Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04] 63,439 sequences; 2,073,344,508 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq107 163 2e-35 seq7730 118 9e-22 seq62 113 4e-20 seq41 104 2e-17 seq170 95.1 1e-14 >seq107 Length=5366022 Score = 163 bits (180), Expect = 2e-35 Identities = 180/240 (75%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 1291 TTGTAACATGGCAAAAAGTTAAAGCATCAAGCCCAGAAAACATGGCCACTTTTAGTAATG 1350 |||| || ||||| ||| | || || | |||||||||||||||| ||| || || || Sbjct 5323814 TTGTGACGTGGCAGAAAATCAAGGCTACTAGCCCAGAAAACATGGTCACCTTCAGCAAGT 5323755 Query 1351 ACCACGGGGTTGTTGTTCAGCCAGCATACAAAGATAAAATGAACATAACTGAGCTTGGAC 1410 ||| |||||||| || |||||||| || || || || || ||||| |||||||| |||| Sbjct 5323754 CCCATGGGGTTGTGGTCCAGCCAGCCTATAAGGACAAGATCAACATCACTGAGCTGGGAC 5323695 Query 1411 TACAAAACACAACTATAACCTTCTGGAACACAACATTGGATGATGAAGGGTGCTACAAGT 1470 | || ||| |||| || ||||||||||| || || |||| ||||| || || ||| | | Sbjct 5323694 TCCAGAACTCAACCATTACCTTCTGGAATACCACCCTGGAGGATGAGGGATGTTACCAAT 5323635 Query 1471 GTTTATTTAACACTTTTGGATCTGGGAAGATGTCAGGAATAGGGTGTCTAACCCTTTTTG 1530 | | ||||| || ||||| |||||||| | | |||| || || || || || |||| Sbjct 5323634 GCCTCTTTAATACATTTGGTTCTGGGAATGTCTTCGGAAAAGCCTGCCTCACTCTATTTG 5323575 >seq7730 Length=1237 Score = 118 bits (130), Expect = 9e-22 Identities = 318/475 (67%), Gaps = 16/475 (3%) Strand=Plus/Minus Query 118585 TTAAAAGGAACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCC 118644 ||||| || ||||| |||||||| || ||||| | ||| |||| ||| || || ||||| Sbjct 788 TTAAACGGTACACCAAGACCCATATCGGCTGAGCGCTGATACATTTGACACGAAAGCTCT 729 Query 118645 CCGTTTGCAACATAAAACTGACTTATGATGTGACATGGAGGCAGAACCATGGAACTCAGT 118704 || |||| |||||||||||| | ||||| |||||||| || |||| | | || Sbjct 728 CCATTTGTAACATAAAACTGCGCAAACATGTGGCATGGAGGAAGTGCCATCAACTTAAGG 669 Query 118705 TGGGCAGGATTCCAGGCTGTTAAAACATGCCTTCTGCTAT-ATGGTTCTACCTGTATACC 118763 | | ||||||||| || | | | || || || | | || | | || || Sbjct 668 TCAGAAGGATTCCAAGCCGACATTATTATCCGTCGATCATCAGGATTGTTCTTG-ATCTT 610 Query 118764 CTCAATTAAATTCTGAATCTGATCCACACCCTTTCCAGTATACTGAGACTCGCAT-CCTT 118822 | ||||| || | | |||||| | || | |||||||| | || | |||| || Sbjct 609 GTTAATTACATCCGAGAGCTGATCAAATCCTTGGCCAGTATAATCAG-CATGCATATCTG 551 Query 118823 TATATTCTGCCCCAAAAAATCTCCATTGAAAACCATAAACAGGCCCCAGATCTCC--CTG 118880 | || | || ||||| |||||||||||| |||||||| || || || || || || Sbjct 550 TGTACTTAGCACCAAAGTGTCTCCATTGAAATCCATAAACGGGTCCAAGGTCACCTTCTT 491 Query 118881 GGACCTAA---AATCTAAACCTACTTTTCTCTGAAATTCTTTTGACCCATTAGCATTCCA 118937 || | | || || ||| | || ||| ||||| |||| ||| ||| Sbjct 490 CTCTCTCAGTCAGTCCAA---TACCATCAAGATAAGTTC--TTGACGCATTCCCATCCCA 436 Query 118938 AATA-GCAACTCCtttttttGCCAGATCATTAGAGTTTGTAGAACCACTTAAAAACCAAA 118996 ||| | | |||||| ||| || || | || || ||||| |||| ||||||| Sbjct 435 TATATGGATACCCTTTTCTTG-AAGTAACTTTGCATTGGTTGAACCGCTTATGAACCAAA 377 Query 118997 GAAGCTCCTCAACAACGCCTCTCCAAAAAACTGTTTTTGTTGTAAACAGTGGAAA 119051 |||| ||||||||||| |||||||| || ||| | ||||| || | |||||||| Sbjct 376 GAAGTTCCTCAACAACACCTCTCCAGAATACTCTCTTTGTCGTCAGAAGTGGAAA 322 >seq62 Length=7058428 Score = 113 bits (124), Expect = 4e-20 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 3245 GTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAG 3304 || || || ||||| ||| | || ||||| ||||||||| | ||||| || ||||||||| Sbjct 3133922 GTGGTGGAGGAGCTTTTCAGGGACGGGGTGAACTGGGGGAGGATTGTGGCCTTCTTTGAG 3133863 Query 3305 TTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAAC 3364 || ||||| || ||||||||||| |||||||| | | || | |||| || |||||| Sbjct 3133862 TTCGGTGGGGTCATGTGTGTGGAGAGCGTCAACCGGGAGATGTCGCCCCTGGTGGACAAC 3133803 Query 3365 ATTGCCGCGTGGATGACAGA 3384 || ||| ||||||||| || Sbjct 3133802 ATCGCCCTGTGGATGACTGA 3133783 >seq41 Length=9019916 Score = 104 bits (114), Expect = 2e-17 Identities = 331/503 (66%), Gaps = 24/503 (5%) Strand=Plus/Minus Query 2188 GGAAAACTGCCATGGCCTCCTCTTAAAAATGAATTTAAACATTTTCAAAAAATGACAT-- 2245 ||| | ||||| ||||| ||||| || ||||| ||| |||| |||| |||||| | Sbjct 2256003 GGAGACCTGCCCTGGCCCCCTCTCGGGAACGAATTCAAATATTTCCAAAGAATGACCTTA 2255944 Query 2246 -CTTCTTCCACTGACTTAAAACAGAATGTTGTAATTATGGGAAGAAAGACATGGTTTTCA 2304 | ||| | || || ||||||| |||| |||| || |||||||| ||||| || Sbjct 2255943 ACCCCTTGAGCAGAAGAAACACAGAAT-TTGTGATTACGGCTAGAAAGACCTGGTTCTCC 2255885 Query 2305 CTTCCCATTAA-AAGCAGGCCTTTGAACAACAGAATAAATCTGGTTCTCAGTAGACACCT 2363 |||| || || || ||||| || |||| || ||| | ||||||| |||| | || Sbjct 2255884 ATTCCTGAGAAGAATCAA-CCTTTAAAGGACAGGATTAATTTAGTTCTCAATAGAGAACT 2255826 Query 2364 TAAAGAGCCACCACGTGGGGCTCACTTTGTTGCAAAAAGTATAGATCACGCTCTGGAAAT 2423 || || || || | | ||| ||| |||| ||||| | ||| | || || |||| Sbjct 2255825 CAAGGAACCTCCGCAAACAGTTCATTTTCTTGCCCAAAGTCTGGATGATGC-CTTGAAAC 2255767 Query 2424 TATAATAGG--ACCAGAATTAAAAGACAGGGTGGATAAGATTTGGATAATTGGTGGAAGA 2481 | || | | ||||||||||| | || ||||| | | |||||||| | | || || Sbjct 2255766 T-TACTGAGCAACCAGAATTAACAAACCAAGTGGACATGGTTTGGATAGTGGAAGGCAGT 2255708 Query 2482 TCTGTCTATGAGGAGAGCAT-TACAAGATCTTGCAAACAGATGCTGTTTTTAACAAGGAT 2540 |||| || |||| ||| ||||| | || | | | || || | |||||| Sbjct 2255707 TCTGATGATAAGGAAGCCATGAACAAG-CCAGGCCATCTTAGACTATTCGTGACAAGG-- 2255651 Query 2541 TCTGCAAAAATTTGAATGTGATACA--TACTTCCCAGAAATTAATCTTACCAAATACAAA 2598 ||||| | |||| ||| | || |||| || | | | ||||| ||| Sbjct 2255650 --------AATTTAACAGTGACACATTTTTTTTCCAGGAACTGCTTTGGAGAAATATAAA 2255599 Query 2599 CAACTTACTGAATTTCCAGGTGTTCCCTCTGCCGTGCAAGAAGAAAATGGAATTAGATAC 2658 | || | |||| |||||| ||| |||| || || || || || || |||| |||| Sbjct 2255598 CTTCTCCCAGAATACCCAGGTATTCTTTCTGATGTCCAGGAGGAGAAAGGCATTAAATAC 2255539 Query 2659 AAATTTGAGATATATGaaaaaaa 2681 |||||||| ||||| ||| || Sbjct 2255538 AAATTTGAAGTATATACAAACAA 2255516 >seq170 Length=9568404 Score = 95.1 bits (104), Expect = 1e-14 Identities = 118/162 (73%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 118534 AGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGA 118593 || || || | ||| || |||||||| || | || ||||||||| | || || || Sbjct 9399134 AGGCCAGTGATGTGCGCGATCATGTAGGTGAGCAGGGAGTAGCTGGCGATGTTGAAGGGC 9399075 Query 118594 ACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCA 118653 || ||||| |||||||||||||| ||||| |||| ||||| || ||||| ||||| | Sbjct 9399074 ACCCCCAGGCCCATGTCTGCTGACCTCTGATACAGCTGGCAGGACAGCTCACCGTTCACC 9399015 Query 118654 ACATAAAACTGACTTATGATGTGACATGGAGGCAGAACCATG 118695 || || ||||| | | | || || ||||| ||| ||||| Sbjct 9399014 ACGTAGAACTGGCAAAGGGCATGGCACGGAGGTAGAGCCATG 9398973 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414156341951596