Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04]
63,439 sequences; 2,073,344,508 total letters
Query= NC_029304.1
Length=111246
Score E
Sequences producing significant alignments: (Bits) Value
seq273 98.7 7e-16
seq21504 84.2 2e-11
>seq273
Length=4066651
Score = 98.7 bits (108), Expect = 7e-16
Identities = 102/134 (76%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942
|||||||| || | || || ||||| |||| || |||||||| ||||| |||||
Sbjct 887322 GACAAAGAGGGCATCCCCCCTGACCAGCAGAGGTTGATCTTTGCCGGCAAACAGTTGGAA 887263
Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002
|||| ||||| | ||||||| ||||||||||| |||||| |||| |||| |||| ||
Sbjct 887262 GACGGACGCACCCTGTCCGACTACAACATCCAGAAAGAGTCCACTCTGCACCTGGTCCTG 887203
Query 28003 CGTTTGCGTGGCGG 28016
|| ||| | || ||
Sbjct 887202 CGCTTGAGGGGAGG 887189
>seq21504
Length=484
Score = 84.2 bits (92), Expect = 2e-11
Identities = 104/138 (75%), Gaps = 6/138 (4%)
Strand=Plus/Plus
Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942
||||| ||||| | || ||| |||||| ||||||| || |||||||| ||| | ||
Sbjct 108 GACAAGGAAGGCATCCCACCGGACCAGCAAAGGTTAATCTTCGCCGGAAAGCAACTCGAA 167
Query 27943 GACGAACGCAG-CTTGTCCGATTACAACATCCAAAAAGAG--AGCACTTTGCATTTGGTT 27999
|| | ||| | |||| | || ||||||||||| |||||| | ||||| || |||||
Sbjct 168 GATGGACGAACTCTTG-CTGACTACAACATCCAGAAAGAGTCAACACTT--CACTTGGTC 224
Query 28000 TTGCGTTTGCGTGGCGGC 28017
|||||| | ||||| |||
Sbjct 225 TTGCGTCTCCGTGGTGGC 242
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 355587260425953
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |