Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04]
63,439 sequences; 2,073,344,508 total letters
Query= NC_029132.1
Length=140122
Score E
Sequences producing significant alignments: (Bits) Value
seq170 156 4e-33
seq7730 84.2 2e-11
>seq170
Length=9568404
Score = 156 bits (172), Expect = 4e-33
Identities = 131/161 (81%), Gaps = 0/161 (0%)
Strand=Plus/Plus
Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAAT 34624
||||| ||||| ||||| || || |||||||| |||| ||||| |||||||| | |||
Sbjct 9398962 GATCTGCCTCTCATGGCTCTACCTCCGTGCCATGCCCTTTGCCAGTTCTACGTGGTGAAC 9399021
Query 34625 GGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTC 34684
|| ||||||||||||||||| ||||| | || | ||||||||| | |||||||| |||
Sbjct 9399022 GGTGAGCTGTCCTGCCAGCTGTATCAGAGGTCAGCAGACATGGGCCTGGGGGTGCCCTTC 9399081
Query 34685 AACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCA 34725
||||| || || ||| | |||||||| ||||||||||| ||
Sbjct 9399082 AACATCGCCAGCTACTCCCTGCTCACCTACATGATCGCGCA 9399122
Score = 156 bits (172), Expect = 4e-33
Identities = 131/161 (81%), Gaps = 0/161 (0%)
Strand=Plus/Minus
Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679
|| ||||||||||| |||||||| | ||| || || |||||||| |||||||| | |||
Sbjct 9399122 TGCGCGATCATGTAGGTGAGCAGGGAGTAGCTGGCGATGTTGAAGGGCACCCCCAGGCCC 9399063
Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGG 6739
|||||| | || | ||||| ||||||||||||||||| || ||| | |||||||| |||
Sbjct 9399062 ATGTCTGCTGACCTCTGATACAGCTGGCAGGACAGCTCACCGTTCACCACGTAGAACTGG 9399003
Query 6740 CAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780
|| |||| |||||||| || || ||||| ||||| |||||
Sbjct 9399002 CAAAGGGCATGGCACGGAGGTAGAGCCATGAGAGGCAGATC 9398962
>seq7730
Length=1237
Score = 84.2 bits (92), Expect = 2e-11
Identities = 226/343 (66%), Gaps = 2/343 (1%)
Strand=Plus/Plus
Query 34388 GAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTAT 34447
|| || || ||| | || || || || || || || |||||||||||||| || ||||
Sbjct 490 GAAGAAGGTGACCTTGGACCCGTTTATGGATTTCAATGGAGACACTTTGGTGCTAAGTAC 549
Query 34448 CGGGGGAGCGAAGCGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGAC 34507
| | | || || ||| | || || ||| || ||||| | | || || ||
Sbjct 550 ACAGATATGCATGCTGATTATACTGGCCAAGGATTTGATCAGCTCTCGGATGTAATTAAC 609
Query 34508 ACCTTGAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGAT 34567
| | ||| || |||||||| || |||| | |||| || ||||| || ||
Sbjct 610 AAGATCAAGAACAATCCTGATGATCGACGGATAATAATGTCGGCTTGGAATCCTTCTGAC 669
Query 34568 CTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGC-CAATTCTACGTCGCGAATGG 34626
|| ||||||| || || || ||||||| | ||| || || || || | |||||
Sbjct 670 CTTAAGTTGATGGCACTTCCTCCATGCCACATGTT-TGCGCAGTTTTATGTTACAAATGG 728
Query 34627 GGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAA 34686
||||| || || || | ||||| || || | || ||||| | || || ||||| ||
Sbjct 729 AGAGCTTTCGTGTCAAATGTATCAGCGCTCAGCCGATATGGGTCTTGGTGTACCGTTTAA 788
Query 34687 CATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCATGTC 34729
|||||| ||| | || || || | ||| |||||||||||
Sbjct 789 CATTGCCTCATACTCCCTTCTTACATGCATCCTCGCTCATGTC 831
Score = 84.2 bits (92), Expect = 2e-11
Identities = 226/343 (66%), Gaps = 2/343 (1%)
Strand=Plus/Minus
Query 6616 GACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAA 6675
||||||||||| ||| | || || || | ||| |||||||| ||||| || || |
Sbjct 831 GACATGAGCGAGGATGCATGTAAGAAGGGAGTATGAGGCAATGTTAAACGGTACACCAAG 772
Query 6676 CCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAA 6735
||||| || | || || ||||| | || || || ||||| ||||| | || || ||
Sbjct 771 ACCCATATCGGCTGAGCGCTGATACATTTGACACGAAAGCTCTCCATTTGTAACATAAAA 712
Query 6736 TTG-GCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACG 6794
|| ||| | ||||||| || || || ||||||| || || || ||||| |
Sbjct 711 CTGCGCA-AACATGTGGCATGGAGGAAGTGCCATCAACTTAAGGTCAGAAGGATTCCAAG 653
Query 6795 CGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCACGTACTGCA 6854
| |||| | |||| || |||||||| || ||| | ||| || || | | |
Sbjct 652 CCGACATTATTATCCGTCGATCATCAGGATTGTTCTTGATCTTGTTAATTACATCCGAGA 593
Query 6855 GCTGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGATACTCCGCCCCAAAGT 6914
|||| || ||| || || | ||| || || | | | |||| || |||||||
Sbjct 592 GCTGATCAAATCCTTGGCCAGTATAATCAGCATGCATATCTGTGTACTTAGCACCAAAGT 533
Query 6915 GTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTC 6957
||||||| || || || || || || || | ||| || || ||
Sbjct 532 GTCTCCATTGAAATCCATAAACGGGTCCAAGGTCACCTTCTTC 490
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 447906933520080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |