Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04] 63,439 sequences; 2,073,344,508 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq273 98.7 7e-16 seq21504 84.2 2e-11 >seq273 Length=4066651 Score = 98.7 bits (108), Expect = 7e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 |||||||| || | || || ||||| |||| || |||||||| ||||| ||||| Sbjct 887322 GACAAAGAGGGCATCCCCCCTGACCAGCAGAGGTTGATCTTTGCCGGCAAACAGTTGGAA 887263 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 |||| ||||| | ||||||| ||||||||||| |||||| |||| |||| |||| || Sbjct 887262 GACGGACGCACCCTGTCCGACTACAACATCCAGAAAGAGTCCACTCTGCACCTGGTCCTG 887203 Query 28003 CGTTTGCGTGGCGG 28016 || ||| | || || Sbjct 887202 CGCTTGAGGGGAGG 887189 >seq21504 Length=484 Score = 84.2 bits (92), Expect = 2e-11 Identities = 104/138 (75%), Gaps = 6/138 (4%) Strand=Plus/Plus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||| ||||| | || ||| |||||| ||||||| || |||||||| ||| | || Sbjct 108 GACAAGGAAGGCATCCCACCGGACCAGCAAAGGTTAATCTTCGCCGGAAAGCAACTCGAA 167 Query 27943 GACGAACGCAG-CTTGTCCGATTACAACATCCAAAAAGAG--AGCACTTTGCATTTGGTT 27999 || | ||| | |||| | || ||||||||||| |||||| | ||||| || ||||| Sbjct 168 GATGGACGAACTCTTG-CTGACTACAACATCCAGAAAGAGTCAACACTT--CACTTGGTC 224 Query 28000 TTGCGTTTGCGTGGCGGC 28017 |||||| | ||||| ||| Sbjct 225 TTGCGTCTCCGTGGTGGC 242 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355587260425953