Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04]
63,439 sequences; 2,073,344,508 total letters
Query= NC_028767.1
Length=45653
Score E
Sequences producing significant alignments: (Bits) Value
seq6600 610 2e-170
>seq6600
Length=1418
Score = 610 bits (676), Expect = 2e-170
Identities = 960/1365 (70%), Gaps = 22/1365 (2%)
Strand=Plus/Plus
Query 18461 GGATCAAGTCCAAATTTGTGTGTAAATTCC--CTCAGCTAGA----CTGTGCTACATAAT 18514
|||||||||||||| ||||||||||| | ||| | |||| ||| |||||| ||
Sbjct 50 GGATCAAGTCCAAAATTGTGTGTAAAAAGCTCCTCGGTTAGATAAGCTGC-CTACATGAT 108
Query 18515 GCGAGTCACTTTGGCATCGGACTTTGGCCGATCC---TTCCGCCATTCCATGTACTCGGT 18571
||| ||||| || || | |||| || || ||||| | ||| ||
Sbjct 109 GCGTGTCACCTTACTATGTGTTTTTGCTGAATGGCTTTTGCGCCAGGTGAAGTAATCTTC 168
Query 18572 CATGTCGAGATATTTCTTGCCGGCTGCCCATTTTTCATCCTGTTCCATCAATAGAGCACC 18631
||| ||||| |||||| || ||||| || |||||||||||||| | || || ||
Sbjct 169 CATATCGAGGTATTTCCGACCACTGGCCCACTTCTCATCCTGTTCCATGAGTAAGGCCCC 228
Query 18632 AATAAGACGAATCACGGATTCACGGTTTGGGAAGATGCGAATGACACGTTCCCGGCGTCT 18691
| ||||||||||| |||| ||||| || || |||||||| ||||||||||| | |
Sbjct 229 CAACAGACGAATCACCGATTGGCGGTTGGGAAAAATGCGAATCACACGTTCCCGTCTGCG 288
Query 18692 AACCTCTTCGTTGAGACGCTCAACGCTATTTGTCGTGCGCAGCCGTTTTCGGTAACGCTC 18751
| |||||||| | ||||| ||||| || || || ||||| || || ||||| |||
Sbjct 289 GATTTCTTCGTTCAACCGCTCGACGCTGTTGGTGGTACGCAGTCGCTTACGGTACTTCTC 348
Query 18752 TGGCAGCATTAAGACGGCGGTAGCATCGTCAAATCCGCTTTCCAGCACGCCCATCGCCTT 18811
|| | || |||||||| ||||| ||||| ||| |||||| | | ||| || ||
Sbjct 349 AGGGAAAGCCAAAACGGCGGTGGCATCATCAAACCCGTTTTCCAAAATACGCATGGCTTT 408
Query 18812 ACCCGCCTTATCTTCATAAGCCGCTAAG-GTCTGTTTTAATAAAAACCTTGCCGTTCCAG 18870
| ||| || |||||| ||| | | || || | || || | | || || ||| |
Sbjct 409 AGGCGCTTTCTCTTCA-AAGACTTTCAGCGTTTCGTTCAAAAGCATTCTGGCTGTTTCGA 467
Query 18871 TATCAGGAGCATCTAGAATCGACCGTAGACGGCCATGGATCTCATCCTTCAAGGCTTTGG 18930
|||| | ||||| || || || | | ||| ||| | || || ||| ||||| |
Sbjct 468 TATCCGCTGCATCCAGGATGCCACGGACATGGCGATGAACTTCGTCTCTCAGCGCTTTTG 527
Query 18931 GTGAGGCTTCTAATACATTTCGCGTGAAGTGAGTCTGGCATCGCTGCCATGTTACCCCTT 18990
||| ||| || | | ||| ||| | || || || || || || ||||| || |||||||
Sbjct 528 GTGTGGCATCCAGAATATTACGCATCAAATGGGTTTGACAGCGTTGCCAGGTGACCCCTT 587
Query 18991 GCAGCTGCTGCCGTACCGCGCGTACAAGGCCGCCATGATCGTCGGAGGTAATGAGATCCA 19050
| | || || || | || || || | |||||||| || || ||||| || | ||| |
Sbjct 588 GGAAATGGTGACGAATGGCACGGACTAAACCGCCATGGTCATCAGAGGTGATCAAATCGA 647
Query 19051 CACCTCGTAATCCACGTCCTTTTAGAGAGCTGAAAAACTCACTCCAGCTTGCTTCAGATT 19110
|||| | | |||||| ||||| | |||||||| || |||||||| ||||| ||||
Sbjct 648 CACCACCAAGACCACGTTGTTTTAACCAACTGAAAAATTCGCTCCAGCTGGCTTCCGATT 707
Query 19111 CTGTGTCACCCAGCATCAGGCCAAGGACTTCACGATAGCCCTCGGTGTTTACACCAATGG 19170
| |||||||| ||| | || | |||||| || || || || ||||| ||||| ||
Sbjct 708 CCGTGTCACCGGTCATGATCCCCAAGACTTCCCGGTAACCGTCTGTGTTGACACCGATTC 767
Query 19171 CAATCATGATGCCTCGTGAGCGTACACGACCGTCTTCACGGACCTTGAGATACATCGCAT 19230
| ||||| | |||| || ||||| || || || |||||||| ||||| |||| ||||
Sbjct 768 CTATCATCACTCCTCTGGACCGTACCCGGCCATCCTCACGGACTTTGAGGTACAAGGCAT 827
Query 19231 CTACGAGAACAAACGGAAAGAGGCTGTCTGCCAGGCTTCGATTATTCCAAGCAGTTACGA 19290
| || || |||||||| || ||| ||||| || |||| ||||||||| || |
Sbjct 828 CCACCAGCACAAACGGGAACCGGCGGTCTGAAAGCGGACGATAATTCCAAGCCTCCACAA 887
Query 19291 TGGGATCCAGCCGCTTACAAAGGTCTGAAACAGTGGATTTAGAAAACTCGGTTCCGCAGA 19350
| ||||| |||| || || ||||||||||| ||||| || ||||| | || ||||| |
Sbjct 888 TAGGATCAAGCCTTTTGCACAGGTCTGAAACGGTGGACTTGGAAAAATGAGTGCCGCAAA 947
Query 19351 GTTCTTCGGTTACTTGCGAGACTTTACGCGTAGAGACGCCGTTTACGACCATTTCCATCA 19410
| |||||||| | || | |||||||| || || || || || ||||||||||||||||
Sbjct 948 GCTCTTCGGTAATCTGAGTCACTTTACGTGTGGAAACCCCATTCACGACCATTTCCATCA 1007
Query 19411 TCGCTAAGATTAACGCTTGTTCACTTCTCTGGTAACGACTAAAGAGCTCTGTCGTGAACT 19470
|| || | || ||||| || || | |||||||| ||| || || || | |||||
Sbjct 1008 AAGCCAACACCAAAGCTTGCTCGCTCCGTTGGTAACGGGCAAACAGTTCAGTGGAGAACT 1067
Query 19471 TCCCGCCACGGATGCGCGGAACACTTAGTGTAATGGTTCCCACCCGCGTATGCAGCCCAT 19530
||| || || || ||||||| || |||||||| |||||||| || | ||
Sbjct 1068 GACCGTTTCGAATCCGTGGAACACGTAACGTAATGGTCCCCACCCGAGTGGTTAATTGAT 1127
Query 19531 GTGGATACGATCCATTCCGGTACGCTTTTCGATTCTCTGTTCGTTCATAACGATCTGCTT 19590
| ||||| |||||||| || || ||| || || || |||||||| || || |||
Sbjct 1128 GAGGATAGGATCCATTGCGATAGCCTTGACGGGAATCCGTGCGTTCATAGCGTTCAGCTG 1187
Query 19591 CCACTTGTTCACTCACCTGTGCTTGTAAGACTTGGTTCAGTACAGACTCGAGCAGCTTGG 19650
||| ||||| ||||||| ||||| | | |||||| | ||| || || || | || |
Sbjct 1188 CCAGCTGTTCGGTCACCTGCGCTTGGAGAATTTGGTTTAATACCGATTCCAGTAATTTCG 1247
Query 19651 CTACACCCGCATCCTGAGAATTTCCCAAAAATAGTTGATGCAAAAGCTGCGAATCTACGT 19710
||||||| || || | |||| ||| ||||| ||||| |||||||| | |||||||
Sbjct 1248 CTACACCAGCGTCTTTTGAATGTCCTAAAAAAAGTTGCTGCAAAAGTTCTTGATCTACGG 1307
Query 19711 TAATCTGGTATTGAGCCATTTCATAA--CACCTCGTATATTTAGAATTTTGTGTCC--CA 19766
||||||||||||||||||||||| || | |||| | ||||| | | ||| ||
Sbjct 1308 TAATCTGGTATTGAGCCATTTCAAAATTCTCCTC-----TCCAGAATGGTATTTCCGACA 1362
Query 19767 ACATTATTCTAACTGAGGGCTATGAATATGGCTCCTTTCATTTTT 19811
|| |||||||| |||| | |||| |||||||||| ||||||
Sbjct 1363 ACTCCATTCTAACCGAGGATTTTGAAATTGGCTCCTTT-ATTTTT 1406
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 145858036740570
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |