | ||| || || || | || | Sbjct 1188 CCAGCTGTTCGGTCACCTGCGCTTGGAGAATTTGGTTTAATACCGATTCCAGTAATTTCG 1247 Query 19651 CTACACCCGCATCCTGAGAATTTCCCAAAAATAGTTGATGCAAAAGCTGCGAATCTACGT 19710 ||||||| || || | |||| ||| ||||| ||||| |||||||| | ||||||| Sbjct 1248 CTACACCAGCGTCTTTTGAATGTCCTAAAAAAAGTTGCTGCAAAAGTTCTTGATCTACGG 1307 Query 19711 TAATCTGGTATTGAGCCATTTCATAA--CACCTCGTATATTTAGAATTTTGTGTCC--CA 19766 ||||||||||||||||||||||| || | |||| | ||||| | | ||| || Sbjct 1308 TAATCTGGTATTGAGCCATTTCAAAATTCTCCTC-----TCCAGAATGGTATTTCCGACA 1362 Query 19767 ACATTATTCTAACTGAGGGCTATGAATATGGCTCCTTTCATTTTT 19811 || |||||||| |||| | |||| |||||||||| |||||| Sbjct 1363 ACTCCATTCTAACCGAGGATTTTGAAATTGGCTCCTTT-ATTTTT 1406 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 145858036740570