Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04] 63,439 sequences; 2,073,344,508 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq170 156 4e-33 seq7730 84.2 2e-11 >seq170 Length=9568404 Score = 156 bits (172), Expect = 4e-33 Identities = 131/161 (81%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAAT 34624 ||||| ||||| ||||| || || |||||||| |||| ||||| |||||||| | ||| Sbjct 9398962 GATCTGCCTCTCATGGCTCTACCTCCGTGCCATGCCCTTTGCCAGTTCTACGTGGTGAAC 9399021 Query 34625 GGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTC 34684 || ||||||||||||||||| ||||| | || | ||||||||| | |||||||| ||| Sbjct 9399022 GGTGAGCTGTCCTGCCAGCTGTATCAGAGGTCAGCAGACATGGGCCTGGGGGTGCCCTTC 9399081 Query 34685 AACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCA 34725 ||||| || || ||| | |||||||| ||||||||||| || Sbjct 9399082 AACATCGCCAGCTACTCCCTGCTCACCTACATGATCGCGCA 9399122 Score = 156 bits (172), Expect = 4e-33 Identities = 131/161 (81%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679 || ||||||||||| |||||||| | ||| || || |||||||| |||||||| | ||| Sbjct 9399122 TGCGCGATCATGTAGGTGAGCAGGGAGTAGCTGGCGATGTTGAAGGGCACCCCCAGGCCC 9399063 Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGG 6739 |||||| | || | ||||| ||||||||||||||||| || ||| | |||||||| ||| Sbjct 9399062 ATGTCTGCTGACCTCTGATACAGCTGGCAGGACAGCTCACCGTTCACCACGTAGAACTGG 9399003 Query 6740 CAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780 || |||| |||||||| || || ||||| ||||| ||||| Sbjct 9399002 CAAAGGGCATGGCACGGAGGTAGAGCCATGAGAGGCAGATC 9398962 >seq7730 Length=1237 Score = 84.2 bits (92), Expect = 2e-11 Identities = 226/343 (66%), Gaps = 2/343 (1%) Strand=Plus/Plus Query 34388 GAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTAT 34447 || || || ||| | || || || || || || || |||||||||||||| || |||| Sbjct 490 GAAGAAGGTGACCTTGGACCCGTTTATGGATTTCAATGGAGACACTTTGGTGCTAAGTAC 549 Query 34448 CGGGGGAGCGAAGCGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGAC 34507 | | | || || ||| | || || ||| || ||||| | | || || || Sbjct 550 ACAGATATGCATGCTGATTATACTGGCCAAGGATTTGATCAGCTCTCGGATGTAATTAAC 609 Query 34508 ACCTTGAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGAT 34567 | | ||| || |||||||| || |||| | |||| || ||||| || || Sbjct 610 AAGATCAAGAACAATCCTGATGATCGACGGATAATAATGTCGGCTTGGAATCCTTCTGAC 669 Query 34568 CTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGC-CAATTCTACGTCGCGAATGG 34626 || ||||||| || || || ||||||| | ||| || || || || | ||||| Sbjct 670 CTTAAGTTGATGGCACTTCCTCCATGCCACATGTT-TGCGCAGTTTTATGTTACAAATGG 728 Query 34627 GGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAA 34686 ||||| || || || | ||||| || || | || ||||| | || || ||||| || Sbjct 729 AGAGCTTTCGTGTCAAATGTATCAGCGCTCAGCCGATATGGGTCTTGGTGTACCGTTTAA 788 Query 34687 CATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCATGTC 34729 |||||| ||| | || || || | ||| ||||||||||| Sbjct 789 CATTGCCTCATACTCCCTTCTTACATGCATCCTCGCTCATGTC 831 Score = 84.2 bits (92), Expect = 2e-11 Identities = 226/343 (66%), Gaps = 2/343 (1%) Strand=Plus/Minus Query 6616 GACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAA 6675 ||||||||||| ||| | || || || | ||| |||||||| ||||| || || | Sbjct 831 GACATGAGCGAGGATGCATGTAAGAAGGGAGTATGAGGCAATGTTAAACGGTACACCAAG 772 Query 6676 CCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAA 6735 ||||| || | || || ||||| | || || || ||||| ||||| | || || || Sbjct 771 ACCCATATCGGCTGAGCGCTGATACATTTGACACGAAAGCTCTCCATTTGTAACATAAAA 712 Query 6736 TTG-GCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACG 6794 || ||| | ||||||| || || || ||||||| || || || ||||| | Sbjct 711 CTGCGCA-AACATGTGGCATGGAGGAAGTGCCATCAACTTAAGGTCAGAAGGATTCCAAG 653 Query 6795 CGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCACGTACTGCA 6854 | |||| | |||| || |||||||| || ||| | ||| || || | | | Sbjct 652 CCGACATTATTATCCGTCGATCATCAGGATTGTTCTTGATCTTGTTAATTACATCCGAGA 593 Query 6855 GCTGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGATACTCCGCCCCAAAGT 6914 |||| || ||| || || | ||| || || | | | |||| || ||||||| Sbjct 592 GCTGATCAAATCCTTGGCCAGTATAATCAGCATGCATATCTGTGTACTTAGCACCAAAGT 533 Query 6915 GTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTC 6957 ||||||| || || || || || || || | ||| || || || Sbjct 532 GTCTCCATTGAAATCCATAAACGGGTCCAAGGTCACCTTCTTC 490 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447906933520080